dhis2-devs team mailing list archive

[Lars Helge Øverland <larshelge@xxxxxxxxx>]

Hi Robin,

usually the problem is internal duplicates in the import file like Olav
says.

Importing piece by piece is not really proof in this case - if the
duplicates are spread across two pieces then the second piece will simply
update the record imported in the first instead of crashing.

We do imports in SQL bulks to improve performance and hence its a bit
tricky to check for duplicates.

regards,

Lars







On Tue, Sep 16, 2014 at 3:59 PM, Robin Martens <martens@xxxxxxx> wrote:

>  Hi Olav,
>
>
>
> Thanks for the answer but I don't think that's the issue.
>
>
>
> First of all, when checking my CSV with Excel's "Duplicate data"
> functionality there's no duplicates found.
>
> Secondly, when importing the same CSV file but piece by piece (per data
> element-catoptcombo set) I don't have this issue.
>
>
>
> Regards,
>
>
>
> Robin
>
>
>
> *From:* Olav Poppe [mailto:olav.poppe@xxxxxx]
> *Sent:* 16 September 2014 15:26
> *To:* Robin Martens
> *Cc:* dhis2-devs@xxxxxxxxxxxxxxxxxxx
> *Subject:* Re: [Dhis2-devs] DHIS2 - Import data from CSV - bug
>
>
>
> Hi,
>
> I see that your log file actually confirms this:
>
> Caused by: org.postgresql.util.PSQLException: ERROR: duplicate key value
> violates unique constraint "datavalue_pkey"
>
>   Detail: Key (dataelementid, periodid, sourceid, categoryoptioncomboid,
> attributeoptioncomboid)=(2443, 2079, 59, 16, 16) already exists.
>
>
>
> Olav
>
>
>
>
>
>
>
>  16. sep. 2014 kl. 15.23 skrev Olav Poppe <olav.poppe@xxxxxx>:
>
>
>
> Hi,
>
> my experience is that when this happens (dry run works, but actual import
> fails with an error similar to this), it is *usually* caused by duplicate
> values in the source file i.e. multiple values with the same orgunit, data
> element, category and period.
>
>
>
> Olav
>
>
>
>
>
>
>
>  16. sep. 2014 kl. 14.22 skrev Robin Martens <martens@xxxxxxx>:
>
>
>
> Hi devs,
>
>
>
> I'm having what seems like a bug with the import module:
>
>
>
> When importing data from CSV, I get the following error message and the
> batch doesn't run. However, this only happens when importing a data element
> over different categoryoptioncombos and only when it is new data, not
> updates. In other words, I'm getting my import done piece by piece, i.e.
> per data element/categoryoptioncombo combination.
>
>
>
> Also note that the import dry run doesn't detect any issues.
>
>
>
> Any idea how to solve this?
>
>
>
> Kind regards,
>
>
>
> Robin
>
>
>
>
>
>
>
> * INFO  2014-09-16 13:47:11,377 [Level: INFO, category: DATAVALUE_IMPORT,
> time: Tue Sep 16 13:47:11 CAT 2014, message: Process started]
> (InMemoryNotifier.java [taskScheduler-6])
>
> * INFO  2014-09-16 13:47:11,469 [Level: INFO, category: DATAVALUE_IMPORT,
> time: Tue Sep 16 13:47:11 CAT 2014, message: Importing data values]
> (InMemoryNotifier.java [taskScheduler-6])
>
> * INFO  2014-09-16 13:47:11,470 importing data values
> (DefaultDataValueSetService.java [taskScheduler-6])
>
> * ERROR 2014-09-16 13:47:12,396 java.lang.RuntimeException: Failed to
> flush BatchHandler
>
>                 at
> org.amplecode.quick.batchhandler.AbstractBatchHandler.flush(AbstractBatchHandler.java:311)
>
>                 at
> org.hisp.dhis.dxf2.datavalueset.DefaultDataValueSetService.saveDataValueSet(DefaultDataValueSetService.java:613)
>
>                 at
> org.hisp.dhis.dxf2.datavalueset.DefaultDataValueSetService.saveDataValueSetCsv(DefaultDataValueSetService.java:388)
>
>                 at
> org.hisp.dhis.importexport.action.util.ImportDataValueTask.run(ImportDataValueTask.java:78)
>
>                 at
> org.springframework.scheduling.support.DelegatingErrorHandlingRunnable.run(DelegatingErrorHandlingRunnable.java:53)
>
>                 at
> java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:471)
>
>                 at java.util.concurrent.FutureTask.run(FutureTask.java:262)
>
>                 at
> java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.access$201(ScheduledThreadPoolExecutor.java:178)
>
>                 at
> java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:292)
>
>                 at
> java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145)
>
>                 at
> java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
>
>                 at java.lang.Thread.run(Thread.java:744)
>
> Caused by: org.postgresql.util.PSQLException: ERROR: duplicate key value
> violates unique constraint "datavalue_pkey"
>
>   Detail: Key (dataelementid, periodid, sourceid, categoryoptioncomboid,
> attributeoptioncomboid)=(2443, 2079, 59, 16, 16) already exists.
>
>                 at
> org.postgresql.core.v3.QueryExecutorImpl.receiveErrorResponse(QueryExecutorImpl.java:2161)
>
>                 at
> org.postgresql.core.v3.QueryExecutorImpl.processResults(QueryExecutorImpl.java:1890)
>
>                 at
> org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:255)
>
>                 at
> org.postgresql.jdbc2.AbstractJdbc2Statement.execute(AbstractJdbc2Statement.java:560)
>
>                 at
> org.postgresql.jdbc2.AbstractJdbc2Statement.executeWithFlags(AbstractJdbc2Statement.java:403)
>
>                 at
> org.postgresql.jdbc2.AbstractJdbc2Statement.executeUpdate(AbstractJdbc2Statement.java:331)
>
>                 at
> org.amplecode.quick.batchhandler.AbstractBatchHandler.flush(AbstractBatchHandler.java:295)
>
>                 ... 11 more
>
> (DefaultDataValueSetService.java [taskScheduler-6])
>
> * INFO  2014-09-16 13:47:12,396 [Level: ERROR, category: DATAVALUE_IMPORT,
> time: Tue Sep 16 13:47:12 CAT 2014, message: Process failed: Failed to
> flush BatchHandler] (InMemoryNotifier.java [taskScheduler-6])
>
> * ERROR 2014-09-16 13:47:15,261 Left side ($summary.conflicts.size()) of
> '>' operation has null value at
> /dhis-web-importexport/importSummary.vm[line 35, column 33]
> (Log4JLogChute.java [http-bio-8080-exec-2])
>
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