dhis2-devs team mailing list archive

[Gomez Phiri <gomezphiri@xxxxxxxxxxx>]

I see, all the best then.

Date: Tue, 24 Sep 2013 13:56:11 +0200
Subject: Re: [Dhis2-devs] Upgrade from 2.10 to 2.12 failing
From: jason.p.pickering@xxxxxxxxx
To: gomezphiri@xxxxxxxxxxx
CC: dhis2-devs@xxxxxxxxxxxxxxxxxxx

Hi Gomez,Thanks, as I mentioned before.  This is something related to this particular database. This has been an issue in the past with some database, but may not be a general problem. 

I was seeking advice from the developers about what the potential metadata issue could be, as the logs are not very clear exactly what the cause of the error might be. 
Regards,Jason



On Tue, Sep 24, 2013 at 1:51 PM, Gomez Phiri <gomezphiri@xxxxxxxxxxx> wrote:




Hi Jason,
I just upgraded our demo server from 2.10 to 2.12 today. This is what I did to avoid all the troubles.
Steps
service tomcat stop
back up database "pg_dump dhis2 -U dhis | gzip > db.gz" Our database is large so I had to compress it with gzip.restart postgres
su postgres psqlDROP DATABASE db;CREATE DATABASE "db" WITH OWNER "owner" ENCODING 'UTF8';
\qexitRestore database "gunzip -c db.gz | psql db"service tomcat start 
Its working superb 

Gomez.
Date: Tue, 24 Sep 2013 12:26:56 +0200
From: jason.p.pickering@xxxxxxxxx
To: dhis2-devs@xxxxxxxxxxxxxxxxxxx

Subject: [Dhis2-devs] Upgrade from 2.10 to 2.12 failing

Using the latest 2.12 build from Jenkins. 
Looks like something is failing on the startup, but not sure what?

This DB runs fine on 2.10. The first time around, a bunch of timestamps were updated. I killed the server, restarted, but still getting stuck at step 4 /10. 

Any tips?
Regards,Jason

* INFO  2013-09-24 11:21:23,080 Found the following message senders: [org.hisp.dhis.message.EmailMessageSender@17a220d7, org.hisp.dhis.sms.outbound.SmsSender@151a0f60] (DefaultMessageService.java [main])

* INFO  2013-09-24 11:21:39,093 Camel context started (DHIS2LifecycleStrategy.java [main])* INFO  2013-09-24 11:21:39,094 Searching for routes in directory: /home/testinstance/dhis_home/routes (DHIS2LifecycleStrategy.java [main])

* INFO  2013-09-24 11:21:40,242 Executing startup routine [1 of 10, runlevel 1]: TableAlteror (DefaultStartupRoutineExecutor.java [main])* INFO  2013-09-24 11:21:46,749 Tables updated (TableAlteror.java [main])

* INFO  2013-09-24 11:21:46,750 Executing startup routine [2 of 10, runlevel 1]: MapViewUpgrader (DefaultStartupRoutineExecutor.java [main])* INFO  2013-09-24 11:21:47,012 Executing startup routine [3 of 10, runlevel 2]: IdentityPopulator (DefaultStartupRoutineExecutor.java [main])

Sep 24, 2013 11:21:48 AM org.apache.catalina.core.StandardContext startSEVERE: Error listenerStartSep 24, 2013 11:21:48 AM org.apache.catalina.core.StandardContext startSEVERE: Context [/testinstance] startup failed due to previous errors

* INFO  2013-09-24 11:21:48,017 De-registering jdbc driver: org.h2.Driver@65b8b5cd (StartupListener.java [main])* INFO  2013-09-24 11:21:48,018 De-registering jdbc driver: org.hsqldb.jdbc.JDBCDriver@2830803a (StartupListener.java [main])

* INFO  2013-09-24 11:21:48,018 De-registering jdbc driver: com.mysql.jdbc.Driver@1ccdf3c2 (StartupListener.java [main])* INFO  2013-09-24 11:21:48,018 De-registering jdbc driver: org.postgresql.Driver@2f1261b1 (StartupListener.java [main])

* INFO  2013-09-24 11:21:48,186 Camel context stopped (DHIS2LifecycleStrategy.java [main])Sep 24, 2013 11:21:48 AM org.apache.catalina.loader.WebappClassLoader clearReferencesThreadsSEVERE: A web application appears to have started a thread named [Resource Destroyer in BasicResourcePool.close()] but has failed to stop it. This is very likely to create a memory leak.

Sep 24, 2013 11:21:48 AM org.apache.catalina.loader.WebappClassLoader clearThreadLocalMapSEVERE: A web application created a ThreadLocal with key of type [org.springframework.core.NamedThreadLocal] (value [Transactional resources]) and a value of type [null] (value [null]) but failed to remove it when the web application was stopped. To prevent a memory leak, the ThreadLocal has been forcibly removed.

Sep 24, 2013 11:21:48 AM org.apache.catalina.loader.WebappClassLoader clearThreadLocalMapSEVERE: A web application created a ThreadLocal with key of type [org.springframework.core.NamedThreadLocal] (value [Transaction synchronizations]) and a value of type [null] (value [null]) but failed to remove it when the web application was stopped. To prevent a memory leak, the ThreadLocal has been forcibly removed.

Sep 24, 2013 11:21:48 AM org.apache.catalina.loader.WebappClassLoader clearThreadLocalMapSEVERE: A web application created a ThreadLocal with key of type [org.springframework.core.NamedThreadLocal] (value [Prototype beans currently in creation]) and a value of type [null] (value [null]) but failed to remove it when the web application was stopped. To prevent a memory leak, the ThreadLocal has been forcibly removed.

Sep 24, 2013 11:21:48 AM org.apache.catalina.loader.WebappClassLoader clearThreadLocalMapSEVERE: A web application created a ThreadLocal with key of type [java.lang.ThreadLocal] (value [java.lang.ThreadLocal@9db900f]) and a value of type [org.springframework.security.core.context.SecurityContextImpl] (value [org.springframework.security.core.context.SecurityContextImpl@ffffffff: Null authentication]) but failed to remove it when the web application was stopped. To prevent a memory leak, the ThreadLocal has been forcibly removed.

Sep 24, 2013 11:21:48 AM org.apache.catalina.loader.WebappClassLoader clearThreadLocalMapSEVERE: A web application created a ThreadLocal with key of type [org.springframework.core.NamedThreadLocal] (value [Current transaction name]) and a value of type [null] (value [null]) but failed to remove it when the web application was stopped. To prevent a memory leak, the ThreadLocal has been forcibly removed.

Sep 24, 2013 11:21:48 AM org.apache.catalina.loader.WebappClassLoader clearThreadLocalMapSEVERE: A web application created a ThreadLocal with key of type [org.springframework.core.NamedThreadLocal] (value [Current aspect-driven transaction]) and a value of type [null] (value [null]) but failed to remove it when the web application was stopped. To prevent a memory leak, the ThreadLocal has been forcibly removed.

Sep 24, 2013 11:21:48 AM org.apache.catalina.loader.WebappClassLoader clearThreadLocalMapSEVERE: A web application created a ThreadLocal with key of type [org.springframework.core.NamedThreadLocal] (value [Prototype beans currently in creation]) and a value of type [null] (value [null]) but failed to remove it when the web application was stopped. To prevent a memory leak, the ThreadLocal has been forcibly removed.

Sep 24, 2013 11:21:48 AM org.apache.catalina.loader.WebappClassLoader clearThreadLocalMapSEVERE: A web application created a ThreadLocal with key of type [org.springframework.core.NamedThreadLocal] (value [Locale context]) and a value of type [null] (value [null]) but failed to remove it when the web application was stopped. To prevent a memory leak, the ThreadLocal has been forcibly removed.

Sep 24, 2013 11:21:48 AM org.apache.catalina.loader.WebappClassLoader clearThreadLocalMapSEVERE: A web application created a ThreadLocal with key of type [org.springframework.core.NamedThreadLocal] (value [Current transaction read-only status]) and a value of type [null] (value [null]) but failed to remove it when the web application was stopped. To prevent a memory leak, the ThreadLocal has been forcibly removed.

Sep 24, 2013 11:21:48 AM org.apache.catalina.loader.WebappClassLoader clearThreadLocalMapSEVERE: A web application created a ThreadLocal with key of type [org.springframework.core.NamedThreadLocal] (value [Current transaction isolation level]) and a value of type [null] (value [null]) but failed to remove it when the web application was stopped. To prevent a memory leak, the ThreadLocal has been forcibly removed.

Sep 24, 2013 11:21:48 AM org.apache.catalina.loader.WebappClassLoader clearThreadLocalMapSEVERE: A web application created a ThreadLocal with key of type [org.springframework.core.NamedThreadLocal] (value [Actual transaction active]) and a value of type [null] (value [null]) but failed to remove it when the web application was stopped. To prevent a memory leak, the ThreadLocal has been forcibly removed.

Sep 24, 2013 11:21:48 AM org.apache.catalina.loader.WebappClassLoader clearThreadLocalMapSEVERE: A web application created a ThreadLocal with key of type [null] (value [com.sun.xml.bind.v2.ClassFactory$1@642bf5bf]) and a value of type [java.util.WeakHashMap] (value [{class org.apache.camel.spring.CamelProducerTemplateFactoryBean=java.lang.ref.WeakReference@32b7e05f, class org.apache.camel.model.PackageScanDefinition=java.lang.ref.WeakReference@45eb96fc, class javax.xml.bind.annotation.adapters.CollapsedStringAdapter=java.lang.ref.WeakReference@6e059e40, class java.util.ArrayList=java.lang.ref.WeakReference@32d8b42e, class org.apache.camel.spring.CamelContextFactoryBean=java.lang.ref.WeakReference@311d5216}]) but failed to remove it when the web application was stopped. To prevent a memory leak, the ThreadLocal has been forcibly removed.

Sep 24, 2013 11:21:48 AM org.apache.catalina.loader.WebappClassLoader clearThreadLocalMapSEVERE: A web application created a ThreadLocal with key of type [org.springframework.core.NamedInheritableThreadLocal] (value [Locale context]) and a value of type [null] (value [null]) but failed to remove it when the web application was stopped. To prevent a memory leak, the ThreadLocal has been forcibly removed.

Sep 24, 2013 11:21:48 AM org.apache.catalina.loader.WebappClassLoader clearThreadLocalMapSEVERE: A web application created a ThreadLocal with key of type [org.springframework.core.NamedInheritableThreadLocal] (value [Locale context]) and a value of type [null] (value [null]) but failed to remove it when the web application was stopped. To prevent a memory leak, the ThreadLocal has been forcibly removed.

Sep 24, 2013 11:21:49 AM org.apache.coyote.http11.Http11AprProtocol startINFO: Starting Coyote HTTP/1.1 on http-8082Sep 24, 2013 11:21:49 AM org.apache.catalina.startup.Catalina start

INFO: Server startup in 77181 ms


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