dhis2-devs team mailing list archive

[Calle Hedberg <calle.hedberg@xxxxxxxxx>]

Hi,

I've been battling with a serious problem for some days now, after a DHIS 2
session crashed - presumably due to external reasons like a power
fluctuation or something. I went out for a while after starting that
process - when I got back, I had a black screen of death with a message
about partition table problem. Turned out that message was caused by Win7
boot sequence having changed, so easy to fix - but a subsequent hard disk
partition scan did indicate a number of file fragments etc that were
cleaned out.

DHIS 2 refused to start after that, and it seems like at least one of the
problems was that  the PostgreSQL connection pool somehow had become
damaged (or Hibernate).

So I completely uninstalled PostgreSQL 9.5, Java (both 7 and 8), and
Tomcat, even cleaning up the registry of relevant keys and references, and
then re-installed pgSQL 9.5, Java 7-79, and Tomcat 8.0.30. That cleared up
some of the error messages, but DHIS still refuse to start. The tomcat log
indicates a SEVERE error just after exploding the war file, and the
catalina log looks as follows (war file is 2.21)

I have no idea what
"Exception fixing docBase for context [/dhis]  java.util.zip.ZipException:
invalid CEN header (bad signature)"
actually means. The war file is the same as before, so it looks like
something else got corrupted during that crash. But WHAT?

Any pointers as to what I need to repair or re-install would be
appreciated....

Regards
Calel

11-Feb-2016 11:48:43.677 INFO [localhost-startStop-1]
org.apache.catalina.startup.HostConfig.deployWAR Deploying web application
archive C:\Program Files (x86)\Apache Software Foundation\Tomcat
8.0\webapps\dhis.war
11-Feb-2016 11:48:43.717 SEVERE [localhost-startStop-1]
org.apache.catalina.startup.ContextConfig.beforeStart Exception fixing
docBase for context [/dhis]
 java.util.zip.ZipException: invalid CEN header (bad signature)
at java.util.zip.ZipFile.open(Native Method)
at java.util.zip.ZipFile.<init>(Unknown Source)
at java.util.zip.ZipFile.<init>(Unknown Source)
at java.util.jar.JarFile.<init>(Unknown Source)
at java.util.jar.JarFile.<init>(Unknown Source)
at sun.net.www.protocol.jar.URLJarFile.<init>(Unknown Source)
at sun.net.www.protocol.jar.URLJarFile.getJarFile(Unknown Source)
at sun.net.www.protocol.jar.JarFileFactory.get(Unknown Source)
at sun.net.www.protocol.jar.JarURLConnection.connect(Unknown Source)
at sun.net.www.protocol.jar.JarURLConnection.getJarFile(Unknown Source)
at org.apache.catalina.startup.ExpandWar.expand(ExpandWar.java:130)
at
org.apache.catalina.startup.ContextConfig.fixDocBase(ContextConfig.java:618)
at
org.apache.catalina.startup.ContextConfig.beforeStart(ContextConfig.java:744)
at
org.apache.catalina.startup.ContextConfig.lifecycleEvent(ContextConfig.java:307)
at
org.apache.catalina.util.LifecycleSupport.fireLifecycleEvent(LifecycleSupport.java:95)
at
org.apache.catalina.util.LifecycleBase.fireLifecycleEvent(LifecycleBase.java:90)
at
org.apache.catalina.util.LifecycleBase.setStateInternal(LifecycleBase.java:402)
at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:147)
at
org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:725)
at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:701)
at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:717)
at org.apache.catalina.startup.HostConfig.deployWAR(HostConfig.java:945)
at
org.apache.catalina.startup.HostConfig$DeployWar.run(HostConfig.java:1795)
at java.util.concurrent.Executors$RunnableAdapter.call(Unknown Source)
at java.util.concurrent.FutureTask.run(Unknown Source)
at java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source)
at java.lang.Thread.run(Unknown Source)

11-Feb-2016 11:48:43.727 SEVERE [localhost-startStop-1]
org.apache.catalina.core.ContainerBase.addChildInternal
ContainerBase.addChild: start:
 org.apache.catalina.LifecycleException: Failed to start component
[StandardEngine[Catalina].StandardHost[localhost].StandardContext[/dhis]]
at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:154)
at
org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:725)
at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:701)
at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:717)
at org.apache.catalina.startup.HostConfig.deployWAR(HostConfig.java:945)
at
org.apache.catalina.startup.HostConfig$DeployWar.run(HostConfig.java:1795)
at java.util.concurrent.Executors$RunnableAdapter.call(Unknown Source)
at java.util.concurrent.FutureTask.run(Unknown Source)
at java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source)
at java.lang.Thread.run(Unknown Source)
Caused by: org.apache.catalina.LifecycleException: Failed to start
component [org.apache.catalina.webresources.StandardRoot@1422757]
at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:154)
at
org.apache.catalina.core.StandardContext.resourcesStart(StandardContext.java:4928)
at
org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:5058)
at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:150)
... 10 more
Caused by: org.apache.catalina.LifecycleException: Failed to initialize
component [org.apache.catalina.webresources.JarResourceSet@a62ac5]
at org.apache.catalina.util.LifecycleBase.init(LifecycleBase.java:106)
at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:139)
at
org.apache.catalina.webresources.StandardRoot.startInternal(StandardRoot.java:690)
at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:150)
... 13 more
Caused by: java.lang.IllegalArgumentException: java.util.zip.ZipException:
invalid CEN header (bad signature)
at
org.apache.catalina.webresources.JarResourceSet.initInternal(JarResourceSet.java:96)
at org.apache.catalina.util.LifecycleBase.init(LifecycleBase.java:102)
... 16 more
Caused by: java.util.zip.ZipException: invalid CEN header (bad signature)
at java.util.zip.ZipFile.open(Native Method)
at java.util.zip.ZipFile.<init>(Unknown Source)
at java.util.zip.ZipFile.<init>(Unknown Source)
at java.util.jar.JarFile.<init>(Unknown Source)
at java.util.jar.JarFile.<init>(Unknown Source)
at
org.apache.catalina.webresources.JarResourceSet.initInternal(JarResourceSet.java:88)
... 17 more

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Calle Hedberg

46D Alma Road, 7700 Rosebank, SOUTH AFRICA

Tel/fax (home): +27-21-685-6472

Cell: +27-82-853-5352

Iridium SatPhone: +8816-315-19119

Email: calle.hedberg@xxxxxxxxx

Skype: calle_hedberg

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