dhis2-devs team mailing list archive

[Orvalho Augusto <orvaquim@xxxxxxxxx>]

Guys I found why.

It is because generating organitstructure takes a long time. (Mytop
monitored this query: INSERT INTO orgunitstructure ...)

The default transaction waiting time on MySQL is 50seconds.
I increased this innodb_lock_wait_timeout to 600seconds and it runs.

Please someone can help me. I am get a sensation that the DHIS community is
abandoning MySQL support. Is it that true?

Caveman


On Sun, Jul 11, 2010 at 9:28 PM, Orvalho Augusto <orvaquim@xxxxxxxxx> wrote:

> I did not have success. My logs are:
>
> ===========================================================
> * ERROR 21:24:31,306 Error while executing action
> (ExceptionInterceptor.java [http-8081-6])
> java.lang.RuntimeException: Failed to flush BatchHandler
>     at
> org.amplecode.quick.batchhandler.AbstractBatchHandler.flush(AbstractBatchHandler.java:290)
>     at
> org.hisp.dhis.resourcetable.DefaultResourceTableService.generateOrganisationUnitStructures(DefaultResourceTableService.java:196)
>     at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
>     at
> sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
>     at
> sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
>     at java.lang.reflect.Method.invoke(Method.java:616)
>     at
> org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307)
>     at
> org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:182)
>     at
> org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:149)
>     at
> org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:106)
>     at
> org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:171)
>     at
> org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:204)
>     at $Proxy21.generateOrganisationUnitStructures(Unknown Source)
>     at
> org.hisp.dhis.dataadmin.action.resourcetable.GenerateResourceTableAction.execute(GenerateResourceTableAction.java:114)
>     at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
>     at
> sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
>     at
> sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
>     at java.lang.reflect.Method.invoke(Method.java:616)
>     at
> com.opensymphony.xwork2.DefaultActionInvocation.invokeAction(DefaultActionInvocation.java:440)
>     at
> com.opensymphony.xwork2.DefaultActionInvocation.invokeActionOnly(DefaultActionInvocation.java:279)
>     at
> com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:242)
>     at
> org.hisp.dhis.webportal.interceptor.XWorkPortalUserInterceptor.intercept(XWorkPortalUserInterceptor.java:82)
>     at
> com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:236)
>     at
> org.hisp.dhis.webportal.interceptor.XWorkPortalModuleInterceptor.intercept(XWorkPortalModuleInterceptor.java:85)
>     at
> com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:236)
>     at
> org.hisp.dhis.webportal.interceptor.XWorkPortalMenuInterceptor.intercept(XWorkPortalMenuInterceptor.java:91)
>     at
> com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:236)
>     at
> org.hisp.dhis.webportal.interceptor.XWorkPortalParamsInterceptor.intercept(XWorkPortalParamsInterceptor.java:117)
>     at
> com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:236)
>     at
> org.hisp.dhis.interceptor.StyleInterceptor.intercept(StyleInterceptor.java:89)
>     at
> com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:236)
>     at
> org.hisp.dhis.interceptor.SystemSettingInterceptor.intercept(SystemSettingInterceptor.java:94)
>     at
> com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:236)
>     at
> org.hisp.dhis.interceptor.DataDictionaryModeInterceptor.intercept(DataDictionaryModeInterceptor.java:109)
>     at
> com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:236)
>     at
> org.hisp.dhis.interceptor.DisplayPropertyInterceptor.intercept(DisplayPropertyInterceptor.java:90)
>     at
> com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:236)
>     at
> org.hisp.dhis.interceptor.SortOrderInterceptor.intercept(SortOrderInterceptor.java:124)
>     at
> com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:236)
>     at
> org.hisp.dhis.security.intercept.XWorkSecurityInterceptor.intercept(XWorkSecurityInterceptor.java:98)
>     at
> com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:236)
>     at
> org.hisp.dhis.interceptor.I18nInterceptor.intercept(I18nInterceptor.java:141)
>     at
> com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:236)
>     at
> com.opensymphony.xwork2.interceptor.ChainingInterceptor.intercept(ChainingInterceptor.java:126)
>     at
> com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:236)
>     at
> com.opensymphony.xwork2.interceptor.ParametersInterceptor.doIntercept(ParametersInterceptor.java:195)
>     at
> com.opensymphony.xwork2.interceptor.MethodFilterInterceptor.intercept(MethodFilterInterceptor.java:87)
>     at
> com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:236)
>     at
> com.opensymphony.xwork2.interceptor.StaticParametersInterceptor.intercept(StaticParametersInterceptor.java:148)
>     at
> com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:236)
>     at
> org.hisp.dhis.interceptor.ExceptionInterceptor.intercept(ExceptionInterceptor.java:89)
>     at
> com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:236)
>     at
> org.apache.struts2.impl.StrutsActionProxy.execute(StrutsActionProxy.java:52)
>     at
> org.apache.struts2.dispatcher.Dispatcher.serviceAction(Dispatcher.java:468)
>     at
> org.apache.struts2.dispatcher.FilterDispatcher.doFilter(FilterDispatcher.java:395)
>     at
> org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235)
>     at
> org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
>     at
> org.springframework.security.util.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:378)
>     at
> org.hisp.dhis.security.filter.RequiredLoginFilter.doFilter(RequiredLoginFilter.java:129)
>     at
> org.springframework.security.util.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:390)
>     at
> org.hisp.dhis.security.filter.AutomaticAccessFilter.doFilter(AutomaticAccessFilter.java:112)
>     at
> org.springframework.security.util.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:390)
>     at
> org.springframework.security.ui.logout.LogoutFilter.doFilterHttp(LogoutFilter.java:89)
>     at
> org.springframework.security.ui.SpringSecurityFilter.doFilter(SpringSecurityFilter.java:53)
>     at
> org.springframework.security.util.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:390)
>     at
> org.springframework.security.ui.AbstractProcessingFilter.doFilterHttp(AbstractProcessingFilter.java:278)
>     at
> org.springframework.security.ui.SpringSecurityFilter.doFilter(SpringSecurityFilter.java:53)
>     at
> org.springframework.security.util.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:390)
>     at
> org.springframework.security.context.HttpSessionContextIntegrationFilter.doFilterHttp(HttpSessionContextIntegrationFilter.java:235)
>     at
> org.springframework.security.ui.SpringSecurityFilter.doFilter(SpringSecurityFilter.java:53)
>     at
> org.springframework.security.util.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:390)
>     at
> org.springframework.security.util.FilterChainProxy.doFilter(FilterChainProxy.java:175)
>     at
> org.springframework.web.filter.DelegatingFilterProxy.invokeDelegate(DelegatingFilterProxy.java:236)
>     at
> org.springframework.web.filter.DelegatingFilterProxy.doFilter(DelegatingFilterProxy.java:167)
>     at
> org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235)
>     at
> org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
>     at
> org.springframework.orm.hibernate3.support.OpenSessionInViewFilter.doFilterInternal(OpenSessionInViewFilter.java:198)
>     at
> org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:76)
>     at
> org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235)
>     at
> org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
>     at
> org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:233)
>     at
> org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:191)
>     at
> org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:128)
>     at
> org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:102)
>     at
> org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:109)
>     at
> org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:293)
>     at
> org.apache.coyote.http11.Http11Processor.process(Http11Processor.java:849)
>     at
> org.apache.coyote.http11.Http11Protocol$Http11ConnectionHandler.process(Http11Protocol.java:583)
>     at
> org.apache.tomcat.util.net.JIoEndpoint$Worker.run(JIoEndpoint.java:454)
>     at java.lang.Thread.run(Thread.java:636)
> Caused by: java.sql.SQLException: Lock wait timeout exceeded; try
> restarting transaction
>     at com.mysql.jdbc.SQLError.createSQLException(SQLError.java:1055)
>     at com.mysql.jdbc.SQLError.createSQLException(SQLError.java:956)
>     at com.mysql.jdbc.MysqlIO.checkErrorPacket(MysqlIO.java:3491)
>     at com.mysql.jdbc.MysqlIO.checkErrorPacket(MysqlIO.java:3423)
>     at com.mysql.jdbc.MysqlIO.sendCommand(MysqlIO.java:1936)
>     at com.mysql.jdbc.MysqlIO.sqlQueryDirect(MysqlIO.java:2060)
>     at com.mysql.jdbc.ConnectionImpl.execSQL(ConnectionImpl.java:2536)
>     at com.mysql.jdbc.StatementImpl.executeUpdate(StatementImpl.java:1564)
>     at com.mysql.jdbc.StatementImpl.executeUpdate(StatementImpl.java:1485)
>     at
> org.amplecode.quick.batchhandler.AbstractBatchHandler.flush(AbstractBatchHandler.java:274)
>     ... 89 more
>
> ==================================================================
>
> This seems to come again from database thing.
>
> Caveman
>
>
>
> On Sun, Jul 11, 2010 at 5:03 PM, Jason Pickering <
> jason.p.pickering@xxxxxxxxx> wrote:
>
>> A very common mistake is not having generated the resource tables,
>> namely "orgunitstructure". Consult the documentation for more details
>> on how to generate these tables.
>>
>> Regards,
>> Jason
>>
>>
>> On Sun, Jul 11, 2010 at 4:27 PM, Orvalho Augusto <orvaquim@xxxxxxxxx>
>> wrote:
>> > I have a dataelement collected at a Health Centre level (eg: ats_posfem)
>> in
>> > one province and only in some particular districts. In unpredictible
>> future
>> > at National level we will be collecting on every health centre.
>> >
>> > Now, my ignorance: How can I obtain the provincial total on Report
>> Table? I
>> > have been battled with DHIS so far and nothing.
>> >
>> > Thanks guys
>> > Caveman
>> >
>> >
>> > _______________________________________________
>> > Mailing list: https://launchpad.net/~dhis2-devs<https://launchpad.net/%7Edhis2-devs>
>> > Post to     : dhis2-devs@xxxxxxxxxxxxxxxxxxx
>> > Unsubscribe : https://launchpad.net/~dhis2-devs<https://launchpad.net/%7Edhis2-devs>
>> > More help   : https://help.launchpad.net/ListHelp
>> >
>> >
>>
>>
>>
>> --
>> --
>> Jason P. Pickering
>> email: jason.p.pickering@xxxxxxxxx
>> tel:+260968395190
>>
>
>
>
>