dhis2-devs team mailing list archive

Thread
Date
Re: latest 2.28 build not working?

To: "'Bob Jolliffe'" <bobjolliffe@xxxxxxxxx>
From: "Bernard Sadaka \(IM Advisor\)" <lib.ima@xxxxxxxxxx>
Date: Wed, 1 Aug 2018 17:00:32 +0300
Cc: 'dhis2-devs' <dhis2-devs@xxxxxxxxxxxxxxxxxxx>
In-reply-to: <CACd=f9e6gExZRR_0PZm+XX+f6kFCP7rR1tEShTk4s=fEdBAQ2w@mail.gmail.com>
Organization: Premiêre Urgence - Aide Médicale Internationale (PU-AMI)
Reply-to: lib.ima@xxxxxxxxxx
Thread-index: AQIdRrDq0X3F4Xm6b/PXrgGgeMLTOwHBE5hBAUoQWHAB51rVVAD5HIdJAJcY3usCG40dWQH9nU/8o8PS9LA=
Thank you Bob and Jason,

Do you think that the bellow section of the log is the problem:?

 

* INFO  2018-08-01 16:56:01,629 Executing startup routine [8 of 15, runlevel 7]: TrackedEntityTableAlteror (DefaultStartupRoutineExecutor.java [localhost-startStop-1])

* ERROR 2018-08-01 16:56:02,498 org.springframework.dao.DuplicateKeyException: StatementCallback; SQL [INSERT INTO trackedentity(trackedentityid,uid, code, created, lastupdated,name, description) values(nextval('hibernate_sequence'),'MCPQUTHX1Ze','Person','2018-08-01','2018-08-01','Person','Person')]; ERROR: duplicate key value violates unique constraint "uk_b0aojuanxabfuylrbc2k6xk20"

  Detail: Key (name)=(Person) already exists.; nested exception is org.postgresql.util.PSQLException: ERROR: duplicate key value violates unique constraint "uk_b0aojuanxabfuylrbc2k6xk20"

  Detail: Key (name)=(Person) already exists.

 

Because after this line all the remaining doesn’t work.

 

Let me know.

 

All the best,

Bernard

 




Bernard Sadaka

Information Management Advisor

Première Urgence - Aide Médicale Internationale

Nehmeh Building, Sanine Street, Chiyah, 3rd Floor

Ain el Remmaneh, Beirut, Lebanon

E-mail:  <mailto:lib.ima@xxxxxxxxxx> lib.ima@xxxxxxxxxx 

Cell: +961 71 004 881 (208)

Skype: imapuami

Website:  <https://www.pu-ami.org/> https://www.pu-ami.org

 

 

From: Bob Jolliffe [mailto:bobjolliffe@xxxxxxxxx] 
Sent: Wednesday, August 1, 2018 03:32 PM
To: lib.ima@xxxxxxxxxx
Cc: Jason Pickering <jason.p.pickering@xxxxxxxxx>; dhis2-devs <dhis2-devs@xxxxxxxxxxxxxxxxxxx>
Subject: Re: [Dhis2-devs] latest 2.28 build not working?

 

OK sorry I was misreading something I read earlier in your log file (which was actually saying there was no such file ROOT.war rather than a bad war).

 

But after that you seem to have placed the war into correct position and started successfully.  It says it has deployed though it is odd that there is no sign in the logs of the usual startup messages.  I am afraid I have no explanation for that.

 

 

On 1 August 2018 at 13:21, Bernard Sadaka (IM Advisor) <lib.ima@xxxxxxxxxx <mailto:lib.ima@xxxxxxxxxx> > wrote:

Dear Bob,

Apparently the unzip command returns: No errors detected in compressed data of ROOT.war (and attached the output).

Please advise.

 

All the best,

Bernard

 




Bernard Sadaka

Information Management Advisor

Première Urgence - Aide Médicale Internationale

Nehmeh Building, Sanine Street, Chiyah, 3rd Floor

Ain el Remmaneh, Beirut, Lebanon

E-mail:  <mailto:lib.ima@xxxxxxxxxx> lib.ima@xxxxxxxxxx 

Cell: +961 71 004 881 (208)

Skype: imapuami

Website:  <https://www.pu-ami.org/> https://www.pu-ami.org

 

 

From: Bob Jolliffe [mailto:bobjolliffe@xxxxxxxxx <mailto:bobjolliffe@xxxxxxxxx> ] 
Sent: Wednesday, August 1, 2018 03:08 PM
To: lib.ima@xxxxxxxxxx <mailto:lib.ima@xxxxxxxxxx> 
Cc: Jason Pickering <jason.p.pickering@xxxxxxxxx <mailto:jason.p.pickering@xxxxxxxxx> >; dhis2-devs <dhis2-devs@xxxxxxxxxxxxxxxxxxx <mailto:dhis2-devs@xxxxxxxxxxxxxxxxxxx> >
Subject: Re: [Dhis2-devs] latest 2.28 build not working?

 

Hi Bernard

 

Your war file is damaged ie. it is not a proper zip file.  Probably interrupted during download.  You need to clear everything out of your webapps directory, download and deploy it again.

 

You can always test if your war file is "good" by running "unzip -t mywarfile.war"

 

This is your current problem.  Having resolved this we may of course see new ones, but one step at a time.

 

Regards

Bob

 

On 1 August 2018 at 12:44, Bernard Sadaka (IM Advisor) <lib.ima@xxxxxxxxxx <mailto:lib.ima@xxxxxxxxxx> > wrote:

Dear Jason,

Please find attached the full logs for today.

I tried several times to load the old WAR file and then the new WAR file and did it multiple times.

Looking forward to your support.

Thank you in advance.

All the best,

Bernard

 




Bernard Sadaka

Information Management Advisor

Première Urgence - Aide Médicale Internationale

Nehmeh Building, Sanine Street, Chiyah, 3rd Floor

Ain el Remmaneh, Beirut, Lebanon

E-mail:  <mailto:lib.ima@xxxxxxxxxx> lib.ima@xxxxxxxxxx 

Cell: +961 71 004 881 (208)

Skype: imapuami

Website:  <https://www.pu-ami.org/> https://www.pu-ami.org

 

 

From: Jason Pickering [mailto:jason.p.pickering@xxxxxxxxx <mailto:jason.p.pickering@xxxxxxxxx> ] 
Sent: Wednesday, August 1, 2018 11:57 AM
To: lib.ima@xxxxxxxxxx <mailto:lib.ima@xxxxxxxxxx> 
Cc: dhis2-devs <dhis2-devs@xxxxxxxxxxxxxxxxxxx <mailto:dhis2-devs@xxxxxxxxxxxxxxxxxxx> >
Subject: Re: [Dhis2-devs] latest 2.28 build not working?

 

Hi Bernard,

 

It looks to me like the application server does not have a connection to the database. Could you restart DHIS2, and post the  entire log from the point of when you restart Tomcat?

 

Best regards,

Jason

 

 

On Wed, Aug 1, 2018 at 9:52 AM Bernard Sadaka (IM Advisor) <lib.ima@xxxxxxxxxx <mailto:lib.ima@xxxxxxxxxx> > wrote:

Dear Jason and All,

Any updates on this?

We would really like to update our 2.28 instance and possibly migrate to 2.30.

Looking forward to hearing from you.

All the best,

Bernard

 

	
Bernard Sadaka

Information Management Advisor

Première Urgence - Aide Médicale Internationale

Nehmeh Building, Sanine Street, Chiyah, 3rd Floor

Ain el Remmaneh, Beirut, Lebanon

E-mail:  <mailto:lib.ima@xxxxxxxxxx> lib.ima@xxxxxxxxxx 

Cell: +961 71 004 881 (208)

Skype: imapuami

Website:  <https://www.pu-ami.org/> https://www.pu-ami.org

 

 

From: Bernard Sadaka (IM Advisor) [mailto:lib.ima@xxxxxxxxxx <mailto:lib.ima@xxxxxxxxxx> ] 
Sent: Wednesday, July 4, 2018 09:45 AM
To: 'Jason Pickering' <jason.p.pickering@xxxxxxxxx <mailto:jason.p.pickering@xxxxxxxxx> >
Cc: 'dhis2-devs' <dhis2-devs@xxxxxxxxxxxxxxxxxxx <mailto:dhis2-devs@xxxxxxxxxxxxxxxxxxx> >
Subject: RE: [Dhis2-devs] latest 2.28 build not working?

 

Dear Jason,

Yes indeed got a few severe errors: (attached are the catalina files of June 21 and this morning too)

Appreciate your support.

 

//////////////21 June2018 SEVERE////////////////

SEVERE: The web application [] appears to have started a thread named [com.google.inject.internal.util.$Finalizer] but has failed to stop it. This is very likely to create a memory leak.

Jun 21, 2018 3:01:00 PM org.apache.catalina.loader.WebappClassLoaderBase clearReferencesThreads

SEVERE: The web application [] appears to have started a thread named [Batik CleanerThread] but has failed to stop it. This is very likely to create a memory leak.

Jun 21, 2018 3:01:00 PM org.apache.catalina.loader.WebappClassLoaderBase clearReferencesThreads

SEVERE: The web application [] appears to have started a thread named [ForkJoinPool.commonPool-worker-0] but has failed to stop it. This is very likely to create a memory leak.

Jun 21, 2018 3:01:00 PM org.apache.catalina.loader.WebappClassLoaderBase checkThreadLocalMapForLeaks

SEVERE: The web application [] created a ThreadLocal with key of type [java.lang.ThreadLocal] (value [java.lang.ThreadLocal@3f0f0f8c]) and a value of type [org.springframework.security.core.context.SecurityContextImpl] (value [org.springframework.security.core.context.SecurityContextImpl@ffffffff: Null authentication]) but failed to remove it when the web application was stopped. Threads are going to be renewed over time to try and avoid a probable memory leak.

Jun 21, 2018 3:01:00 PM org.apache.catalina.loader.WebappClassLoaderBase checkThreadLocalMapForLeaks

SEVERE: Unable to determine string representation of value of type [org.hisp.dhis.user.User]

org.hibernate.LazyInitializationException: failed to lazily initialize a collection of role: org.hisp.dhis.user.User.groups, could not initialize proxy - no Session

                at org.hibernate.collection.internal.AbstractPersistentCollection.throwLazyInitializationException(AbstractPersistentCollection.java:582)

                at org.hibernate.collection.internal.AbstractPersistentCollection.withTemporarySessionIfNeeded(AbstractPersistentCollection.java:201)

                at org.hibernate.collection.internal.AbstractPersistentCollection.initialize(AbstractPersistentCollection.java:561)

                at org.hibernate.collection.internal.AbstractPersistentCollection.read(AbstractPersistentCollection.java:132)

                at org.hibernate.collection.internal.PersistentSet.toString(PersistentSet.java:299)

                at java.lang.String.valueOf(String.java:2994)

                at java.lang.StringBuilder.append(StringBuilder.java:131)

                at org.hisp.dhis.user.User.toString(User.java:661)

                at org.apache.catalina.loader.WebappClassLoaderBase.checkThreadLocalMapForLeaks(WebappClassLoaderBase.java:2734)

                at org.apache.catalina.loader.WebappClassLoaderBase.checkThreadLocalsForLeaks(WebappClassLoaderBase.java:2668)

                at org.apache.catalina.loader.WebappClassLoaderBase.clearReferences(WebappClassLoaderBase.java:2174)

                at org.apache.catalina.loader.WebappClassLoaderBase.stop(WebappClassLoaderBase.java:2068)

                at org.apache.catalina.loader.WebappLoader.stopInternal(WebappLoader.java:661)

                at org.apache.catalina.util.LifecycleBase.stop(LifecycleBase.java:224)

                at org.apache.catalina.core.StandardContext.stopInternal(StandardContext.java:5822)

                at org.apache.catalina.util.LifecycleBase.stop(LifecycleBase.java:224)

                at org.apache.catalina.core.ContainerBase$StopChild.call(ContainerBase.java:1588)

                at org.apache.catalina.core.ContainerBase$StopChild.call(ContainerBase.java:1577)

                at java.util.concurrent.FutureTask.run(FutureTask.java:266)

                at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)

                at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)

                at java.lang.Thread.run(Thread.java:748)

 

Jun 21, 2018 3:01:00 PM org.apache.catalina.loader.WebappClassLoaderBase checkThreadLocalMapForLeaks

SEVERE: The web application [] created a ThreadLocal with key of type [java.lang.ThreadLocal] (value [java.lang.ThreadLocal@faababc]) and a value of type [org.hisp.dhis.user.User] (value [Unknown]) but failed to remove it when the web application was stopped. Threads are going to be renewed over time to try and avoid a probable memory leak.

Jun 21, 2018 3:01:00 PM org.apache.catalina.loader.WebappClassLoaderBase checkThreadLocalMapForLeaks

SEVERE: The web application [] created a ThreadLocal with key of type [com.google.inject.internal.InjectorImpl$1] (value [com.google.inject.internal.InjectorImpl$1@7d46e98]) and a value of type [java.lang.Object[]] (value [[Ljava.lang.Object;@40606281]) but failed to remove it when the web application was stopped. Threads are going to be renewed over time to try and avoid a probable memory leak.

Jun 21, 2018 3:01:00 PM org.apache.catalina.loader.WebappClassLoaderBase checkThreadLocalMapForLeaks

SEVERE: Unable to determine string representation of value of type [org.hisp.dhis.user.User]

org.hibernate.LazyInitializationException: failed to lazily initialize a collection of role: org.hisp.dhis.user.User.groups, could not initialize proxy - no Session

                at org.hibernate.collection.internal.AbstractPersistentCollection.throwLazyInitializationException(AbstractPersistentCollection.java:582)

                at org.hibernate.collection.internal.AbstractPersistentCollection.withTemporarySessionIfNeeded(AbstractPersistentCollection.java:201)

                at org.hibernate.collection.internal.AbstractPersistentCollection.initialize(AbstractPersistentCollection.java:561)

                at org.hibernate.collection.internal.AbstractPersistentCollection.read(AbstractPersistentCollection.java:132)

                at org.hibernate.collection.internal.PersistentSet.toString(PersistentSet.java:299)

                at java.lang.String.valueOf(String.java:2994)

                at java.lang.StringBuilder.append(StringBuilder.java:131)

                at org.hisp.dhis.user.User.toString(User.java:661)

                at org.apache.catalina.loader.WebappClassLoaderBase.checkThreadLocalMapForLeaks(WebappClassLoaderBase.java:2734)

                at org.apache.catalina.loader.WebappClassLoaderBase.checkThreadLocalsForLeaks(WebappClassLoaderBase.java:2668)

                at org.apache.catalina.loader.WebappClassLoaderBase.clearReferences(WebappClassLoaderBase.java:2174)

                at org.apache.catalina.loader.WebappClassLoaderBase.stop(WebappClassLoaderBase.java:2068)

                at org.apache.catalina.loader.WebappLoader.stopInternal(WebappLoader.java:661)

                at org.apache.catalina.util.LifecycleBase.stop(LifecycleBase.java:224)

                at org.apache.catalina.core.StandardContext.stopInternal(StandardContext.java:5822)

                at org.apache.catalina.util.LifecycleBase.stop(LifecycleBase.java:224)

                at org.apache.catalina.core.ContainerBase$StopChild.call(ContainerBase.java:1588)

                at org.apache.catalina.core.ContainerBase$StopChild.call(ContainerBase.java:1577)

                at java.util.concurrent.FutureTask.run(FutureTask.java:266)

                at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)

                at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)

                at java.lang.Thread.run(Thread.java:748)

 

Jun 21, 2018 3:01:00 PM org.apache.catalina.loader.WebappClassLoaderBase checkThreadLocalMapForLeaks

SEVERE: The web application [] created a ThreadLocal with key of type [java.lang.ThreadLocal] (value [java.lang.ThreadLocal@faababc]) and a value of type [org.hisp.dhis.user.User] (value [Unknown]) but failed to remove it when the web application was stopped. Threads are going to be renewed over time to try and avoid a probable memory leak.

Jun 21, 2018 3:01:00 PM org.apache.catalina.loader.WebappClassLoaderBase checkThreadLocalMapForLeaks

SEVERE: Unable to determine string representation of value of type [org.hisp.dhis.user.User]

org.hibernate.LazyInitializationException: failed to lazily initialize a collection of role: org.hisp.dhis.user.User.groups, could not initialize proxy - no Session

                at org.hibernate.collection.internal.AbstractPersistentCollection.throwLazyInitializationException(AbstractPersistentCollection.java:582)

                at org.hibernate.collection.internal.AbstractPersistentCollection.withTemporarySessionIfNeeded(AbstractPersistentCollection.java:201)

                at org.hibernate.collection.internal.AbstractPersistentCollection.initialize(AbstractPersistentCollection.java:561)

                at org.hibernate.collection.internal.AbstractPersistentCollection.read(AbstractPersistentCollection.java:132)

                at org.hibernate.collection.internal.PersistentSet.toString(PersistentSet.java:299)

                at java.lang.String.valueOf(String.java:2994)

                at java.lang.StringBuilder.append(StringBuilder.java:131)

                at org.hisp.dhis.user.User.toString(User.java:661)

                at org.apache.catalina.loader.WebappClassLoaderBase.checkThreadLocalMapForLeaks(WebappClassLoaderBase.java:2734)

                at org.apache.catalina.loader.WebappClassLoaderBase.checkThreadLocalsForLeaks(WebappClassLoaderBase.java:2668)

                at org.apache.catalina.loader.WebappClassLoaderBase.clearReferences(WebappClassLoaderBase.java:2174)

                at org.apache.catalina.loader.WebappClassLoaderBase.stop(WebappClassLoaderBase.java:2068)

                at org.apache.catalina.loader.WebappLoader.stopInternal(WebappLoader.java:661)

                at org.apache.catalina.util.LifecycleBase.stop(LifecycleBase.java:224)

                at org.apache.catalina.core.StandardContext.stopInternal(StandardContext.java:5822)

                at org.apache.catalina.util.LifecycleBase.stop(LifecycleBase.java:224)

                at org.apache.catalina.core.ContainerBase$StopChild.call(ContainerBase.java:1588)

                at org.apache.catalina.core.ContainerBase$StopChild.call(ContainerBase.java:1577)

                at java.util.concurrent.FutureTask.run(FutureTask.java:266)

                at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)

                at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)

                at java.lang.Thread.run(Thread.java:748)

 

Jun 21, 2018 3:01:00 PM org.apache.catalina.loader.WebappClassLoaderBase checkThreadLocalMapForLeaks

SEVERE: The web application [] created a ThreadLocal with key of type [java.lang.ThreadLocal] (value [java.lang.ThreadLocal@faababc]) and a value of type [org.hisp.dhis.user.User] (value [Unknown]) but failed to remove it when the web application was stopped. Threads are going to be renewed over time to try and avoid a probable memory leak.

Jun 21, 2018 3:01:00 PM org.apache.catalina.loader.WebappClassLoaderBase checkThreadLocalMapForLeaks

SEVERE: The web application [] created a ThreadLocal with key of type [com.google.inject.internal.InjectorImpl$1] (value [com.google.inject.internal.InjectorImpl$1@28933881]) and a value of type [java.lang.Object[]] (value [[Ljava.lang.Object;@6ba42378]) but failed to remove it when the web application was stopped. Threads are going to be renewed over time to try and avoid a probable memory leak.

Jun 21, 2018 3:01:00 PM org.apache.catalina.loader.WebappClassLoaderBase checkThreadLocalMapForLeaks

SEVERE: Unable to determine string representation of value of type [org.hisp.dhis.user.User]

org.hibernate.LazyInitializationException: failed to lazily initialize a collection of role: org.hisp.dhis.user.User.groups, could not initialize proxy - no Session

                at org.hibernate.collection.internal.AbstractPersistentCollection.throwLazyInitializationException(AbstractPersistentCollection.java:582)

                at org.hibernate.collection.internal.AbstractPersistentCollection.withTemporarySessionIfNeeded(AbstractPersistentCollection.java:201)

                at org.hibernate.collection.internal.AbstractPersistentCollection.initialize(AbstractPersistentCollection.java:561)

                at org.hibernate.collection.internal.AbstractPersistentCollection.read(AbstractPersistentCollection.java:132)

                at org.hibernate.collection.internal.PersistentSet.toString(PersistentSet.java:299)

                at java.lang.String.valueOf(String.java:2994)

                at java.lang.StringBuilder.append(StringBuilder.java:131)

                at org.hisp.dhis.user.User.toString(User.java:661)

                at org.apache.catalina.loader.WebappClassLoaderBase.checkThreadLocalMapForLeaks(WebappClassLoaderBase.java:2734)

                at org.apache.catalina.loader.WebappClassLoaderBase.checkThreadLocalsForLeaks(WebappClassLoaderBase.java:2668)

                at org.apache.catalina.loader.WebappClassLoaderBase.clearReferences(WebappClassLoaderBase.java:2174)

                at org.apache.catalina.loader.WebappClassLoaderBase.stop(WebappClassLoaderBase.java:2068)

                at org.apache.catalina.loader.WebappLoader.stopInternal(WebappLoader.java:661)

                at org.apache.catalina.util.LifecycleBase.stop(LifecycleBase.java:224)

                at org.apache.catalina.core.StandardContext.stopInternal(StandardContext.java:5822)

                at org.apache.catalina.util.LifecycleBase.stop(LifecycleBase.java:224)

                at org.apache.catalina.core.ContainerBase$StopChild.call(ContainerBase.java:1588)

                at org.apache.catalina.core.ContainerBase$StopChild.call(ContainerBase.java:1577)

                at java.util.concurrent.FutureTask.run(FutureTask.java:266)

                at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)

                at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)

                at java.lang.Thread.run(Thread.java:748)

 

Jun 21, 2018 3:01:00 PM org.apache.catalina.loader.WebappClassLoaderBase checkThreadLocalMapForLeaks

SEVERE: The web application [] created a ThreadLocal with key of type [java.lang.ThreadLocal] (value [java.lang.ThreadLocal@faababc]) and a value of type [org.hisp.dhis.user.User] (value [Unknown]) but failed to remove it when the web application was stopped. Threads are going to be renewed over time to try and avoid a probable memory leak.

Jun 21, 2018 3:01:00 PM org.apache.catalina.loader.WebappClassLoaderBase checkThreadLocalMapForLeaks

SEVERE: Unable to determine string representation of value of type [org.hisp.dhis.user.User]

org.hibernate.LazyInitializationException: failed to lazily initialize a collection of role: org.hisp.dhis.user.User.groups, could not initialize proxy - no Session

                at org.hibernate.collection.internal.AbstractPersistentCollection.throwLazyInitializationException(AbstractPersistentCollection.java:582)

                at org.hibernate.collection.internal.AbstractPersistentCollection.withTemporarySessionIfNeeded(AbstractPersistentCollection.java:201)

                at org.hibernate.collection.internal.AbstractPersistentCollection.initialize(AbstractPersistentCollection.java:561)

                at org.hibernate.collection.internal.AbstractPersistentCollection.read(AbstractPersistentCollection.java:132)

                at org.hibernate.collection.internal.PersistentSet.toString(PersistentSet.java:299)

                at java.lang.String.valueOf(String.java:2994)

                at java.lang.StringBuilder.append(StringBuilder.java:131)

                at org.hisp.dhis.user.User.toString(User.java:661)

                at org.apache.catalina.loader.WebappClassLoaderBase.checkThreadLocalMapForLeaks(WebappClassLoaderBase.java:2734)

                at org.apache.catalina.loader.WebappClassLoaderBase.checkThreadLocalsForLeaks(WebappClassLoaderBase.java:2668)

                at org.apache.catalina.loader.WebappClassLoaderBase.clearReferences(WebappClassLoaderBase.java:2174)

                at org.apache.catalina.loader.WebappClassLoaderBase.stop(WebappClassLoaderBase.java:2068)

                at org.apache.catalina.loader.WebappLoader.stopInternal(WebappLoader.java:661)

                at org.apache.catalina.util.LifecycleBase.stop(LifecycleBase.java:224)

                at org.apache.catalina.core.StandardContext.stopInternal(StandardContext.java:5822)

                at org.apache.catalina.util.LifecycleBase.stop(LifecycleBase.java:224)

                at org.apache.catalina.core.ContainerBase$StopChild.call(ContainerBase.java:1588)

                at org.apache.catalina.core.ContainerBase$StopChild.call(ContainerBase.java:1577)

                at java.util.concurrent.FutureTask.run(FutureTask.java:266)

                at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)

                at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)

                at java.lang.Thread.run(Thread.java:748)

 

Jun 21, 2018 3:01:00 PM org.apache.catalina.loader.WebappClassLoaderBase checkThreadLocalMapForLeaks

SEVERE: The web application [] created a ThreadLocal with key of type [java.lang.ThreadLocal] (value [java.lang.ThreadLocal@faababc]) and a value of type [org.hisp.dhis.user.User] (value [Unknown]) but failed to remove it when the web application was stopped. Threads are going to be renewed over time to try and avoid a probable memory leak.

Jun 21, 2018 3:01:00 PM org.apache.catalina.loader.WebappClassLoaderBase checkThreadLocalMapForLeaks

SEVERE: The web application [] created a ThreadLocal with key of type [com.google.inject.internal.InjectorImpl$1] (value [com.google.inject.internal.InjectorImpl$1@7d46e98]) and a value of type [java.lang.Object[]] (value [[Ljava.lang.Object;@5f5747c8]) but failed to remove it when the web application was stopped. Threads are going to be renewed over time to try and avoid a probable memory leak.

Jun 21, 2018 3:01:00 PM org.apache.catalina.loader.WebappClassLoaderBase checkThreadLocalMapForLeaks

SEVERE: Unable to determine string representation of value of type [org.hisp.dhis.user.User]

org.hibernate.LazyInitializationException: failed to lazily initialize a collection of role: org.hisp.dhis.user.User.groups, could not initialize proxy - no Session

                at org.hibernate.collection.internal.AbstractPersistentCollection.throwLazyInitializationException(AbstractPersistentCollection.java:582)

                at org.hibernate.collection.internal.AbstractPersistentCollection.withTemporarySessionIfNeeded(AbstractPersistentCollection.java:201)

                at org.hibernate.collection.internal.AbstractPersistentCollection.initialize(AbstractPersistentCollection.java:561)

                at org.hibernate.collection.internal.AbstractPersistentCollection.read(AbstractPersistentCollection.java:132)

                at org.hibernate.collection.internal.PersistentSet.toString(PersistentSet.java:299)

                at java.lang.String.valueOf(String.java:2994)

                at java.lang.StringBuilder.append(StringBuilder.java:131)

                at org.hisp.dhis.user.User.toString(User.java:661)

                at org.apache.catalina.loader.WebappClassLoaderBase.checkThreadLocalMapForLeaks(WebappClassLoaderBase.java:2734)

                at org.apache.catalina.loader.WebappClassLoaderBase.checkThreadLocalsForLeaks(WebappClassLoaderBase.java:2668)

                at org.apache.catalina.loader.WebappClassLoaderBase.clearReferences(WebappClassLoaderBase.java:2174)

                at org.apache.catalina.loader.WebappClassLoaderBase.stop(WebappClassLoaderBase.java:2068)

                at org.apache.catalina.loader.WebappLoader.stopInternal(WebappLoader.java:661)

                at org.apache.catalina.util.LifecycleBase.stop(LifecycleBase.java:224)

                at org.apache.catalina.core.StandardContext.stopInternal(StandardContext.java:5822)

                at org.apache.catalina.util.LifecycleBase.stop(LifecycleBase.java:224)

                at org.apache.catalina.core.ContainerBase$StopChild.call(ContainerBase.java:1588)

                at org.apache.catalina.core.ContainerBase$StopChild.call(ContainerBase.java:1577)

                at java.util.concurrent.FutureTask.run(FutureTask.java:266)

                at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)

                at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)

                at java.lang.Thread.run(Thread.java:748)

 

Jun 21, 2018 3:01:00 PM org.apache.catalina.loader.WebappClassLoaderBase checkThreadLocalMapForLeaks

SEVERE: The web application [] created a ThreadLocal with key of type [java.lang.ThreadLocal] (value [java.lang.ThreadLocal@faababc]) and a value of type [org.hisp.dhis.user.User] (value [Unknown]) but failed to remove it when the web application was stopped. Threads are going to be renewed over time to try and avoid a probable memory leak.

Jun 21, 2018 3:01:00 PM org.apache.catalina.loader.WebappClassLoaderBase checkThreadLocalMapForLeaks

SEVERE: Unable to determine string representation of value of type [org.hisp.dhis.user.User]

org.hibernate.LazyInitializationException: failed to lazily initialize a collection of role: org.hisp.dhis.user.User.groups, could not initialize proxy - no Session

                at org.hibernate.collection.internal.AbstractPersistentCollection.throwLazyInitializationException(AbstractPersistentCollection.java:582)

                at org.hibernate.collection.internal.AbstractPersistentCollection.withTemporarySessionIfNeeded(AbstractPersistentCollection.java:201)

                at org.hibernate.collection.internal.AbstractPersistentCollection.initialize(AbstractPersistentCollection.java:561)

                at org.hibernate.collection.internal.AbstractPersistentCollection.read(AbstractPersistentCollection.java:132)

                at org.hibernate.collection.internal.PersistentSet.toString(PersistentSet.java:299)

                at java.lang.String.valueOf(String.java:2994)

                at java.lang.StringBuilder.append(StringBuilder.java:131)

                at org.hisp.dhis.user.User.toString(User.java:661)

                at org.apache.catalina.loader.WebappClassLoaderBase.checkThreadLocalMapForLeaks(WebappClassLoaderBase.java:2734)

                at org.apache.catalina.loader.WebappClassLoaderBase.checkThreadLocalsForLeaks(WebappClassLoaderBase.java:2668)

                at org.apache.catalina.loader.WebappClassLoaderBase.clearReferences(WebappClassLoaderBase.java:2174)

                at org.apache.catalina.loader.WebappClassLoaderBase.stop(WebappClassLoaderBase.java:2068)

                at org.apache.catalina.loader.WebappLoader.stopInternal(WebappLoader.java:661)

                at org.apache.catalina.util.LifecycleBase.stop(LifecycleBase.java:224)

                at org.apache.catalina.core.StandardContext.stopInternal(StandardContext.java:5822)

                at org.apache.catalina.util.LifecycleBase.stop(LifecycleBase.java:224)

                at org.apache.catalina.core.ContainerBase$StopChild.call(ContainerBase.java:1588)

                at org.apache.catalina.core.ContainerBase$StopChild.call(ContainerBase.java:1577)

                at java.util.concurrent.FutureTask.run(FutureTask.java:266)

                at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)

                at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)

                at java.lang.Thread.run(Thread.java:748)

 

Jun 21, 2018 3:01:00 PM org.apache.catalina.loader.WebappClassLoaderBase checkThreadLocalMapForLeaks

SEVERE: The web application [] created a ThreadLocal with key of type [java.lang.ThreadLocal] (value [java.lang.ThreadLocal@faababc]) and a value of type [org.hisp.dhis.user.User] (value [Unknown]) but failed to remove it when the web application was stopped. Threads are going to be renewed over time to try and avoid a probable memory leak.

Jun 21, 2018 3:01:00 PM org.apache.catalina.loader.WebappClassLoaderBase checkThreadLocalMapForLeaks

SEVERE: Unable to determine string representation of value of type [org.hisp.dhis.user.User]

org.hibernate.LazyInitializationException: failed to lazily initialize a collection of role: org.hisp.dhis.user.User.groups, could not initialize proxy - no Session

                at org.hibernate.collection.internal.AbstractPersistentCollection.throwLazyInitializationException(AbstractPersistentCollection.java:582)

                at org.hibernate.collection.internal.AbstractPersistentCollection.withTemporarySessionIfNeeded(AbstractPersistentCollection.java:201)

                at org.hibernate.collection.internal.AbstractPersistentCollection.initialize(AbstractPersistentCollection.java:561)

                at org.hibernate.collection.internal.AbstractPersistentCollection.read(AbstractPersistentCollection.java:132)

                at org.hibernate.collection.internal.PersistentSet.toString(PersistentSet.java:299)

                at java.lang.String.valueOf(String.java:2994)

                at java.lang.StringBuilder.append(StringBuilder.java:131)

                at org.hisp.dhis.user.User.toString(User.java:661)

                at org.apache.catalina.loader.WebappClassLoaderBase.checkThreadLocalMapForLeaks(WebappClassLoaderBase.java:2734)

                at org.apache.catalina.loader.WebappClassLoaderBase.checkThreadLocalsForLeaks(WebappClassLoaderBase.java:2668)

                at org.apache.catalina.loader.WebappClassLoaderBase.clearReferences(WebappClassLoaderBase.java:2174)

                at org.apache.catalina.loader.WebappClassLoaderBase.stop(WebappClassLoaderBase.java:2068)

                at org.apache.catalina.loader.WebappLoader.stopInternal(WebappLoader.java:661)

                at org.apache.catalina.util.LifecycleBase.stop(LifecycleBase.java:224)

                at org.apache.catalina.core.StandardContext.stopInternal(StandardContext.java:5822)

                at org.apache.catalina.util.LifecycleBase.stop(LifecycleBase.java:224)

                at org.apache.catalina.core.ContainerBase$StopChild.call(ContainerBase.java:1588)

                at org.apache.catalina.core.ContainerBase$StopChild.call(ContainerBase.java:1577)

                at java.util.concurrent.FutureTask.run(FutureTask.java:266)

                at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)

                at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)

                at java.lang.Thread.run(Thread.java:748)

 

Jun 21, 2018 3:01:00 PM org.apache.catalina.loader.WebappClassLoaderBase checkThreadLocalMapForLeaks

SEVERE: The web application [] created a ThreadLocal with key of type [java.lang.ThreadLocal] (value [java.lang.ThreadLocal@faababc]) and a value of type [org.hisp.dhis.user.User] (value [Unknown]) but failed to remove it when the web application was stopped. Threads are going to be renewed over time to try and avoid a probable memory leak.

Jun 21, 2018 3:01:00 PM org.apache.catalina.loader.WebappClassLoaderBase checkThreadLocalMapForLeaks

SEVERE: Unable to determine string representation of value of type [org.hisp.dhis.user.User]

org.hibernate.LazyInitializationException: failed to lazily initialize a collection of role: org.hisp.dhis.user.User.groups, could not initialize proxy - no Session

                at org.hibernate.collection.internal.AbstractPersistentCollection.throwLazyInitializationException(AbstractPersistentCollection.java:582)

                at org.hibernate.collection.internal.AbstractPersistentCollection.withTemporarySessionIfNeeded(AbstractPersistentCollection.java:201)

                at org.hibernate.collection.internal.AbstractPersistentCollection.initialize(AbstractPersistentCollection.java:561)

                at org.hibernate.collection.internal.AbstractPersistentCollection.read(AbstractPersistentCollection.java:132)

                at org.hibernate.collection.internal.PersistentSet.toString(PersistentSet.java:299)

                at java.lang.String.valueOf(String.java:2994)

                at java.lang.StringBuilder.append(StringBuilder.java:131)

                at org.hisp.dhis.user.User.toString(User.java:661)

                at org.apache.catalina.loader.WebappClassLoaderBase.checkThreadLocalMapForLeaks(WebappClassLoaderBase.java:2734)

                at org.apache.catalina.loader.WebappClassLoaderBase.checkThreadLocalsForLeaks(WebappClassLoaderBase.java:2668)

                at org.apache.catalina.loader.WebappClassLoaderBase.clearReferences(WebappClassLoaderBase.java:2174)

                at org.apache.catalina.loader.WebappClassLoaderBase.stop(WebappClassLoaderBase.java:2068)

                at org.apache.catalina.loader.WebappLoader.stopInternal(WebappLoader.java:661)

                at org.apache.catalina.util.LifecycleBase.stop(LifecycleBase.java:224)

                at org.apache.catalina.core.StandardContext.stopInternal(StandardContext.java:5822)

                at org.apache.catalina.util.LifecycleBase.stop(LifecycleBase.java:224)

                at org.apache.catalina.core.ContainerBase$StopChild.call(ContainerBase.java:1588)

                at org.apache.catalina.core.ContainerBase$StopChild.call(ContainerBase.java:1577)

                at java.util.concurrent.FutureTask.run(FutureTask.java:266)

                at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)

                at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)

                at java.lang.Thread.run(Thread.java:748)

 

Jun 21, 2018 3:01:00 PM org.apache.catalina.loader.WebappClassLoaderBase checkThreadLocalMapForLeaks

SEVERE: The web application [] created a ThreadLocal with key of type [java.lang.ThreadLocal] (value [java.lang.ThreadLocal@faababc]) and a value of type [org.hisp.dhis.user.User] (value [Unknown]) but failed to remove it when the web application was stopped. Threads are going to be renewed over time to try and avoid a probable memory leak.

Jun 21, 2018 3:01:00 PM org.apache.catalina.loader.WebappClassLoaderBase checkThreadLocalMapForLeaks

SEVERE: Unable to determine string representation of value of type [org.hisp.dhis.user.User]

org.hibernate.LazyInitializationException: failed to lazily initialize a collection of role: org.hisp.dhis.user.User.groups, could not initialize proxy - no Session

                at org.hibernate.collection.internal.AbstractPersistentCollection.throwLazyInitializationException(AbstractPersistentCollection.java:582)

                at org.hibernate.collection.internal.AbstractPersistentCollection.withTemporarySessionIfNeeded(AbstractPersistentCollection.java:201)

                at org.hibernate.collection.internal.AbstractPersistentCollection.initialize(AbstractPersistentCollection.java:561)

                at org.hibernate.collection.internal.AbstractPersistentCollection.read(AbstractPersistentCollection.java:132)

                at org.hibernate.collection.internal.PersistentSet.toString(PersistentSet.java:299)

                at java.lang.String.valueOf(String.java:2994)

                at java.lang.StringBuilder.append(StringBuilder.java:131)

                at org.hisp.dhis.user.User.toString(User.java:661)

                at org.apache.catalina.loader.WebappClassLoaderBase.checkThreadLocalMapForLeaks(WebappClassLoaderBase.java:2734)

                at org.apache.catalina.loader.WebappClassLoaderBase.checkThreadLocalsForLeaks(WebappClassLoaderBase.java:2668)

                at org.apache.catalina.loader.WebappClassLoaderBase.clearReferences(WebappClassLoaderBase.java:2174)

                at org.apache.catalina.loader.WebappClassLoaderBase.stop(WebappClassLoaderBase.java:2068)

                at org.apache.catalina.loader.WebappLoader.stopInternal(WebappLoader.java:661)

                at org.apache.catalina.util.LifecycleBase.stop(LifecycleBase.java:224)

                at org.apache.catalina.core.StandardContext.stopInternal(StandardContext.java:5822)

                at org.apache.catalina.util.LifecycleBase.stop(LifecycleBase.java:224)

                at org.apache.catalina.core.ContainerBase$StopChild.call(ContainerBase.java:1588)

                at org.apache.catalina.core.ContainerBase$StopChild.call(ContainerBase.java:1577)

                at java.util.concurrent.FutureTask.run(FutureTask.java:266)

                at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)

                at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)

                at java.lang.Thread.run(Thread.java:748)

 

Jun 21, 2018 3:01:00 PM org.apache.catalina.loader.WebappClassLoaderBase checkThreadLocalMapForLeaks

SEVERE: The web application [] created a ThreadLocal with key of type [java.lang.ThreadLocal] (value [java.lang.ThreadLocal@faababc]) and a value of type [org.hisp.dhis.user.User] (value [Unknown]) but failed to remove it when the web application was stopped. Threads are going to be renewed over time to try and avoid a probable memory leak.

///////////////////////////////////////////////////

 

//////////////////04Jul2018 SEVERE/////////////////////

SEVERE: One or more listeners failed to start. Full details will be found in the appropriate container log file

Jul 04, 2018 9:13:10 AM org.apache.catalina.core.StandardContext startInternal

SEVERE: Context [] startup failed due to previous errors

Jul 04, 2018 9:13:11 AM org.apache.catalina.loader.WebappClassLoaderBase clearReferencesThreads

SEVERE: The web application [] appears to have started a thread named [com.google.inject.internal.util.$Finalizer] but has failed to stop it. This is very likely to create a memory leak.

Jul 04, 2018 9:13:11 AM org.apache.catalina.loader.WebappClassLoaderBase checkThreadLocalMapForLeaks

SEVERE: The web application [] created a ThreadLocal with key of type [com.google.inject.internal.InjectorImpl$1] (value [com.google.inject.internal.InjectorImpl$1@dd1242b]) and a value of type [java.lang.Object[]] (value [[Ljava.lang.Object;@49e97e84]) but failed to remove it when the web application was stopped. Threads are going to be renewed over time to try and avoid a probable memory leak.

Jul 04, 2018 9:13:11 AM org.apache.catalina.loader.WebappClassLoaderBase checkThreadLocalMapForLeaks

SEVERE: The web application [] created a ThreadLocal with key of type [java.lang.ThreadLocal] (value [java.lang.ThreadLocal@65f6dd45]) and a value of type [org.hibernate.boot.internal.MetadataImpl] (value [org.hibernate.boot.internal.MetadataImpl@6b671594]) but failed to remove it when the web application was stopped. Threads are going to be renewed over time to try and avoid a probable memory leak.

Jul 04, 2018 9:13:11 AM org.apache.catalina.loader.WebappClassLoaderBase checkThreadLocalMapForLeaks

SEVERE: The web application [] created a ThreadLocal with key of type [java.lang.ThreadLocal] (value [java.lang.ThreadLocal@6f9394af]) and a value of type [org.springframework.security.core.context.SecurityContextImpl] (value [org.springframework.security.core.context.SecurityContextImpl@ffffffff: Null authentication]) but failed to remove it when the web application was stopped. Threads are going to be renewed over time to try and avoid a probable memory leak.

Jul 04, 2018 9:13:11 AM org.apache.catalina.loader.WebappClassLoaderBase checkThreadLocalMapForLeaks

SEVERE: The web application [] created a ThreadLocal with key of type [com.google.inject.internal.InjectorImpl$1] (value [com.google.inject.internal.InjectorImpl$1@6d8cda87]) and a value of type [java.lang.Object[]] (value [[Ljava.lang.Object;@3ec33e86]) but failed to remove it when the web application was stopped. Threads are going to be renewed over time to try and avoid a probable memory leak.

Jul 04, 2018 9:13:11 AM org.apache.catalina.startup.HostConfig deployWAR

//////////////////////////////////////////////////////////

 

Thank you in advance for your help.

All the best,

Bernard

 

	
Bernard Sadaka

Information Management Advisor

Première Urgence - Aide Médicale Internationale

Nehmeh Building, Sanine Street, Chiyah, 3rd Floor

Ain el Remmaneh, Beirut, Lebanon

E-mail:  <mailto:lib.ima@xxxxxxxxxx> lib.ima@xxxxxxxxxx 

Cell: +961 71 004 881 (208)

Skype: imapuami

Website:  <https://www.pu-ami.org/> https://www.pu-ami.org

 

 

From: Jason Pickering [mailto:jason.p.pickering@xxxxxxxxx] 
Sent: Thursday, June 21, 2018 05:23 PM
To: lib.ima@xxxxxxxxxx <mailto:lib.ima@xxxxxxxxxx> 
Cc: dhis2-devs <dhis2-devs@xxxxxxxxxxxxxxxxxxx <mailto:dhis2-devs@xxxxxxxxxxxxxxxxxxx> >
Subject: Re: [Dhis2-devs] latest 2.28 build not working?

 

Hi Bernard,


Could you provide more details? Did you get an error in the server logs?

 

Regards,

Jason

 

On Thu, Jun 21, 2018 at 2:30 PM Bernard Sadaka (IM Advisor) <lib.ima@xxxxxxxxxx <mailto:lib.ima@xxxxxxxxxx> > wrote:

Dear Developpers,

Today, 30 minutes ago (noon UTC), I tried to deploy the latest 2.28 .war ( available at: 




 

-- 

Jason P. Pickering
email: jason.p.pickering@xxxxxxxxx <mailto:jason.p.pickering@xxxxxxxxx> 
tel:+46764147049


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Follow ups

Re: latest 2.28 build not working?
From: Bob Jolliffe, 2018-08-01
References

latest 2.28 build not working?
From: Bernard Sadaka (IM Advisor), 2018-06-21
Re: latest 2.28 build not working?
From: Jason Pickering, 2018-06-21
Re: latest 2.28 build not working?
From: Bernard Sadaka (IM Advisor), 2018-08-01
Re: latest 2.28 build not working?
From: Jason Pickering, 2018-08-01
Re: latest 2.28 build not working?
From: Bernard Sadaka (IM Advisor), 2018-08-01
Re: latest 2.28 build not working?
From: Bob Jolliffe, 2018-08-01
Re: latest 2.28 build not working?
From: Bernard Sadaka (IM Advisor), 2018-08-01
Re: latest 2.28 build not working?
From: Bob Jolliffe, 2018-08-01