dhis2-devs team mailing list archive

[Jose Garcia Muñoz <josemp10@xxxxxxxxx>]

Thanks Lars,

I have run data integrity, but the system has passed "Organisation units
with cyclic references ". I didn't get any errors importing events, but
aggregated... Will try to divide the file in small chunks to try to figure
it out...

Thanks
Jose

On Fri, Oct 14, 2016 at 11:02 AM, Lars Helge Øverland <lars@xxxxxxxxx>
wrote:

> Hi Jose,
>
> my best guess here is a cyclic parent relationship in the org unit
> hierarchy, i.e. you have one or more org units where the one of the
> ancestors are also a child.
>
> Try running data admin > integrity checks and look for "Organisation units
> with cyclic references ", or look for it through SQL.
>
> best regards,
>
> Lars
>
>
> On Fri, Oct 14, 2016 at 1:09 AM, Jose Garcia Muñoz <josemp10@xxxxxxxxx>
> wrote:
>
>>
>> Dear devs,
>>
>> I'm trying to import an XML file (900K) with around 8.000 datavalues in
>> 2.24 (build revision 1502fe2). However, I'm getting 2 different kind of
>> errors during the import... (attached at the end of the email)
>>
>> Any ideas? The only thing I can think of, is the huge number of org.
>> units that this instance has (42.000 org. units) with 8 GB. Would it be
>> related to a memory problem? (although the XML file is very small)
>>
>> I have also selected Preloaded Cache = No
>>
>> Many thanks!
>>
>>
>> *Error 1*
>>
>> * INFO  2016-10-13 21:55:55,780 [Level: INFO, category: DATAVALUE_IMPORT,
>> time: Thu Oct 13 21:55:55 UTC 2016, message: Importing data values]
>> (InMemoryNotifier.java [taskScheduler-7])
>> * ERROR 2016-10-13 22:10:55,332 java.lang.RuntimeException:
>> org.hibernate.PropertyAccessException: Exception occurred inside getter
>> of org.hisp.dhis.organisationunit.OrganisationUnit.path
>>         at org.hisp.dhis.commons.collection.CachingMap.get(CachingMap.
>> java:90)
>>         at org.hisp.dhis.dxf2.datavalueset.DefaultDataValueSetService.s
>> aveDataValueSet(DefaultDataValueSetService.java:954)
>>         at org.hisp.dhis.dxf2.datavalueset.DefaultDataValueSetService.s
>> aveDataValueSet(DefaultDataValueSetService.java:488)
>>         at org.hisp.dhis.dxf2.datavalueset.tasks.ImportDataValueTask.
>> call(ImportDataValueTask.java:102)
>>         at org.hisp.dhis.security.SecurityContextRunnable.run(SecurityC
>> ontextRunnable.java:57)
>>         at org.springframework.scheduling.support.DelegatingErrorHandli
>> ngRunnable.run(DelegatingErrorHandlingRunnable.java:54)
>>         at java.util.concurrent.Executors$RunnableAdapter.call(
>> Executors.java:511)
>>         at java.util.concurrent.FutureTask.run(FutureTask.java:266)
>>         at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFu
>> tureTask.access$201(ScheduledThreadPoolExecutor.java:180)
>>         at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFu
>> tureTask.run(ScheduledThreadPoolExecutor.java:293)
>>         at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPool
>> Executor.java:1142)
>>         at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoo
>> lExecutor.java:617)
>>         at java.lang.Thread.run(Thread.java:745)
>> Caused by: org.hibernate.PropertyAccessException: Exception occurred
>> inside getter of org.hisp.dhis.organisationunit.OrganisationUnit.path
>>         at org.hibernate.property.access.spi.GetterMethodImpl.get(Gette
>> rMethodImpl.java:44)
>>         at org.hibernate.tuple.entity.AbstractEntityTuplizer.getPropert
>> yValues(AbstractEntityTuplizer.java:505)
>>         at org.hibernate.tuple.entity.PojoEntityTuplizer.getPropertyVal
>> ues(PojoEntityTuplizer.java:217)
>>         at org.hibernate.persister.entity.AbstractEntityPersister.getPr
>> opertyValues(AbstractEntityPersister.java:4613)
>>         at org.hibernate.event.internal.DefaultFlushEntityEventListener
>> .getValues(DefaultFlushEntityEventListener.java:178)
>>         at org.hibernate.event.internal.DefaultFlushEntityEventListener
>> .onFlushEntity(DefaultFlushEntityEventListener.java:135)
>>         at org.hibernate.event.internal.AbstractFlushingEventListener.f
>> lushEntities(AbstractFlushingEventListener.java:216)
>>         at org.hibernate.event.internal.AbstractFlushingEventListener.f
>> lushEverythingToExecutions(AbstractFlushingEventListener.java:85)
>>         at org.hibernate.event.internal.DefaultAutoFlushEventListener.o
>> nAutoFlush(DefaultAutoFlushEventListener.java:44)
>>         at org.hibernate.internal.SessionImpl.autoFlushIfRequired(Sessi
>> onImpl.java:1264)
>>         at org.hibernate.internal.SessionImpl.list(SessionImpl.java:1780)
>>         at org.hibernate.internal.CriteriaImpl.list(CriteriaImpl.java:
>> 363)
>>         at org.hibernate.internal.CriteriaImpl.uniqueResult(CriteriaImp
>> l.java:385)
>>         at org.hisp.dhis.dataset.hibernate.HibernateLockExceptionStore.
>> getCount(HibernateLockExceptionStore.java:167)
>>         at org.hisp.dhis.dataset.DefaultDataSetService.isLockedPeriod(D
>> efaultDataSetService.java:384)
>>         at sun.reflect.GeneratedMethodAccessor709.invoke(Unknown Source)
>>         at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMe
>> thodAccessorImpl.java:43)
>>         at java.lang.reflect.Method.invoke(Method.java:498)
>>         at org.springframework.aop.support.AopUtils.invokeJoinpointUsin
>> gReflection(AopUtils.java:302)
>>         at org.springframework.aop.framework.ReflectiveMethodInvocation
>> .invokeJoinpoint(ReflectiveMethodInvocation.java:190)
>>         at org.springframework.aop.framework.ReflectiveMethodInvocation
>> .proceed(ReflectiveMethodInvocation.java:157)
>>         at org.springframework.transaction.interceptor.TransactionInter
>> ceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
>>         at org.springframework.transaction.interceptor.TransactionAspec
>> tSupport.invokeWithinTransaction(TransactionAspectSupport.java:281)
>>         at org.springframework.transaction.interceptor.TransactionInter
>> ceptor.invoke(TransactionInterceptor.java:96)
>>         at org.springframework.aop.framework.ReflectiveMethodInvocation
>> .proceed(ReflectiveMethodInvocation.java:179)
>>         at org.springframework.aop.interceptor.ExposeInvocationIntercep
>> tor.invoke(ExposeInvocationInterceptor.java:92)
>>         at org.springframework.aop.framework.ReflectiveMethodInvocation
>> .proceed(ReflectiveMethodInvocation.java:179)
>>         at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(
>> JdkDynamicAopProxy.java:208)
>>         at com.sun.proxy.$Proxy77.isLockedPeriod(Unknown Source)
>>         at org.hisp.dhis.dxf2.datavalueset.DefaultDataValueSetService.l
>> ambda$saveDataValueSet$14(DefaultDataValueSetService.java:955)
>>         at org.hisp.dhis.commons.collection.CachingMap.get(CachingMap.
>> java:82)
>>         ... 12 more
>> Caused by: java.lang.reflect.InvocationTargetException
>>         at sun.reflect.GeneratedMethodAccessor391.invoke(Unknown Source)
>>         at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMe
>> thodAccessorImpl.java:43)
>>         at java.lang.reflect.Method.invoke(Method.java:498)
>>         at org.hibernate.property.access.spi.GetterMethodImpl.get(Gette
>> rMethodImpl.java:41)
>>         ... 42 more
>> Caused by: java.lang.OutOfMemoryError: GC overhead limit exceeded
>>         at java.lang.AbstractStringBuilder.<init>(AbstractStringBuilder
>> .java:68)
>>         at java.lang.StringBuilder.<init>(StringBuilder.java:101)
>>         at org.apache.commons.lang3.StringUtils.join(StringUtils.java:
>> 4121)
>>         at org.apache.commons.lang3.StringUtils.join(StringUtils.java:
>> 4177)
>>         at org.hisp.dhis.organisationunit.OrganisationUnit.getPath(Orga
>> nisationUnit.java:901)
>>         at sun.reflect.GeneratedMethodAccessor391.invoke(Unknown Source)
>>         at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMe
>> thodAccessorImpl.java:43)
>>         at java.lang.reflect.Method.invoke(Method.java:498)
>>         at org.hibernate.property.access.spi.GetterMethodImpl.get(Gette
>> rMethodImpl.java:41)
>>         at org.hibernate.tuple.entity.AbstractEntityTuplizer.getPropert
>> yValues(AbstractEntityTuplizer.java:505)
>>         at org.hibernate.tuple.entity.PojoEntityTuplizer.getPropertyVal
>> ues(PojoEntityTuplizer.java:217)
>>         at org.hibernate.persister.entity.AbstractEntityPersister.getPr
>> opertyValues(AbstractEntityPersister.java:4613)
>>         at org.hibernate.event.internal.DefaultFlushEntityEventListener
>> .getValues(DefaultFlushEntityEventListener.java:178)
>>         at org.hibernate.event.internal.DefaultFlushEntityEventListener
>> .onFlushEntity(DefaultFlushEntityEventListener.java:135)
>>         at org.hibernate.event.internal.AbstractFlushingEventListener.f
>> lushEntities(AbstractFlushingEventListener.java:216)
>>         at org.hibernate.event.internal.AbstractFlushingEventListener.f
>> lushEverythingToExecutions(AbstractFlushingEventListener.java:85)
>>         at org.hibernate.event.internal.DefaultAutoFlushEventListener.o
>> nAutoFlush(DefaultAutoFlushEventListener.java:44)
>>         at org.hibernate.internal.SessionImpl.autoFlushIfRequired(Sessi
>> onImpl.java:1264)
>>         at org.hibernate.internal.SessionImpl.list(SessionImpl.java:1780)
>>         at org.hibernate.internal.CriteriaImpl.list(CriteriaImpl.java:
>> 363)
>>         at org.hibernate.internal.CriteriaImpl.uniqueResult(CriteriaImp
>> l.java:385)
>>         at org.hisp.dhis.dataset.hibernate.HibernateLockExceptionStore.
>> getCount(HibernateLockExceptionStore.java:167)
>>         at org.hisp.dhis.dataset.DefaultDataSetService.isLockedPeriod(D
>> efaultDataSetService.java:384)
>>         at sun.reflect.GeneratedMethodAccessor709.invoke(Unknown Source)
>>         at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMe
>> thodAccessorImpl.java:43)
>>         at java.lang.reflect.Method.invoke(Method.java:498)
>>         at org.springframework.aop.support.AopUtils.invokeJoinpointUsin
>> gReflection(AopUtils.java:302)
>>         at org.springframework.aop.framework.ReflectiveMethodInvocation
>> .invokeJoinpoint(ReflectiveMethodInvocation.java:190)
>>         at org.springframework.aop.framework.ReflectiveMethodInvocation
>> .proceed(ReflectiveMethodInvocation.java:157)
>>         at org.springframework.transaction.interceptor.TransactionInter
>> ceptor$1.proceedWithInvocation(TransactionInterceptor.java:99)
>>         at org.springframework.transaction.interceptor.TransactionAspec
>> tSupport.invokeWithinTransaction(TransactionAspectSupport.java:281)
>>         at org.springframework.transaction.interceptor.TransactionInter
>> ceptor.invoke(TransactionInterceptor.java:96)
>>  (DefaultDataValueSetService.java [taskScheduler-3])
>>
>> ------------------------------------------------------------
>> -------------------------------------------------
>>
>>
>> *Error 2:*
>>
>> * INFO  2016-10-13 22:47:36,040 [Level: INFO, category: DATAVALUE_IMPORT,
>> time: Thu Oct 13 22:47:36 UTC 2016, message: Importing data values]
>> (InMemoryNotifier.java [taskScheduler-7])
>> CachingMap* INFO  2016-10-13 22:49:58,444 Org unit cache heated after
>> cache miss threshold reached (DefaultDataValueSetService.java
>> [taskScheduler-7])
>> Org unit cache heated after cache miss threshold reached* ERROR
>> 2016-10-13 22:56:14,899 Unable to render Velocity Template, '/main.vm'
>> (CommonsLogger.java [http-apr-8081-exec-1])
>> ClientAbortException:  java.io.IOException
>>         at org.apache.catalina.connector.OutputBuffer.doFlush(OutputBuf
>> fer.java:371)
>>         at org.apache.catalina.connector.OutputBuffer.flush(OutputBuffe
>> r.java:333)
>>         at org.apache.catalina.connector.CoyoteOutputStream.flush(Coyot
>> eOutputStream.java:101)
>>         at org.springframework.security.web.context.OnCommittedResponse
>> Wrapper$SaveContextServletOutputStream.flush(OnCommittedResp
>> onseWrapper.java:437)
>>         at sun.nio.cs.StreamEncoder.implFlush(StreamEncoder.java:297)
>>         at sun.nio.cs.StreamEncoder.flush(StreamEncoder.java:141)
>>         at java.io.OutputStreamWriter.flush(OutputStreamWriter.java:229)
>>         at org.apache.struts2.dispatcher.VelocityResult.doExecute(Veloc
>> ityResult.java:160)
>>         at org.apache.struts2.dispatcher.StrutsResultSupport.execute(St
>> rutsResultSupport.java:191)
>>         at com.opensymphony.xwork2.DefaultActionInvocation.executeResul
>> t(DefaultActionInvocation.java:369)
>>         at com.opensymphony.xwork2.DefaultActionInvocation.invoke(Defau
>> ltActionInvocation.java:273)
>>         at org.hisp.dhis.webportal.interceptor.XWorkPortalUserIntercept
>> or.intercept(XWorkPortalUserInterceptor.java:85)
>>         at com.opensymphony.xwork2.DefaultActionInvocation.invoke(Defau
>> ltActionInvocation.java:244)
>>         at org.hisp.dhis.webportal.interceptor.XWorkPortalModuleInterce
>> ptor.intercept(XWorkPortalModuleInterceptor.java:91)
>>         at com.opensymphony.xwork2.DefaultActionInvocation.invoke(Defau
>> ltActionInvocation.java:244)
>>         at org.hisp.dhis.webportal.interceptor.XWorkPortalMenuIntercept
>> or.intercept(XWorkPortalMenuInterceptor.java:94)
>>         at com.opensymphony.xwork2.DefaultActionInvocation.invoke(Defau
>> ltActionInvocation.java:244)
>>         at org.hisp.dhis.webportal.interceptor.XWorkPortalParamsInterce
>> ptor.intercept(XWorkPortalParamsInterceptor.java:150)
>>         at com.opensymphony.xwork2.DefaultActionInvocation.invoke(Defau
>> ltActionInvocation.java:244)
>>         at org.hisp.dhis.interceptor.ContextInterceptor.intercept(Conte
>> xtInterceptor.java:83)
>>         at com.opensymphony.xwork2.DefaultActionInvocation.invoke(Defau
>> ltActionInvocation.java:244)
>>         at org.hisp.dhis.interceptor.UserSettingInterceptor.intercept(U
>> serSettingInterceptor.java:81)
>>         at com.opensymphony.xwork2.DefaultActionInvocation.invoke(Defau
>> ltActionInvocation.java:244)
>>         at org.hisp.dhis.security.intercept.LoginInterceptor.intercept(
>> LoginInterceptor.java:85)
>>         at com.opensymphony.xwork2.DefaultActionInvocation.invoke(Defau
>> ltActionInvocation.java:244)
>>         at org.hisp.dhis.security.intercept.XWorkSecurityInterceptor.in
>> tercept(XWorkSecurityInterceptor.java:116)
>>         at com.opensymphony.xwork2.DefaultActionInvocation.invoke(Defau
>> ltActionInvocation.java:244)
>>         at org.hisp.dhis.interceptor.SystemSettingInterceptor.intercept
>> (SystemSettingInterceptor.java:115)
>>         at com.opensymphony.xwork2.DefaultActionInvocation.invoke(Defau
>> ltActionInvocation.java:244)
>>         at org.hisp.dhis.interceptor.I18nInterceptor.intercept(I18nInte
>> rceptor.java:139)
>>         at com.opensymphony.xwork2.DefaultActionInvocation.invoke(Defau
>> ltActionInvocation.java:244)
>>         at com.opensymphony.xwork2.interceptor.ParametersInterceptor.do
>> Intercept(ParametersInterceptor.java:229)
>>         at com.opensymphony.xwork2.interceptor.MethodFilterInterceptor.
>> intercept(MethodFilterInterceptor.java:98)
>>         at com.opensymphony.xwork2.DefaultActionInvocation.invoke(Defau
>> ltActionInvocation.java:244)
>>         at com.opensymphony.xwork2.interceptor.StaticParametersIntercep
>> tor.intercept(StaticParametersInterceptor.java:191)
>>         at com.opensymphony.xwork2.DefaultActionInvocation.invoke(Defau
>> ltActionInvocation.java:244)
>>         at org.hisp.dhis.interceptor.ExceptionInterceptor.intercept(Exc
>> eptionInterceptor.java:113)
>>         at com.opensymphony.xwork2.DefaultActionInvocation.invoke(Defau
>> ltActionInvocation.java:244)
>>         at org.apache.struts2.impl.StrutsActionProxy.execute(StrutsActi
>> onProxy.java:54)
>>         at org.apache.struts2.dispatcher.Dispatcher.serviceAction(Dispa
>> tcher.java:564)
>>         at org.apache.struts2.dispatcher.ng.ExecuteOperations.executeAc
>> tion(ExecuteOperations.java:81)
>>         at org.apache.struts2.dispatcher.ng.filter.StrutsPrepareAndExec
>> uteFilter.doFilter(StrutsPrepareAndExecuteFilter.java:99)
>>         at org.apache.catalina.core.ApplicationFilterChain.internalDoFi
>> lter(ApplicationFilterChain.java:241)
>>         at org.apache.catalina.core.ApplicationFilterChain.doFilter(App
>> licationFilterChain.java:208)
>>         at org.springframework.security.web.FilterChainProxy$VirtualFil
>> terChain.doFilter(FilterChainProxy.java:330)
>>         at org.springframework.security.web.access.intercept.FilterSecu
>> rityInterceptor.invoke(FilterSecurityInterceptor.java:118)
>>         at org.springframework.security.web.access.intercept.FilterSecu
>> rityInterceptor.doFilter(FilterSecurityInterceptor.java:84)
>>
>>
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>>
>
>
> --
> Lars Helge Øverland
> Lead developer, DHIS 2
> University of Oslo
> Skype: larshelgeoverland
> lars@xxxxxxxxx
> http://www.dhis2.org <https://www.dhis2.org/>
>
>