dhis2-devs team mailing list archive

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Date
Re: Startup errors in 2.29

To: Calle Hedberg <calle.hedberg@xxxxxxxxx>
From: Lars Helge Øverland <lars@xxxxxxxxx>
Date: Mon, 9 Apr 2018 11:24:13 +0200
Cc: dhis2-devs <dhis2-devs@xxxxxxxxxxxxxxxxxxx>
In-reply-to: <CAPB4dVjtKcEacPG-tKoQbmMZ4H1JY_XM+qDQA2EC6tnc46BGCg@mail.gmail.com>
Glad it's resolved.

Lars

On 9 April 2018 at 11:23, Calle Hedberg <calle.hedberg@xxxxxxxxx> wrote:

> Lars,
>
> Eish - forget about it - was a version startup issue. I accidentally
> started up the 2.29 instance using a 2.27 war file. Too much blood in my
> caffeinated veins, no doubt.
>
> Regards
> Calle
>
>
>
> On 9 April 2018 at 11:21, Lars Helge Øverland <lars@xxxxxxxxx> wrote:
>
>> Hi Calle,
>>
>> this should be handled by the startup routines.
>>
>> Could it be that you have disabled startup routines and then forgot to
>> enable it again when upgrading?
>>
>> regards,
>>
>> Lars
>>
>>
>> On 9 April 2018 at 11:18, Calle Hedberg <calle.hedberg@xxxxxxxxx> wrote:
>>
>>> Hi
>>>
>>> After recently upgrading from 2.28 to 2.29, I noted that the PeriodType
>>> "BiWeekly" has been added to the periodtype table, BUT it generates an
>>> error during startup (see tomcat log below). There are also several SEVERE
>>> log items at the end related to listeners failing to start - but i cannot
>>> see how it affect the system running:
>>>
>>>
>>> * INFO  2018-04-09 11:09:29,180 Executing startup routine [2 of 15,
>>> runlevel 2]: PeriodTypePopulator (DefaultStartupRoutineExecutor.java
>>> [localhost-startStop-1])
>>> * ERROR 2018-04-09 11:09:29,186 org.hibernate.WrongClassException:
>>> Object [id=7119265] was not of the specified subclass
>>> [org.hisp.dhis.period.PeriodType] : Discriminator: BiWeekly
>>>         at org.hibernate.loader.Loader.getInstanceClass(Loader.java:181
>>> 0)
>>>         at org.hibernate.loader.Loader.instanceNotYetLoaded(Loader.java
>>> :1621)
>>>         at org.hibernate.loader.Loader.getRow(Loader.java:1550)
>>>         at org.hibernate.loader.Loader.getRowFromResultSet(Loader.java:
>>> 733)
>>>         at org.hibernate.loader.Loader.processResultSet(Loader.java:978)
>>>         at org.hibernate.loader.Loader.doQuery(Loader.java:936)
>>>         at org.hibernate.loader.Loader.doQueryAndInitializeNonLazyColle
>>> ctions(Loader.java:342)
>>>         at org.hibernate.loader.Loader.doList(Loader.java:2622)
>>>         at org.hibernate.loader.Loader.listUsingQueryCache(Loader.java:
>>> 2464)
>>>         at org.hibernate.loader.Loader.list(Loader.java:2426)
>>>         at org.hibernate.loader.criteria.CriteriaLoader.list(CriteriaLo
>>> ader.java:109)
>>>         at org.hibernate.internal.SessionImpl.list(SessionImpl.java:178
>>> 7)
>>>         at org.hibernate.internal.CriteriaImpl.list(CriteriaImpl.java:3
>>> 63)
>>>         at org.hisp.dhis.period.hibernate.HibernatePeriodStore.getAllPe
>>> riodTypes(HibernatePeriodStore.java:228)
>>>         at org.hisp.dhis.period.PeriodTypePopulator.executeInTransactio
>>> n(PeriodTypePopulator.java:66)
>>>         at org.hisp.dhis.system.startup.TransactionContextStartupRoutin
>>> e$1.doInTransaction(TransactionContextStartupRoutine.java:57)
>>>         at org.springframework.transaction.support.TransactionTemplate.
>>> execute(TransactionTemplate.java:133)
>>>         at org.hisp.dhis.system.startup.TransactionContextStartupRoutin
>>> e.execute(TransactionContextStartupRoutine.java:52)
>>>         at org.hisp.dhis.system.startup.DefaultStartupRoutineExecutor.e
>>> xecute(DefaultStartupRoutineExecutor.java:113)
>>>         at org.hisp.dhis.system.startup.DefaultStartupRoutineExecutor.e
>>> xecute(DefaultStartupRoutineExecutor.java:70)
>>>         at org.hisp.dhis.system.startup.StartupListener.contextInitiali
>>> zed(StartupListener.java:71)
>>>         at org.apache.catalina.core.StandardContext.listenerStart(Stand
>>> ardContext.java:4745)
>>>         at org.apache.catalina.core.StandardContext.startInternal(Stand
>>> ardContext.java:5207)
>>>         at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.j
>>> ava:150)
>>>         at org.apache.catalina.core.ContainerBase.addChildInternal(Cont
>>> ainerBase.java:752)
>>>         at org.apache.catalina.core.ContainerBase.addChild(ContainerBas
>>> e.java:728)
>>>         at org.apache.catalina.core.StandardHost.addChild(StandardHost.
>>> java:734)
>>>         at org.apache.catalina.startup.HostConfig.deployWAR(HostConfig.
>>> java:988)
>>>         at org.apache.catalina.startup.HostConfig$DeployWar.run(HostCon
>>> fig.java:1860)
>>>         at java.util.concurrent.Executors$RunnableAdapter.call(Unknown
>>> Source)
>>>         at java.util.concurrent.FutureTask.run(Unknown Source)
>>>         at java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown
>>> Source)
>>>         at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown
>>> Source)
>>>         at java.lang.Thread.run(Unknown Source)
>>>  (StartupListener.java [localhost-startStop-1])
>>> 09-Apr-2018 11:09:29.186 SEVERE [localhost-startStop-1]
>>> org.apache.catalina.core.StandardContext.startInternal One or more
>>> listeners failed to start. Full details will be found in the appropriate
>>> container log file
>>> 09-Apr-2018 11:09:29.194 SEVERE [localhost-startStop-1]
>>> org.apache.catalina.core.StandardContext.startInternal Context [/dhis]
>>> startup failed due to previous errors
>>> * INFO  2018-04-09 11:09:29,224 De-registering jdbc driver:
>>> org.postgresql.Driver@78fba49a (StartupListener.java
>>> [localhost-startStop-1])
>>> 09-Apr-2018 11:09:29.354 WARNING [localhost-startStop-1]
>>> org.apache.catalina.loader.WebappClassLoaderBase.clearReferencesThreads
>>> The web application [dhis] appears to have started a thread named
>>> [com.google.inject.internal.util.$Finalizer] but has failed to stop it.
>>> This is very likely to create a memory leak. Stack trace of thread:
>>>  java.lang.Object.wait(Native Method)
>>>  java.lang.ref.ReferenceQueue.remove(Unknown Source)
>>>  java.lang.ref.ReferenceQueue.remove(Unknown Source)
>>>  com.google.inject.internal.util.$Finalizer.run(Finalizer.java:114)
>>> 09-Apr-2018 11:09:29.354 SEVERE [localhost-startStop-1]
>>> org.apache.catalina.loader.WebappClassLoaderBase.checkThreadLocalMapForLeaks
>>> The web application [dhis] created a ThreadLocal with key of type
>>> [java.lang.ThreadLocal] (value [java.lang.ThreadLocal@9926dd9]) and a
>>> value of type [org.hibernate.boot.internal.MetadataImpl] (value
>>> [org.hibernate.boot.internal.MetadataImpl@1e8d20a1]) but failed to
>>> remove it when the web application was stopped. Threads are going to be
>>> renewed over time to try and avoid a probable memory leak.
>>> 09-Apr-2018 11:09:29.358 SEVERE [localhost-startStop-1]
>>> org.apache.catalina.loader.WebappClassLoaderBase.checkThreadLocalMapForLeaks
>>> The web application [dhis] created a ThreadLocal with key of type
>>> [java.lang.ThreadLocal] (value [java.lang.ThreadLocal@1a61f7c6]) and a
>>> value of type [org.springframework.security.
>>> core.context.SecurityContextImpl] (value [org.springframework.security.
>>> core.context.SecurityContextImpl@ffffffff: Null authentication]) but
>>> failed to remove it when the web application was stopped. Threads are going
>>> to be renewed over time to try and avoid a probable memory leak.
>>> 09-Apr-2018 11:09:29.384 INFO [localhost-startStop-1]
>>> org.apache.catalina.startup.HostConfig.deployWAR Deployment of web
>>> application archive [C:\Program Files\Apache Software Foundation\Tomcat
>>> 8.5\webapps\dhis.war] has finished in [52,168] ms
>>>
>>> Any advice on the reason for this and/or how to fix it?
>>>
>>> Regards
>>> Calle
>>>
>>> *******************************************
>>>
>>> Calle Hedberg
>>>
>>> 46D Alma Road, 7700 Rosebank, SOUTH AFRICA
>>> <https://maps.google.com/?q=46D+Alma+Road,+7700+Rosebank,+SOUTH+AFRICA&entry=gmail&source=g>
>>>
>>> Tel/fax (home): +27-21-685-6472
>>>
>>> Cell: +27-82-853-5352
>>>
>>> Iridium SatPhone: +8816-315-19119
>>>
>>> Email: calle.hedberg@xxxxxxxxx
>>>
>>> Skype: calle_hedberg
>>>
>>> *******************************************
>>>
>>>
>>> _______________________________________________
>>> Mailing list: https://launchpad.net/~dhis2-devs
>>> Post to     : dhis2-devs@xxxxxxxxxxxxxxxxxxx
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>>> More help   : https://help.launchpad.net/ListHelp
>>>
>>>
>>
>>
>> --
>> Lars Helge Øverland
>> Technical lead, DHIS 2
>> University of Oslo
>> lars@xxxxxxxxx
>> https://www.dhis2.org
>>
>>
>
>
> --
>
> *******************************************
>
> Calle Hedberg
>
> 46D Alma Road, 7700 Rosebank, SOUTH AFRICA
> <https://maps.google.com/?q=46D+Alma+Road,+7700+Rosebank,+SOUTH+AFRICA&entry=gmail&source=g>
>
> Tel/fax (home): +27-21-685-6472
>
> Cell: +27-82-853-5352
>
> Iridium SatPhone: +8816-315-19119
>
> Email: calle.hedberg@xxxxxxxxx
>
> Skype: calle_hedberg
>
> *******************************************
>
>


-- 
Lars Helge Øverland
Technical lead, DHIS 2
University of Oslo
lars@xxxxxxxxx
https://www.dhis2.org
Follow ups

Re: Startup errors in 2.29
From: Calle Hedberg, 2018-04-09
References

Startup errors in 2.29
From: Calle Hedberg, 2018-04-09
Re: Startup errors in 2.29
From: Lars Helge Øverland, 2018-04-09
Re: Startup errors in 2.29
From: Calle Hedberg, 2018-04-09