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[Fabounet <fabounet03@xxxxxxxxx>]

More details:
the code uses the function g_app_info_launch_default_for_uri()
with an URi of the type file://...
the problem has already been reported with Nautilus 1 year ago, a fix has been made in gio, but the problem continues to occur (although slightly less often).
if Nautilus has been launched 1 time before (even if the window has been closed then), the URI is always launched correctly.

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https://bugs.launchpad.net/bugs/701499

Title:
  Nautilus doesn't start at first clics on Cairo-Dock applets

Status in “gvfs” package in Ubuntu:
  Confirmed

Bug description:
  Binary package hint: gvfs

  When my Ubuntu boots, Cairo-Dock gets started, including some browsing
  applets : Shortcuts and Quick Browser.

  Unfortunately, when I click them, nothing happens. I can click a few
  times, then suddenly many Nautilus windows will open, one for each
  click I made.

  But when Nautilus have already been launched by any other mean (Gnome
  Menu, whatever), those applets worked correctly and my Nautilus gets
  open and ready to use in a second!

  ProblemType: Bug
  DistroRelease: Ubuntu 10.10
  Package: gvfs 1.6.4-0ubuntu1.1
  Uname: Linux 2.6.37-020637rc2-generic i686
  NonfreeKernelModules: wl
  Architecture: i386
  Date: Tue Jan 11 15:48:50 2011
  InstallationMedia: Ubuntu 10.10 "Maverick Meerkat" - Release i386 (20101007)
  ProcEnviron:
   LANGUAGE=fr_BE:fr:en
   LANG=fr_BE.utf8
   SHELL=/bin/bash
  SourcePackage: gvfs