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Message #42857
[Bug 1523882] Re: Getting exception when upgraded application from Version 2.16 to 2.21 with Mysql dataase
** Changed in: dhis2
Status: Fix Committed => Fix Released
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https://bugs.launchpad.net/bugs/1523882
Title:
Getting exception when upgraded application from Version 2.16 to 2.21
with Mysql dataase
Status in DHIS:
Fix Released
Bug description:
Dear All,
We recently upgraded DHIS 2.16 to 2.21 where database is Mysql some of
the errors are listed below.(We are using aggregated data not tracker)
Basically we are getting 3 errors
- Error1: In mysql programrule table is not created automatically
- Error2: While generating resource tables got the error, think the
query should be DROP TABLE IF EXISTS orgunitstructure; Same applies
for all resource tables.
- Error3: Tried to copy resource table structures from old db and
tried generate resource table option, this time got the error:
The details of errors are given below.
While upgrading we ran all the sql update scripts.
Error1:
In mysql programrule table is not created automatically. While starting getting the below error:
* ERROR 2015-12-07 17:36:56,864 Problem updating: programrule, id column: programruleid (IdentityPopulator.java [localho
st-startStop-1])
org.springframework.jdbc.BadSqlGrammarException: StatementCallback; bad SQL grammar [SELECT * from programrule WHERE uid
IS NULL]; nested exception is com.mysql.jdbc.exceptions.jdbc4.MySQLSyntaxErrorException: Table 'dhis.programrule'
doesn't exist
at org.springframework.jdbc.support.SQLErrorCodeSQLExceptionTranslator.doTranslate(SQLErrorCodeSQLExceptionTrans
lator.java:231)
at org.springframework.jdbc.support.AbstractFallbackSQLExceptionTranslator.translate(AbstractFallbackSQLExceptio
nTranslator.java:73)
at org.springframework.jdbc.core.JdbcTemplate.execute(JdbcTemplate.java:416)
at org.springframework.jdbc.core.JdbcTemplate.query(JdbcTemplate.java:471)
at org.springframework.jdbc.core.JdbcTemplate.queryForRowSet(JdbcTemplate.java:526)
at org.hisp.dhis.common.IdentityPopulator.execute(IdentityPopulator.java:86)
at org.hisp.dhis.system.startup.DefaultStartupRoutineExecutor.execute(DefaultStartupRoutineExecutor.java:117)
at org.hisp.dhis.system.startup.DefaultStartupRoutineExecutor.execute(DefaultStartupRoutineExecutor.java:86)
at org.hisp.dhis.system.startup.StartupListener.contextInitialized(StartupListener.java:71)
at org.apache.catalina.core.StandardContext.listenerStart(StandardContext.java:4729)
at org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:5167)
at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:150)
at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:725)
at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:701)
at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:717)
at org.apache.catalina.startup.HostConfig.deployWAR(HostConfig.java:945)
at org.apache.catalina.startup.HostConfig$DeployWar.run(HostConfig.java:1768)
at java.util.concurrent.Executors$RunnableAdapter.call(Unknown Source)
at java.util.concurrent.FutureTask.run(Unknown Source)
at java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source)
at java.lang.Thread.run(Unknown Source)
Caused by: com.mysql.jdbc.exceptions.jdbc4.MySQLSyntaxErrorException: Table 'dhis.programrule' doesn't exist
at sun.reflect.GeneratedConstructorAccessor53.newInstance(Unknown Source)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(Unknown Source)
at java.lang.reflect.Constructor.newInstance(Unknown Source)
at com.mysql.jdbc.Util.handleNewInstance(Util.java:377)
at com.mysql.jdbc.Util.getInstance(Util.java:360)
at com.mysql.jdbc.SQLError.createSQLException(SQLError.java:978)
at com.mysql.jdbc.MysqlIO.checkErrorPacket(MysqlIO.java:3887)
at com.mysql.jdbc.MysqlIO.checkErrorPacket(MysqlIO.java:3823)
at com.mysql.jdbc.MysqlIO.sendCommand(MysqlIO.java:2435)
at com.mysql.jdbc.MysqlIO.sqlQueryDirect(MysqlIO.java:2582)
at com.mysql.jdbc.ConnectionImpl.execSQL(ConnectionImpl.java:2526)
at com.mysql.jdbc.ConnectionImpl.execSQL(ConnectionImpl.java:2484)
at com.mysql.jdbc.StatementImpl.executeQuery(StatementImpl.java:1446)
at com.mchange.v2.c3p0.impl.NewProxyStatement.executeQuery(NewProxyStatement.java:35)
at org.springframework.jdbc.core.JdbcTemplate$1QueryStatementCallback.doInStatement(JdbcTemplate.java:455)
at org.springframework.jdbc.core.JdbcTemplate.execute(JdbcTemplate.java:405)
... 19 more
* INFO 2015-12-07 17:36:57,144 Executing startup routine [6 of 13, runlevel 5]: TableCreator (DefaultStartupRoutineExec
utor.java [localhost-startStop-1])
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Error2: While generating resource tables got the below error, think
the query should be DROP TABLE IF EXISTS _orgunitstructure; Same
applies for all resource tables.
* INFO 2015-12-07 17:41:06,417 [Level: INFO, category: RESOURCETABLE_UPDATE, time: Mon Dec 07 17:41:06 IST 2015, messag
e: Generating resource tables] (InMemoryNotifier.java [taskScheduler-1])
* INFO 2015-12-07 17:41:06,465 Create table SQL: create table _orgunitstructure_temp (organisationunitid integer not nu
ll primary key, organisationunituid character(11), level integer, `idlevel1` integer, `uidlevel1` character(11), `idleve
l2` integer, `uidlevel2` character(11), `idlevel3` integer, `uidlevel3` character(11)); (JdbcResourceTableStore.java [ta
skScheduler-1])
* INFO 2015-12-07 17:41:06,495 Populate table content rows: 203 (JdbcResourceTableStore.java [taskScheduler-1])
* INFO 2015-12-07 17:41:06,546 Create index SQL: create unique index in_orgunitstructure_organisationunituid_VWU2G on _
orgunitstructure_temp(organisationunituid) (JdbcResourceTableStore.java [taskScheduler-1])
* INFO 2015-12-07 17:41:06,582 [Level: ERROR, category: RESOURCETABLE_UPDATE, time: Mon Dec 07 17:41:06 IST 2015, messa
ge: Process failed: StatementCallback; bad SQL grammar [drop table _orgunitstructure;]; nested exception is com.mysql.jd
bc.exceptions.jdbc4.MySQLSyntaxErrorException: Unknown table 'dhis._orgunitstructure'] (InMemoryNotifier.java [tas
kScheduler-1])
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Error3: Tried to copy resource table structures from old db and tried
generate resource table option, this time got the below error:
* INFO 2015-12-07 18:05:19,296 [Level: ERROR, category: RESOURCETABLE_UPDATE, time: Mon Dec 07 18:05:19 IST 2015, messa
ge: Process failed: StatementCallback; bad SQL grammar [create unique index in_dataelementstructure_dataelementuid_M86c6
on _dataelementstructure_temp(dataelementuid);create index in_dataelementstructure_datasetid_fVMFF on _dataelementstruc
ture_temp(datasetid);create index in_dataelementstructure_datasetuid_nsdEu on _dataelementstructure_temp(datasetuid);cre
ate index in_dataelementstructure_periodtypeid_EkjZg on _dataelementstructure_temp(periodtypeid);]; nested exception is
com.mysql.jdbc.exceptions.jdbc4.MySQLSyntaxErrorException: You have an error in your SQL syntax; check the manual that c
orresponds to your MySQL server version for the right syntax to use near 'create index in_dataelementstructure_datasetid
_fVMFF on _dataelementstructure_te' at line 1] (InMemoryNotifier.java [taskScheduler-5])
* ERROR 2015-12-07 18:05:19,319 Unexpected error occurred in scheduled task. (TaskUtils.java [taskScheduler-5])
org.springframework.jdbc.BadSqlGrammarException: StatementCallback; bad SQL grammar [create unique index in_dataelements
tructure_dataelementuid_M86c6 on _dataelementstructure_temp(dataelementuid);create index in_dataelementstructure_dataset
id_fVMFF on _dataelementstructure_temp(datasetid);create index in_dataelementstructure_datasetuid_nsdEu on _dataelements
tructure_temp(datasetuid);create index in_dataelementstructure_periodtypeid_EkjZg on _dataelementstructure_temp(periodty
peid);]; nested exception is com.mysql.jdbc.exceptions.jdbc4.MySQLSyntaxErrorException: You have an error in your SQL sy
ntax; check the manual that corresponds to your MySQL server version for the right syntax to use near 'create index in_d
ataelementstructure_datasetid_fVMFF on _dataelementstructure_te' at line 1
at org.springframework.jdbc.support.SQLErrorCodeSQLExceptionTranslator.doTranslate(SQLErrorCodeSQLExceptionTrans
lator.java:231)
at org.springframework.jdbc.support.AbstractFallbackSQLExceptionTranslator.translate(AbstractFallbackSQLExceptio
nTranslator.java:73)
at org.springframework.jdbc.core.JdbcTemplate.execute(JdbcTemplate.java:416)
at org.springframework.jdbc.core.JdbcTemplate.execute(JdbcTemplate.java:440)
at org.hisp.dhis.resourcetable.jdbc.JdbcResourceTableStore.generateResourceTable(JdbcResourceTableStore.java:118
)
at org.hisp.dhis.resourcetable.DefaultResourceTableService.generateDataElementTable(DefaultResourceTableService.
java:198)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
at java.lang.reflect.Method.invoke(Unknown Source)
at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:317)
at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:
190)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:157)
at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(TransactionInterce
ptor.java:99)
at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransaction(TransactionAspec
tSupport.java:281)
at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:96)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:179)
at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:207)
at com.sun.proxy.$Proxy143.generateDataElementTable(Unknown Source)
at org.hisp.dhis.resourcetable.scheduling.ResourceTableTask.generateAll(ResourceTableTask.java:121)
at org.hisp.dhis.resourcetable.scheduling.ResourceTableTask.run(ResourceTableTask.java:84)
at org.springframework.scheduling.support.DelegatingErrorHandlingRunnable.run(DelegatingErrorHandlingRunnable.ja
va:54)
at java.util.concurrent.Executors$RunnableAdapter.call(Unknown Source)
at java.util.concurrent.FutureTask.run(Unknown Source)
at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.access$201(Unknown Source)
at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(Unknown Source)
at java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source)
at java.lang.Thread.run(Unknown Source)
Caused by: com.mysql.jdbc.exceptions.jdbc4.MySQLSyntaxErrorException: You have an error in your SQL syntax; check the ma
nual that corresponds to your MySQL server version for the right syntax to use near 'create index in_dataelementstructur
e_datasetid_fVMFF on _dataelementstructure_te' at line 1
at sun.reflect.GeneratedConstructorAccessor53.newInstance(Unknown Source)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(Unknown Source)
at java.lang.reflect.Constructor.newInstance(Unknown Source)
at com.mysql.jdbc.Util.handleNewInstance(Util.java:377)
at com.mysql.jdbc.Util.getInstance(Util.java:360)
at com.mysql.jdbc.SQLError.createSQLException(SQLError.java:978)
at com.mysql.jdbc.MysqlIO.checkErrorPacket(MysqlIO.java:3887)
at com.mysql.jdbc.MysqlIO.checkErrorPacket(MysqlIO.java:3823)
at com.mysql.jdbc.MysqlIO.sendCommand(MysqlIO.java:2435)
at com.mysql.jdbc.MysqlIO.sqlQueryDirect(MysqlIO.java:2582)
at com.mysql.jdbc.ConnectionImpl.execSQL(ConnectionImpl.java:2526)
at com.mysql.jdbc.ConnectionImpl.execSQL(ConnectionImpl.java:2484)
at com.mysql.jdbc.StatementImpl.execute(StatementImpl.java:848)
at com.mysql.jdbc.StatementImpl.execute(StatementImpl.java:742)
at com.mchange.v2.c3p0.impl.NewProxyStatement.execute(NewProxyStatement.java:1006)
at org.springframework.jdbc.core.JdbcTemplate$1ExecuteStatementCallback.doInStatement(JdbcTemplate.java:432)
at org.springframework.jdbc.core.JdbcTemplate.execute(JdbcTemplate.java:405)
... 26 more
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