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[Jens Wienstroer <jens.wienstroer@xxxxxxxxx>]

I also faced this issue frequently in Ubuntu 11.10. Interestingly, the bug does not 
show up every time  the update manager window pops up in launcher. Two out of
three times the update manager window shows up, when I click the icon. 

I hoped this would be solved in Ubuntu 12.04 but the problem is still there.
(I'm having it right now.)

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https://bugs.launchpad.net/bugs/989588

Title:
  update-manager popup is shown on launcher and alt-tab list but window
  doesn't show up

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