dhis2-devs team mailing list archive
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dhis2-devs team
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Mailing list archive
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Message #33303
Moving to 2.16
Hello Developer's Group
I'm now working on migrating from 2.14 to 2.16 in our test environment and
the startup for tomcat is hanging on step 7. I've included some relevant
snippets of logs below and have attached the full logs:
- stdout.txt = Standard out during importing the DHIS2 2.14 database,
running the upgrade script, and starting tomcat)
- catalina.out = The tomcat log for the latest attempt to start up 2.16
My Notes:
I can boot up 2.14 with the database dump without problem
I can boot up 2.16 with a *blank* database without problem (it creates the
live environment i.e. admin:district)
The problem occurs when I try to boot up 2.16 with the 2.14 database (after
I've run the 2.15 upgrade script found here:
http://www.dhis2.org/download/resources/sql/rename-patient-to-trackedentity.sql
)
It hangs at step 7 of 14 * INFO 2014-10-08 09:45:03,291 Executing startup
routine [7 of 14, runlevel 4]: TrackedEntityTableAlteror
(DefaultStartupRoutineExecutor.java [localhost-startStop-1])
The system, for having such meager hardware, is really snappy with both the
live version of 2.16, and our full production mirror of 2.14.
The com.hazelcast.util.HealthMonitor continues to function even after
the initialization process hangs at step 7 of 14 (as you can see in
catalina.out) Oct 08, 2014 10:36:58 AM com.hazelcast.util.HealthMonitor
Both Java and Postgres are using no cpu cycles after the hang, so it
doesn't *feel* like it is churning away at something:
PID USER PR NI VIRT RES SHR S %CPU %MEM TIME+ COMMAND
1413 dhis 20 0 1895572 570840 16532 S 1.0 44.7 1:48.39 java
906 postgres 20 0 523944 30260 28868 S 0.0 2.4 0:00.47 postgres
908 postgres 20 0 524704 77648 75724 S 0.0 6.1 0:01.04 postgres
909 postgres 20 0 524140 4304 2904 S 0.0 0.3 0:00.16 postgres
910 postgres 20 0 524140 14056 12656 S 0.0 1.1 0:00.50 postgres
911 postgres 20 0 524980 3068 1096 S 0.0 0.2 0:00.11 postgres
912 postgres 20 0 103712 1984 352 S 0.0 0.2 0:00.71 postgres
1432 postgres 20 0 526508 7656 4524 S 0.0 0.6 0:00.00 postgres
1433 postgres 20 0 529308 14604 8948 S 0.0 1.1 0:00.22 postgres
1434 postgres 20 0 536664 46672 32832 S 0.0 3.7 0:08.00 postgres
1904 postgres 20 0 525372 5652 3204 S 0.0 0.4 0:00.00 postgres
1906 postgres 20 0 525256 4860 2548 S 0.0 0.4 0:00.00 postgres
1907 postgres 20 0 525256 4856 2540 S 0.0 0.4 0:00.00 postgres
2114 postgres 20 0 525372 5600 3192 S 0.0 0.4 0:00.00 postgres
(there are a lot of postgres processes it seems like)
I saw some errors on startup but the notes for 2.16 says to expect a few
the first time. I also saw some errors when I ran the import and 2.15
upgrade script.
Database import (grep for errors)
ERROR: must be owner of extension plpgsql
Upgrade script (grep for errors)
ERROR: table "patientaggregatereportmembers" does not exist
ERROR: table "patienttabularreportmembers" does not exist
ERROR: table "patientregistrationform_attributes" does not exist
ERROR: table "patientregistrationform_fixedattributes" does not exist
ERROR: table "patientregistrationform_identifiertypes" does not exist
ERROR: table "patientregistrationform_attributes" does not exist
ERROR: table "patientmobilesetting" does not exist
Any ideas? Is there an upgrade script I've forgotten to run or maybe a
setting I've missed?
Timothy Harding
PeaceCorps Volunteer
Republic of Vanuatu
hardingt@xxxxxxxxx
+678 5955137
dhis@dhis216:~$ psql -d dhis2 < /media/sf_DHIS2Share/vanphis_post_import.sql
SET
SET
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CREATE SCHEMA
CREATE EXTENSION
ERROR: must be owner of extension plpgsql
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WARNING: no privileges could be revoked for "public"
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dhis@dhis216:~$ psql -d dhis2 < /media/sf_DHIS2Share/rename-patient-to-trackedentity.sql
DROP TABLE
DROP TABLE
ERROR: table "patientaggregatereportmembers" does not exist
DROP TABLE
DROP TABLE
ALTER TABLE
DROP TABLE
DROP TABLE
DROP TABLE
ERROR: table "patienttabularreportmembers" does not exist
DROP TABLE
DROP TABLE
DROP TABLE
ALTER TABLE
DROP TABLE
ALTER TABLE
ALTER TABLE
ALTER TABLE
ALTER TABLE
ALTER TABLE
ALTER TABLE
ALTER TABLE
ALTER TABLE
ALTER TABLE
ALTER TABLE
ALTER TABLE
ALTER TABLE
ALTER TABLE
ALTER TABLE
ALTER TABLE
ALTER TABLE
ALTER TABLE
ALTER TABLE
ALTER TABLE
ALTER TABLE
ALTER TABLE
ALTER TABLE
ALTER TABLE
ALTER TABLE
ALTER TABLE
ALTER TABLE
ERROR: table "patientregistrationform_attributes" does not exist
ERROR: table "patientregistrationform_fixedattributes" does not exist
ERROR: table "patientregistrationform_identifiertypes" does not exist
ERROR: table "patientregistrationform_attributes" does not exist
ALTER TABLE
ALTER TABLE
ALTER TABLE
ALTER TABLE
ALTER TABLE
ALTER TABLE
ALTER TABLE
ALTER TABLE
ALTER TABLE
ALTER TABLE
ALTER TABLE
ALTER TABLE
ALTER TABLE
ALTER TABLE
ALTER TABLE
ALTER TABLE
ALTER TABLE
ALTER TABLE
ALTER TABLE
ALTER TABLE
ALTER TABLE
ALTER TABLE
ALTER TABLE
ALTER TABLE
ALTER TABLE
ALTER TABLE
ALTER TABLE
ALTER TABLE
ALTER TABLE
ALTER TABLE
ALTER TABLE
ERROR: table "patientmobilesetting" does not exist
dhis@dhis216:~$ ./tomcat-dhis/bin/startup.sh
Using CATALINA_BASE: /home/dhis/tomcat-dhis
Using CATALINA_HOME: /usr/share/tomcat7
Using CATALINA_TMPDIR: /home/dhis/tomcat-dhis/temp
Using JRE_HOME: /usr/lib/jvm/java-7-openjdk-amd64
Using CLASSPATH: /usr/share/tomcat7/bin/bootstrap.jar:/usr/share/tomcat7/bin/tomcat-juli.jar
Tomcat started.
Tomcat started
Attachment:
catalina.out
Description: Binary data
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