dhis2-devs team mailing list archive

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Re: Upgrade from 2.10 to 2.12 failing

To: Jason Pickering <jason.p.pickering@xxxxxxxxx>
From: Knut Staring <knutst@xxxxxxxxx>
Date: Tue, 24 Sep 2013 15:01:29 +0200
Cc: DHIS 2 developers <dhis2-devs@xxxxxxxxxxxxxxxxxxx>
In-reply-to: <CADsNmhuJh8VeB-oBeaDZExt=f1V3T74GSXGFPsK64df_YJMhLg@mail.gmail.com>
Hi Jason, are you sure you don't need to do 2.11 first?
Den 24. sep. 2013 19:01 skrev "Jason Pickering" <jason.p.pickering@xxxxxxxxx>
følgende:

> Hi Gerald,
>
>  I have done all of this already. Sorry, my procedure was not really
> detailed enough (kill Tomcat, remove WAR, remove directory in webapps,
> download WAR, restart Tomcat)
>
> It is likely a structural problem or metadata problem with my particular
> database. On other databases, it works fine. There is just something
> peculiar about this database, which the startup routines are not handling
> properly.
>
> Regards,
> Jason
>
>
>
> On Tue, Sep 24, 2013 at 12:50 PM, Gerald Thomas <gerald.81@xxxxxxxxxxx>wrote:
>
>> Jason,
>> I had done those procedures before and I had not experience such issues.
>> What I think should be done is to stop the tomcat, copy route file
>> somewhere else and delete it. Then put the new war file and restart tomcat.
>> Sent from my BlackBerry® smartphone from Airtel Sierra Leone
>>
>> -----Original Message-----
>> From: Jason Pickering <jason.p.pickering@xxxxxxxxx>
>> Date: Tue, 24 Sep 2013 10:45:10
>> To: <gerald.81@xxxxxxxxxxx>
>> Cc: <dhis2-devs@xxxxxxxxxxxxxxxxxxx>
>> Subject: Re: [Dhis2-devs] Upgrade from 2.10 to 2.12 failing
>>
>>
>>
>> Hi Gerald,
>>
>> There is no procedure for this really other than replacing the WAR file.
>> When you move from 2.10 to 2.12, you simply replace the old WAR file with
>> the new one,  and the application is supposed to ugprade itself
>> automatically. However in this case, it does not , which indicates a
>> problem in the startup routines and/or database structure.
>>
>>
>> Regards,
>> Jason
>>
>>
>>
>>
>>
>>
>>
>>
>>
>> On Tue, Sep 24, 2013 at 12:35 PM, Gerald Thomas <gerald.81@xxxxxxxxxxx<mailto:
>> gerald.81@xxxxxxxxxxx> > wrote:
>>  You said, you are stuck on step 4/10 which means you have means you have
>> an upgrade procedure installation file. That is the file I want you to
>> share with me.
>>
>> Sent from my BlackBerry® smartphone from Airtel Sierra Leone
>>
>>  -----Original Message-----
>>  From: Jason Pickering <jason.p.pickering@xxxxxxxxx <mailto:
>> jason.p.pickering@xxxxxxxxx> >
>>
>> Date: Tue, 24 Sep 2013 10:32:40
>>  To: <gerald.81@xxxxxxxxxxx <mailto:gerald.81@xxxxxxxxxxx> >
>>  Subject: Re: [Dhis2-devs] Upgrade from 2.10 to 2.12 failing
>>
>>
>>  Hi Gerald,
>>  What is a steps file?
>>
>>
>>  Regards,
>>  Jason
>>
>>
>>
>>
>>
>>
>> On Tue, Sep 24, 2013 at 12:31 PM, Gerald Thomas <gerald.81@xxxxxxxxxxx<mailto:
>> gerald.81@xxxxxxxxxxx>  <mailto:gerald.81@xxxxxxxxxxx <mailto:
>> gerald.81@xxxxxxxxxxx> > > wrote:
>>   Please can you share the steps file you are using with me. Thanks in
>> advance.
>>   Sent from my BlackBerry® smartphone from Airtel Sierra Leone
>>
>>
>>
>>   -----Original Message-----
>>
>>  From: Jason Pickering <jason.p.pickering@xxxxxxxxx <mailto:
>> jason.p.pickering@xxxxxxxxx>  <mailto:jason.p.pickering@xxxxxxxxx<mailto:
>> jason.p.pickering@xxxxxxxxx> > >
>>   Date: Tue, 24 Sep 2013 10:26:56
>>
>>
>>  To: <dhis2-devs@xxxxxxxxxxxxxxxxxxx <mailto:
>> dhis2-devs@xxxxxxxxxxxxxxxxxxx>  <mailto:dhis2-devs@xxxxxxxxxxxxxxxxxxx<mailto:
>> dhis2-devs@xxxxxxxxxxxxxxxxxxx> > >
>>   Subject: [Dhis2-devs] Upgrade from 2.10 to 2.12 failing
>>
>>
>>
>>   Using the latest 2.12 build from Jenkins.
>>
>>
>>   Looks like something is failing on the startup, but not sure what?
>>
>>
>>   This DB runs fine on 2.10. The first time around, a bunch of timestamps
>> were updated. I killed the server, restarted, but still getting stuck at
>> step 4 /10.
>>
>>
>>   Any tips?
>>
>>   Regards,
>>   Jason
>>
>>
>>
>>
>>   * INFO  2013-09-24 11:21:23,080 Found the following message senders:
>> [org.hisp.dhis.message.EmailMessageSender@17a220d7,
>> org.hisp.dhis.sms.outbound.SmsSender@151a0f60]
>> (DefaultMessageService.java [main])
>>   * INFO  2013-09-24 11:21:39,093 Camel context started
>> (DHIS2LifecycleStrategy.java [main])
>>   * INFO  2013-09-24 11:21:39,094 Searching for routes in directory:
>> /home/testinstance/dhis_home/routes (DHIS2LifecycleStrategy.java [main])
>>   * INFO  2013-09-24 11:21:40,242 Executing startup routine [1 of 10,
>> runlevel 1]: TableAlteror (DefaultStartupRoutineExecutor.java [main])
>>   * INFO  2013-09-24 11:21:46,749 Tables updated (TableAlteror.java
>> [main])
>>   * INFO  2013-09-24 11:21:46,750 Executing startup routine [2 of 10,
>> runlevel 1]: MapViewUpgrader (DefaultStartupRoutineExecutor.java [main])
>>   * INFO  2013-09-24 11:21:47,012 Executing startup routine [3 of 10,
>> runlevel 2]: IdentityPopulator (DefaultStartupRoutineExecutor.java [main])
>>   Sep 24, 2013 11:21:48 AM org.apache.catalina.core.StandardContext start
>>   SEVERE: Error listenerStart
>>   Sep 24, 2013 11:21:48 AM org.apache.catalina.core.StandardContext start
>>   SEVERE: Context [/testinstance] startup failed due to previous errors
>>   * INFO  2013-09-24 11:21:48,017 De-registering jdbc driver:
>> org.h2.Driver@65b8b5cd (StartupListener.java [main])
>>   * INFO  2013-09-24 11:21:48,018 De-registering jdbc driver:
>> org.hsqldb.jdbc.JDBCDriver@2830803a (StartupListener.java [main])
>>   * INFO  2013-09-24 11:21:48,018 De-registering jdbc driver:
>> com.mysql.jdbc.Driver@1ccdf3c2 (StartupListener.java [main])
>>   * INFO  2013-09-24 11:21:48,018 De-registering jdbc driver:
>> org.postgresql.Driver@2f1261b1 (StartupListener.java [main])
>>   * INFO  2013-09-24 11:21:48,186 Camel context stopped
>> (DHIS2LifecycleStrategy.java [main])
>>   Sep 24, 2013 11:21:48 AM org.apache.catalina.loader.WebappClassLoader
>> clearReferencesThreads
>>   SEVERE: A web application appears to have started a thread named
>> [Resource Destroyer in BasicResourcePool.close()] but has failed to stop
>> it. This is very likely to create a memory leak.
>>   Sep 24, 2013 11:21:48 AM org.apache.catalina.loader.WebappClassLoader
>> clearThreadLocalMap
>>   SEVERE: A web application created a ThreadLocal with key of type
>> [org.springframework.core.NamedThreadLocal] (value [Transactional
>> resources]) and a value of type [null] (value [null]) but failed to remove
>> it when the web application was stopped. To prevent a memory leak, the
>> ThreadLocal has been forcibly removed.
>>   Sep 24, 2013 11:21:48 AM org.apache.catalina.loader.WebappClassLoader
>> clearThreadLocalMap
>>   SEVERE: A web application created a ThreadLocal with key of type
>> [org.springframework.core.NamedThreadLocal] (value [Transaction
>> synchronizations]) and a value of type [null] (value [null]) but failed to
>> remove it when the web application was stopped. To prevent a memory leak,
>> the ThreadLocal has been forcibly removed.
>>   Sep 24, 2013 11:21:48 AM org.apache.catalina.loader.WebappClassLoader
>> clearThreadLocalMap
>>   SEVERE: A web application created a ThreadLocal with key of type
>> [org.springframework.core.NamedThreadLocal] (value [Prototype beans
>> currently in creation]) and a value of type [null] (value [null]) but
>> failed to remove it when the web application was stopped. To prevent a
>> memory leak, the ThreadLocal has been forcibly removed.
>>   Sep 24, 2013 11:21:48 AM org.apache.catalina.loader.WebappClassLoader
>> clearThreadLocalMap
>>   SEVERE: A web application created a ThreadLocal with key of type
>> [java.lang.ThreadLocal] (value [java.lang.ThreadLocal@9db900f]) and a
>> value of type
>> [org.springframework.security.core.context.SecurityContextImpl] (value
>> [org.springframework.security.core.context.SecurityContextImpl@ffffffff:
>> Null authentication]) but failed to remove it when the web application was
>> stopped. To prevent a memory leak, the ThreadLocal has been forcibly
>> removed.
>>   Sep 24, 2013 11:21:48 AM org.apache.catalina.loader.WebappClassLoader
>> clearThreadLocalMap
>>   SEVERE: A web application created a ThreadLocal with key of type
>> [org.springframework.core.NamedThreadLocal] (value [Current transaction
>> name]) and a value of type [null] (value [null]) but failed to remove it
>> when the web application was stopped. To prevent a memory leak, the
>> ThreadLocal has been forcibly removed.
>>   Sep 24, 2013 11:21:48 AM org.apache.catalina.loader.WebappClassLoader
>> clearThreadLocalMap
>>   SEVERE: A web application created a ThreadLocal with key of type
>> [org.springframework.core.NamedThreadLocal] (value [Current aspect-driven
>> transaction]) and a value of type [null] (value [null]) but failed to
>> remove it when the web application was stopped. To prevent a memory leak,
>> the ThreadLocal has been forcibly removed.
>>   Sep 24, 2013 11:21:48 AM org.apache.catalina.loader.WebappClassLoader
>> clearThreadLocalMap
>>   SEVERE: A web application created a ThreadLocal with key of type
>> [org.springframework.core.NamedThreadLocal] (value [Prototype beans
>> currently in creation]) and a value of type [null] (value [null]) but
>> failed to remove it when the web application was stopped. To prevent a
>> memory leak, the ThreadLocal has been forcibly removed.
>>   Sep 24, 2013 11:21:48 AM org.apache.catalina.loader.WebappClassLoader
>> clearThreadLocalMap
>>   SEVERE: A web application created a ThreadLocal with key of type
>> [org.springframework.core.NamedThreadLocal] (value [Locale context]) and a
>> value of type [null] (value [null]) but failed to remove it when the web
>> application was stopped. To prevent a memory leak, the ThreadLocal has been
>> forcibly removed.
>>   Sep 24, 2013 11:21:48 AM org.apache.catalina.loader.WebappClassLoader
>> clearThreadLocalMap
>>   SEVERE: A web application created a ThreadLocal with key of type
>> [org.springframework.core.NamedThreadLocal] (value [Current transaction
>> read-only status]) and a value of type [null] (value [null]) but failed to
>> remove it when the web application was stopped. To prevent a memory leak,
>> the ThreadLocal has been forcibly removed.
>>   Sep 24, 2013 11:21:48 AM org.apache.catalina.loader.WebappClassLoader
>> clearThreadLocalMap
>>   SEVERE: A web application created a ThreadLocal with key of type
>> [org.springframework.core.NamedThreadLocal] (value [Current transaction
>> isolation level]) and a value of type [null] (value [null]) but failed to
>> remove it when the web application was stopped. To prevent a memory leak,
>> the ThreadLocal has been forcibly removed.
>>   Sep 24, 2013 11:21:48 AM org.apache.catalina.loader.WebappClassLoader
>> clearThreadLocalMap
>>   SEVERE: A web application created a ThreadLocal with key of type
>> [org.springframework.core.NamedThreadLocal] (value [Actual transaction
>> active]) and a value of type [null] (value [null]) but failed to remove it
>> when the web application was stopped. To prevent a memory leak, the
>> ThreadLocal has been forcibly removed.
>>   Sep 24, 2013 11:21:48 AM org.apache.catalina.loader.WebappClassLoader
>> clearThreadLocalMap
>>   SEVERE: A web application created a ThreadLocal with key of type [null]
>> (value [com.sun.xml.bind.v2.ClassFactory$1@642bf5bf]) and a value of
>> type [java.util.WeakHashMap] (value [{class
>> org.apache.camel.spring.CamelProducerTemplateFactoryBean=java.lang.ref.WeakReference@32b7e05f,
>> class
>> org.apache.camel.model.PackageScanDefinition=java.lang.ref.WeakReference@45eb96fc,
>> class
>> javax.xml.bind.annotation.adapters.CollapsedStringAdapter=java.lang.ref.WeakReference@6e059e40,
>> class java.util.ArrayList=java.lang.ref.WeakReference@32d8b42e, class
>> org.apache.camel.spring.CamelContextFactoryBean=java.lang.ref.WeakReference@311d5216}])
>> but failed to remove it when the web application was stopped. To prevent a
>> memory leak, the ThreadLocal has been forcibly removed.
>>   Sep 24, 2013 11:21:48 AM org.apache.catalina.loader.WebappClassLoader
>> clearThreadLocalMap
>>   SEVERE: A web application created a ThreadLocal with key of type
>> [org.springframework.core.NamedInheritableThreadLocal] (value [Locale
>> context]) and a value of type [null] (value [null]) but failed to remove it
>> when the web application was stopped. To prevent a memory leak, the
>> ThreadLocal has been forcibly removed.
>>   Sep 24, 2013 11:21:48 AM org.apache.catalina.loader.WebappClassLoader
>> clearThreadLocalMap
>>   SEVERE: A web application created a ThreadLocal with key of type
>> [org.springframework.core.NamedInheritableThreadLocal] (value [Locale
>> context]) and a value of type [null] (value [null]) but failed to remove it
>> when the web application was stopped. To prevent a memory leak, the
>> ThreadLocal has been forcibly removed.
>>   Sep 24, 2013 11:21:49 AM org.apache.coyote.http11.Http11AprProtocol
>> start
>>   INFO: Starting Coyote HTTP/1.1 on http-8082
>>   Sep 24, 2013 11:21:49 AM org.apache.catalina.startup.Catalina start
>>    INFO: Server startup in 77181 ms
>>
>
>
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Follow ups

Re: Upgrade from 2.10 to 2.12 failing
From: Jason Pickering, 2013-09-24
References

Re: Upgrade from 2.10 to 2.12 failing
From: Gerald Thomas , 2013-09-24
Re: Upgrade from 2.10 to 2.12 failing
From: Jason Pickering, 2013-09-24