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[Doug McMahon <1200829@xxxxxxxxxxxxxxxxxx>]

I'm going to take the above comment back to some extent though this bug
& the above are interconnected.

The current gtk3 includes an upstream commit to fix this bug -  (xi2: Reset scroll valuators on synthesized crossing events
https://bugzilla.gnome.org/show_bug.cgi?id=690275

That commit combined with the prev & next bindings being set in Desktop-
based Viewport Switching  as previously described causes this bug & also
causes jerky scrolling  as described in  bug 1184159

I can confirm that here by installing the gtk3 packages from here which reverts the xi2: Reset scroll valuators on synthesized crossing events commit 
https://launchpad.net/~mc3man/+archive/test-scroll/+packages

** Bug watch added: GNOME Bug Tracker #690275
   https://bugzilla.gnome.org/show_bug.cgi?id=690275

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https://bugs.launchpad.net/bugs/1200829

Title:
  Regression: Enabling  "Desktop-based Viewport Switching" breaks
  scrollwheel scrolling in some windows with a usb mouse on a laptop

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