dhis2-devs team mailing list archive
-
dhis2-devs team
-
Mailing list archive
-
Message #51581
Re: latest 2.28 build not working?
One more thing:
I ran this query on the original DB before the update from Person to Persons:
update trackedentity set (uid,code,name,description)=('MCPQUTHX1Ze','Person','Person','Person') where name='Person';
And the use of the updated WAR file worked like a charm.
I guess the problem was that my tracked entity was using a different UID (PVtZiDT5RoB) than the one in the updated WAR file ('MCPQUTHX1Ze') hence the error.
I did all the above on the development server, and now I will deploy it on the production server.
Thank you again for your amazing support and patience!
All the best,
Bernard
Bernard Sadaka
Information Management Advisor
Première Urgence - Aide Médicale Internationale
Nehmeh Building, Sanine Street, Chiyah, 3rd Floor
Ain el Remmaneh, Beirut, Lebanon
E-mail: <mailto:lib.ima@xxxxxxxxxx> lib.ima@xxxxxxxxxx
Cell: +961 71 004 881 (208)
Skype: imapuami
Website: <https://www.pu-ami.org/> https://www.pu-ami.org
From: Bernard Sadaka (IM Advisor) [mailto:lib.ima@xxxxxxxxxx]
Sent: Thursday, August 2, 2018 10:10 AM
To: 'Bob Jolliffe' <bobjolliffe@xxxxxxxxx>
Cc: 'Jason Pickering' <jason.p.pickering@xxxxxxxxx>; 'dhis2-devs' <dhis2-devs@xxxxxxxxxxxxxxxxxxx>
Subject: RE: [Dhis2-devs] latest 2.28 build not working?
Thank you Bob,
It worked!
In order to preserve my DB integrity I ran this query instead:
update trackedentity set name='Persons' where name='Person';
And it worked.
I think the launch script was trying to create the trackedentity named ‘Person’ eventhough it existed.
Thank you for the help.
Should I log this error in Jira?
All the best,
Bernard
Bernard Sadaka
Information Management Advisor
Première Urgence - Aide Médicale Internationale
Nehmeh Building, Sanine Street, Chiyah, 3rd Floor
Ain el Remmaneh, Beirut, Lebanon
E-mail: <mailto:lib.ima@xxxxxxxxxx> lib.ima@xxxxxxxxxx
Cell: +961 71 004 881 (208)
Skype: imapuami
Website: <https://www.pu-ami.org/> https://www.pu-ami.org
From: Bob Jolliffe [mailto:bobjolliffe@xxxxxxxxx]
Sent: Wednesday, August 1, 2018 05:16 PM
To: lib.ima@xxxxxxxxxx <mailto:lib.ima@xxxxxxxxxx>
Cc: Jason Pickering <jason.p.pickering@xxxxxxxxx <mailto:jason.p.pickering@xxxxxxxxx> >; dhis2-devs <dhis2-devs@xxxxxxxxxxxxxxxxxxx <mailto:dhis2-devs@xxxxxxxxxxxxxxxxxxx> >
Subject: Re: [Dhis2-devs] latest 2.28 build not working?
It might be. Possibly this is a consequence of moving backwards and forwards again between versions. why don't you try to "delete from trackedentity where name='Person'" and try again?
(I am assuming you have made backup of your database)
On 1 August 2018 at 15:00, Bernard Sadaka (IM Advisor) <lib.ima@xxxxxxxxxx <mailto:lib.ima@xxxxxxxxxx> > wrote:
Thank you Bob and Jason,
Do you think that the bellow section of the log is the problem:?
* INFO 2018-08-01 16:56:01,629 Executing startup routine [8 of 15, runlevel 7]: TrackedEntityTableAlteror (DefaultStartupRoutineExecutor.java [localhost-startStop-1])
* ERROR 2018-08-01 16:56:02,498 org.springframework.dao.DuplicateKeyException: StatementCallback; SQL [INSERT INTO trackedentity(trackedentityid,uid, code, created, lastupdated,name, description) values(nextval('hibernate_sequence'),'MCPQUTHX1Ze','Person','2018-08-01','2018-08-01','Person','Person')]; ERROR: duplicate key value violates unique constraint "uk_b0aojuanxabfuylrbc2k6xk20"
Detail: Key (name)=(Person) already exists.; nested exception is org.postgresql.util.PSQLException: ERROR: duplicate key value violates unique constraint "uk_b0aojuanxabfuylrbc2k6xk20"
Detail: Key (name)=(Person) already exists.
Because after this line all the remaining doesn’t work.
Let me know.
All the best,
Bernard
Bernard Sadaka
Information Management Advisor
Première Urgence - Aide Médicale Internationale
Nehmeh Building, Sanine Street, Chiyah, 3rd Floor
Ain el Remmaneh, Beirut, Lebanon
E-mail: <mailto:lib.ima@xxxxxxxxxx> lib.ima@xxxxxxxxxx
Cell: +961 71 004 881 (208)
Skype: imapuami
Website: <https://www.pu-ami.org/> https://www.pu-ami.org
From: Bob Jolliffe [mailto:bobjolliffe@xxxxxxxxx <mailto:bobjolliffe@xxxxxxxxx> ]
Sent: Wednesday, August 1, 2018 03:32 PM
To: lib.ima@xxxxxxxxxx <mailto:lib.ima@xxxxxxxxxx>
Cc: Jason Pickering <jason.p.pickering@xxxxxxxxx <mailto:jason.p.pickering@xxxxxxxxx> >; dhis2-devs <dhis2-devs@xxxxxxxxxxxxxxxxxxx <mailto:dhis2-devs@xxxxxxxxxxxxxxxxxxx> >
Subject: Re: [Dhis2-devs] latest 2.28 build not working?
OK sorry I was misreading something I read earlier in your log file (which was actually saying there was no such file ROOT.war rather than a bad war).
But after that you seem to have placed the war into correct position and started successfully. It says it has deployed though it is odd that there is no sign in the logs of the usual startup messages. I am afraid I have no explanation for that.
On 1 August 2018 at 13:21, Bernard Sadaka (IM Advisor) <lib.ima@xxxxxxxxxx <mailto:lib.ima@xxxxxxxxxx> > wrote:
Dear Bob,
Apparently the unzip command returns: No errors detected in compressed data of ROOT.war (and attached the output).
Please advise.
All the best,
Bernard
Bernard Sadaka
Information Management Advisor
Première Urgence - Aide Médicale Internationale
Nehmeh Building, Sanine Street, Chiyah, 3rd Floor
Ain el Remmaneh, Beirut, Lebanon
E-mail: <mailto:lib.ima@xxxxxxxxxx> lib.ima@xxxxxxxxxx
Cell: +961 71 004 881 (208)
Skype: imapuami
Website: <https://www.pu-ami.org/> https://www.pu-ami.org
From: Bob Jolliffe [mailto:bobjolliffe@xxxxxxxxx <mailto:bobjolliffe@xxxxxxxxx> ]
Sent: Wednesday, August 1, 2018 03:08 PM
To: lib.ima@xxxxxxxxxx <mailto:lib.ima@xxxxxxxxxx>
Cc: Jason Pickering <jason.p.pickering@xxxxxxxxx <mailto:jason.p.pickering@xxxxxxxxx> >; dhis2-devs <dhis2-devs@xxxxxxxxxxxxxxxxxxx <mailto:dhis2-devs@xxxxxxxxxxxxxxxxxxx> >
Subject: Re: [Dhis2-devs] latest 2.28 build not working?
Hi Bernard
Your war file is damaged ie. it is not a proper zip file. Probably interrupted during download. You need to clear everything out of your webapps directory, download and deploy it again.
You can always test if your war file is "good" by running "unzip -t mywarfile.war"
This is your current problem. Having resolved this we may of course see new ones, but one step at a time.
Regards
Bob
On 1 August 2018 at 12:44, Bernard Sadaka (IM Advisor) <lib.ima@xxxxxxxxxx <mailto:lib.ima@xxxxxxxxxx> > wrote:
Dear Jason,
Please find attached the full logs for today.
I tried several times to load the old WAR file and then the new WAR file and did it multiple times.
Looking forward to your support.
Thank you in advance.
All the best,
Bernard
Bernard Sadaka
Information Management Advisor
Première Urgence - Aide Médicale Internationale
Nehmeh Building, Sanine Street, Chiyah, 3rd Floor
Ain el Remmaneh, Beirut, Lebanon
E-mail: <mailto:lib.ima@xxxxxxxxxx> lib.ima@xxxxxxxxxx
Cell: +961 71 004 881 (208)
Skype: imapuami
Website: <https://www.pu-ami.org/> https://www.pu-ami.org
From: Jason Pickering [mailto:jason.p.pickering@xxxxxxxxx <mailto:jason.p.pickering@xxxxxxxxx> ]
Sent: Wednesday, August 1, 2018 11:57 AM
To: lib.ima@xxxxxxxxxx <mailto:lib.ima@xxxxxxxxxx>
Cc: dhis2-devs <dhis2-devs@xxxxxxxxxxxxxxxxxxx <mailto:dhis2-devs@xxxxxxxxxxxxxxxxxxx> >
Subject: Re: [Dhis2-devs] latest 2.28 build not working?
Hi Bernard,
It looks to me like the application server does not have a connection to the database. Could you restart DHIS2, and post the entire log from the point of when you restart Tomcat?
Best regards,
Jason
On Wed, Aug 1, 2018 at 9:52 AM Bernard Sadaka (IM Advisor) <lib.ima@xxxxxxxxxx <mailto:lib.ima@xxxxxxxxxx> > wrote:
Dear Jason and All,
Any updates on this?
We would really like to update our 2.28 instance and possibly migrate to 2.30.
Looking forward to hearing from you.
All the best,
Bernard
Bernard Sadaka
Information Management Advisor
Première Urgence - Aide Médicale Internationale
Nehmeh Building, Sanine Street, Chiyah, 3rd Floor
Ain el Remmaneh, Beirut, Lebanon
E-mail: <mailto:lib.ima@xxxxxxxxxx> lib.ima@xxxxxxxxxx
Cell: +961 71 004 881 (208)
Skype: imapuami
Website: <https://www.pu-ami.org/> https://www.pu-ami.org
From: Bernard Sadaka (IM Advisor) [mailto:lib.ima@xxxxxxxxxx <mailto:lib.ima@xxxxxxxxxx> ]
Sent: Wednesday, July 4, 2018 09:45 AM
To: 'Jason Pickering' <jason.p.pickering@xxxxxxxxx <mailto:jason.p.pickering@xxxxxxxxx> >
Cc: 'dhis2-devs' <dhis2-devs@xxxxxxxxxxxxxxxxxxx <mailto:dhis2-devs@xxxxxxxxxxxxxxxxxxx> >
Subject: RE: [Dhis2-devs] latest 2.28 build not working?
Dear Jason,
Yes indeed got a few severe errors: (attached are the catalina files of June 21 and this morning too)
Appreciate your support.
//////////////21 June2018 SEVERE////////////////
SEVERE: The web application [] appears to have started a thread named [com.google.inject.internal.util.$Finalizer] but has failed to stop it. This is very likely to create a memory leak.
Jun 21, 2018 3:01:00 PM org.apache.catalina.loader.WebappClassLoaderBase clearReferencesThreads
SEVERE: The web application [] appears to have started a thread named [Batik CleanerThread] but has failed to stop it. This is very likely to create a memory leak.
Jun 21, 2018 3:01:00 PM org.apache.catalina.loader.WebappClassLoaderBase clearReferencesThreads
SEVERE: The web application [] appears to have started a thread named [ForkJoinPool.commonPool-worker-0] but has failed to stop it. This is very likely to create a memory leak.
Jun 21, 2018 3:01:00 PM org.apache.catalina.loader.WebappClassLoaderBase checkThreadLocalMapForLeaks
SEVERE: The web application [] created a ThreadLocal with key of type [java.lang.ThreadLocal] (value [java.lang.ThreadLocal@3f0f0f8c]) and a value of type [org.springframework.security.core.context.SecurityContextImpl] (value [org.springframework.security.core.context.SecurityContextImpl@ffffffff: Null authentication]) but failed to remove it when the web application was stopped. Threads are going to be renewed over time to try and avoid a probable memory leak.
Jun 21, 2018 3:01:00 PM org.apache.catalina.loader.WebappClassLoaderBase checkThreadLocalMapForLeaks
SEVERE: Unable to determine string representation of value of type [org.hisp.dhis.user.User]
org.hibernate.LazyInitializationException: failed to lazily initialize a collection of role: org.hisp.dhis.user.User.groups, could not initialize proxy - no Session
at org.hibernate.collection.internal.AbstractPersistentCollection.throwLazyInitializationException(AbstractPersistentCollection.java:582)
at org.hibernate.collection.internal.AbstractPersistentCollection.withTemporarySessionIfNeeded(AbstractPersistentCollection.java:201)
at org.hibernate.collection.internal.AbstractPersistentCollection.initialize(AbstractPersistentCollection.java:561)
at org.hibernate.collection.internal.AbstractPersistentCollection.read(AbstractPersistentCollection.java:132)
at org.hibernate.collection.internal.PersistentSet.toString(PersistentSet.java:299)
at java.lang.String.valueOf(String.java:2994)
at java.lang.StringBuilder.append(StringBuilder.java:131)
at org.hisp.dhis.user.User.toString(User.java:661)
at org.apache.catalina.loader.WebappClassLoaderBase.checkThreadLocalMapForLeaks(WebappClassLoaderBase.java:2734)
at org.apache.catalina.loader.WebappClassLoaderBase.checkThreadLocalsForLeaks(WebappClassLoaderBase.java:2668)
at org.apache.catalina.loader.WebappClassLoaderBase.clearReferences(WebappClassLoaderBase.java:2174)
at org.apache.catalina.loader.WebappClassLoaderBase.stop(WebappClassLoaderBase.java:2068)
at org.apache.catalina.loader.WebappLoader.stopInternal(WebappLoader.java:661)
at org.apache.catalina.util.LifecycleBase.stop(LifecycleBase.java:224)
at org.apache.catalina.core.StandardContext.stopInternal(StandardContext.java:5822)
at org.apache.catalina.util.LifecycleBase.stop(LifecycleBase.java:224)
at org.apache.catalina.core.ContainerBase$StopChild.call(ContainerBase.java:1588)
at org.apache.catalina.core.ContainerBase$StopChild.call(ContainerBase.java:1577)
at java.util.concurrent.FutureTask.run(FutureTask.java:266)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at java.lang.Thread.run(Thread.java:748)
Jun 21, 2018 3:01:00 PM org.apache.catalina.loader.WebappClassLoaderBase checkThreadLocalMapForLeaks
SEVERE: The web application [] created a ThreadLocal with key of type [java.lang.ThreadLocal] (value [java.lang.ThreadLocal@faababc]) and a value of type [org.hisp.dhis.user.User] (value [Unknown]) but failed to remove it when the web application was stopped. Threads are going to be renewed over time to try and avoid a probable memory leak.
Jun 21, 2018 3:01:00 PM org.apache.catalina.loader.WebappClassLoaderBase checkThreadLocalMapForLeaks
SEVERE: The web application [] created a ThreadLocal with key of type [com.google.inject.internal.InjectorImpl$1] (value [com.google.inject.internal.InjectorImpl$1@7d46e98]) and a value of type [java.lang.Object[]] (value [[Ljava.lang.Object;@40606281]) but failed to remove it when the web application was stopped. Threads are going to be renewed over time to try and avoid a probable memory leak.
Jun 21, 2018 3:01:00 PM org.apache.catalina.loader.WebappClassLoaderBase checkThreadLocalMapForLeaks
SEVERE: Unable to determine string representation of value of type [org.hisp.dhis.user.User]
org.hibernate.LazyInitializationException: failed to lazily initialize a collection of role: org.hisp.dhis.user.User.groups, could not initialize proxy - no Session
at org.hibernate.collection.internal.AbstractPersistentCollection.throwLazyInitializationException(AbstractPersistentCollection.java:582)
at org.hibernate.collection.internal.AbstractPersistentCollection.withTemporarySessionIfNeeded(AbstractPersistentCollection.java:201)
at org.hibernate.collection.internal.AbstractPersistentCollection.initialize(AbstractPersistentCollection.java:561)
at org.hibernate.collection.internal.AbstractPersistentCollection.read(AbstractPersistentCollection.java:132)
at org.hibernate.collection.internal.PersistentSet.toString(PersistentSet.java:299)
at java.lang.String.valueOf(String.java:2994)
at java.lang.StringBuilder.append(StringBuilder.java:131)
at org.hisp.dhis.user.User.toString(User.java:661)
at org.apache.catalina.loader.WebappClassLoaderBase.checkThreadLocalMapForLeaks(WebappClassLoaderBase.java:2734)
at org.apache.catalina.loader.WebappClassLoaderBase.checkThreadLocalsForLeaks(WebappClassLoaderBase.java:2668)
at org.apache.catalina.loader.WebappClassLoaderBase.clearReferences(WebappClassLoaderBase.java:2174)
at org.apache.catalina.loader.WebappClassLoaderBase.stop(WebappClassLoaderBase.java:2068)
at org.apache.catalina.loader.WebappLoader.stopInternal(WebappLoader.java:661)
at org.apache.catalina.util.LifecycleBase.stop(LifecycleBase.java:224)
at org.apache.catalina.core.StandardContext.stopInternal(StandardContext.java:5822)
at org.apache.catalina.util.LifecycleBase.stop(LifecycleBase.java:224)
at org.apache.catalina.core.ContainerBase$StopChild.call(ContainerBase.java:1588)
at org.apache.catalina.core.ContainerBase$StopChild.call(ContainerBase.java:1577)
at java.util.concurrent.FutureTask.run(FutureTask.java:266)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at java.lang.Thread.run(Thread.java:748)
Jun 21, 2018 3:01:00 PM org.apache.catalina.loader.WebappClassLoaderBase checkThreadLocalMapForLeaks
SEVERE: The web application [] created a ThreadLocal with key of type [java.lang.ThreadLocal] (value [java.lang.ThreadLocal@faababc]) and a value of type [org.hisp.dhis.user.User] (value [Unknown]) but failed to remove it when the web application was stopped. Threads are going to be renewed over time to try and avoid a probable memory leak.
Jun 21, 2018 3:01:00 PM org.apache.catalina.loader.WebappClassLoaderBase checkThreadLocalMapForLeaks
SEVERE: Unable to determine string representation of value of type [org.hisp.dhis.user.User]
org.hibernate.LazyInitializationException: failed to lazily initialize a collection of role: org.hisp.dhis.user.User.groups, could not initialize proxy - no Session
at org.hibernate.collection.internal.AbstractPersistentCollection.throwLazyInitializationException(AbstractPersistentCollection.java:582)
at org.hibernate.collection.internal.AbstractPersistentCollection.withTemporarySessionIfNeeded(AbstractPersistentCollection.java:201)
at org.hibernate.collection.internal.AbstractPersistentCollection.initialize(AbstractPersistentCollection.java:561)
at org.hibernate.collection.internal.AbstractPersistentCollection.read(AbstractPersistentCollection.java:132)
at org.hibernate.collection.internal.PersistentSet.toString(PersistentSet.java:299)
at java.lang.String.valueOf(String.java:2994)
at java.lang.StringBuilder.append(StringBuilder.java:131)
at org.hisp.dhis.user.User.toString(User.java:661)
at org.apache.catalina.loader.WebappClassLoaderBase.checkThreadLocalMapForLeaks(WebappClassLoaderBase.java:2734)
at org.apache.catalina.loader.WebappClassLoaderBase.checkThreadLocalsForLeaks(WebappClassLoaderBase.java:2668)
at org.apache.catalina.loader.WebappClassLoaderBase.clearReferences(WebappClassLoaderBase.java:2174)
at org.apache.catalina.loader.WebappClassLoaderBase.stop(WebappClassLoaderBase.java:2068)
at org.apache.catalina.loader.WebappLoader.stopInternal(WebappLoader.java:661)
at org.apache.catalina.util.LifecycleBase.stop(LifecycleBase.java:224)
at org.apache.catalina.core.StandardContext.stopInternal(StandardContext.java:5822)
at org.apache.catalina.util.LifecycleBase.stop(LifecycleBase.java:224)
at org.apache.catalina.core.ContainerBase$StopChild.call(ContainerBase.java:1588)
at org.apache.catalina.core.ContainerBase$StopChild.call(ContainerBase.java:1577)
at java.util.concurrent.FutureTask.run(FutureTask.java:266)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at java.lang.Thread.run(Thread.java:748)
Jun 21, 2018 3:01:00 PM org.apache.catalina.loader.WebappClassLoaderBase checkThreadLocalMapForLeaks
SEVERE: The web application [] created a ThreadLocal with key of type [java.lang.ThreadLocal] (value [java.lang.ThreadLocal@faababc]) and a value of type [org.hisp.dhis.user.User] (value [Unknown]) but failed to remove it when the web application was stopped. Threads are going to be renewed over time to try and avoid a probable memory leak.
Jun 21, 2018 3:01:00 PM org.apache.catalina.loader.WebappClassLoaderBase checkThreadLocalMapForLeaks
SEVERE: The web application [] created a ThreadLocal with key of type [com.google.inject.internal.InjectorImpl$1] (value [com.google.inject.internal.InjectorImpl$1@28933881]) and a value of type [java.lang.Object[]] (value [[Ljava.lang.Object;@6ba42378]) but failed to remove it when the web application was stopped. Threads are going to be renewed over time to try and avoid a probable memory leak.
Jun 21, 2018 3:01:00 PM org.apache.catalina.loader.WebappClassLoaderBase checkThreadLocalMapForLeaks
SEVERE: Unable to determine string representation of value of type [org.hisp.dhis.user.User]
org.hibernate.LazyInitializationException: failed to lazily initialize a collection of role: org.hisp.dhis.user.User.groups, could not initialize proxy - no Session
at org.hibernate.collection.internal.AbstractPersistentCollection.throwLazyInitializationException(AbstractPersistentCollection.java:582)
at org.hibernate.collection.internal.AbstractPersistentCollection.withTemporarySessionIfNeeded(AbstractPersistentCollection.java:201)
at org.hibernate.collection.internal.AbstractPersistentCollection.initialize(AbstractPersistentCollection.java:561)
at org.hibernate.collection.internal.AbstractPersistentCollection.read(AbstractPersistentCollection.java:132)
at org.hibernate.collection.internal.PersistentSet.toString(PersistentSet.java:299)
at java.lang.String.valueOf(String.java:2994)
at java.lang.StringBuilder.append(StringBuilder.java:131)
at org.hisp.dhis.user.User.toString(User.java:661)
at org.apache.catalina.loader.WebappClassLoaderBase.checkThreadLocalMapForLeaks(WebappClassLoaderBase.java:2734)
at org.apache.catalina.loader.WebappClassLoaderBase.checkThreadLocalsForLeaks(WebappClassLoaderBase.java:2668)
at org.apache.catalina.loader.WebappClassLoaderBase.clearReferences(WebappClassLoaderBase.java:2174)
at org.apache.catalina.loader.WebappClassLoaderBase.stop(WebappClassLoaderBase.java:2068)
at org.apache.catalina.loader.WebappLoader.stopInternal(WebappLoader.java:661)
at org.apache.catalina.util.LifecycleBase.stop(LifecycleBase.java:224)
at org.apache.catalina.core.StandardContext.stopInternal(StandardContext.java:5822)
at org.apache.catalina.util.LifecycleBase.stop(LifecycleBase.java:224)
at org.apache.catalina.core.ContainerBase$StopChild.call(ContainerBase.java:1588)
at org.apache.catalina.core.ContainerBase$StopChild.call(ContainerBase.java:1577)
at java.util.concurrent.FutureTask.run(FutureTask.java:266)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at java.lang.Thread.run(Thread.java:748)
Jun 21, 2018 3:01:00 PM org.apache.catalina.loader.WebappClassLoaderBase checkThreadLocalMapForLeaks
SEVERE: The web application [] created a ThreadLocal with key of type [java.lang.ThreadLocal] (value [java.lang.ThreadLocal@faababc]) and a value of type [org.hisp.dhis.user.User] (value [Unknown]) but failed to remove it when the web application was stopped. Threads are going to be renewed over time to try and avoid a probable memory leak.
Jun 21, 2018 3:01:00 PM org.apache.catalina.loader.WebappClassLoaderBase checkThreadLocalMapForLeaks
SEVERE: Unable to determine string representation of value of type [org.hisp.dhis.user.User]
org.hibernate.LazyInitializationException: failed to lazily initialize a collection of role: org.hisp.dhis.user.User.groups, could not initialize proxy - no Session
at org.hibernate.collection.internal.AbstractPersistentCollection.throwLazyInitializationException(AbstractPersistentCollection.java:582)
at org.hibernate.collection.internal.AbstractPersistentCollection.withTemporarySessionIfNeeded(AbstractPersistentCollection.java:201)
at org.hibernate.collection.internal.AbstractPersistentCollection.initialize(AbstractPersistentCollection.java:561)
at org.hibernate.collection.internal.AbstractPersistentCollection.read(AbstractPersistentCollection.java:132)
at org.hibernate.collection.internal.PersistentSet.toString(PersistentSet.java:299)
at java.lang.String.valueOf(String.java:2994)
at java.lang.StringBuilder.append(StringBuilder.java:131)
at org.hisp.dhis.user.User.toString(User.java:661)
at org.apache.catalina.loader.WebappClassLoaderBase.checkThreadLocalMapForLeaks(WebappClassLoaderBase.java:2734)
at org.apache.catalina.loader.WebappClassLoaderBase.checkThreadLocalsForLeaks(WebappClassLoaderBase.java:2668)
at org.apache.catalina.loader.WebappClassLoaderBase.clearReferences(WebappClassLoaderBase.java:2174)
at org.apache.catalina.loader.WebappClassLoaderBase.stop(WebappClassLoaderBase.java:2068)
at org.apache.catalina.loader.WebappLoader.stopInternal(WebappLoader.java:661)
at org.apache.catalina.util.LifecycleBase.stop(LifecycleBase.java:224)
at org.apache.catalina.core.StandardContext.stopInternal(StandardContext.java:5822)
at org.apache.catalina.util.LifecycleBase.stop(LifecycleBase.java:224)
at org.apache.catalina.core.ContainerBase$StopChild.call(ContainerBase.java:1588)
at org.apache.catalina.core.ContainerBase$StopChild.call(ContainerBase.java:1577)
at java.util.concurrent.FutureTask.run(FutureTask.java:266)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at java.lang.Thread.run(Thread.java:748)
Jun 21, 2018 3:01:00 PM org.apache.catalina.loader.WebappClassLoaderBase checkThreadLocalMapForLeaks
SEVERE: The web application [] created a ThreadLocal with key of type [java.lang.ThreadLocal] (value [java.lang.ThreadLocal@faababc]) and a value of type [org.hisp.dhis.user.User] (value [Unknown]) but failed to remove it when the web application was stopped. Threads are going to be renewed over time to try and avoid a probable memory leak.
Jun 21, 2018 3:01:00 PM org.apache.catalina.loader.WebappClassLoaderBase checkThreadLocalMapForLeaks
SEVERE: The web application [] created a ThreadLocal with key of type [com.google.inject.internal.InjectorImpl$1] (value [com.google.inject.internal.InjectorImpl$1@7d46e98]) and a value of type [java.lang.Object[]] (value [[Ljava.lang.Object;@5f5747c8]) but failed to remove it when the web application was stopped. Threads are going to be renewed over time to try and avoid a probable memory leak.
Jun 21, 2018 3:01:00 PM org.apache.catalina.loader.WebappClassLoaderBase checkThreadLocalMapForLeaks
SEVERE: Unable to determine string representation of value of type [org.hisp.dhis.user.User]
org.hibernate.LazyInitializationException: failed to lazily initialize a collection of role: org.hisp.dhis.user.User.groups, could not initialize proxy - no Session
at org.hibernate.collection.internal.AbstractPersistentCollection.throwLazyInitializationException(AbstractPersistentCollection.java:582)
at org.hibernate.collection.internal.AbstractPersistentCollection.withTemporarySessionIfNeeded(AbstractPersistentCollection.java:201)
at org.hibernate.collection.internal.AbstractPersistentCollection.initialize(AbstractPersistentCollection.java:561)
at org.hibernate.collection.internal.AbstractPersistentCollection.read(AbstractPersistentCollection.java:132)
at org.hibernate.collection.internal.PersistentSet.toString(PersistentSet.java:299)
at java.lang.String.valueOf(String.java:2994)
at java.lang.StringBuilder.append(StringBuilder.java:131)
at org.hisp.dhis.user.User.toString(User.java:661)
at org.apache.catalina.loader.WebappClassLoaderBase.checkThreadLocalMapForLeaks(WebappClassLoaderBase.java:2734)
at org.apache.catalina.loader.WebappClassLoaderBase.checkThreadLocalsForLeaks(WebappClassLoaderBase.java:2668)
at org.apache.catalina.loader.WebappClassLoaderBase.clearReferences(WebappClassLoaderBase.java:2174)
at org.apache.catalina.loader.WebappClassLoaderBase.stop(WebappClassLoaderBase.java:2068)
at org.apache.catalina.loader.WebappLoader.stopInternal(WebappLoader.java:661)
at org.apache.catalina.util.LifecycleBase.stop(LifecycleBase.java:224)
at org.apache.catalina.core.StandardContext.stopInternal(StandardContext.java:5822)
at org.apache.catalina.util.LifecycleBase.stop(LifecycleBase.java:224)
at org.apache.catalina.core.ContainerBase$StopChild.call(ContainerBase.java:1588)
at org.apache.catalina.core.ContainerBase$StopChild.call(ContainerBase.java:1577)
at java.util.concurrent.FutureTask.run(FutureTask.java:266)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at java.lang.Thread.run(Thread.java:748)
Jun 21, 2018 3:01:00 PM org.apache.catalina.loader.WebappClassLoaderBase checkThreadLocalMapForLeaks
SEVERE: The web application [] created a ThreadLocal with key of type [java.lang.ThreadLocal] (value [java.lang.ThreadLocal@faababc]) and a value of type [org.hisp.dhis.user.User] (value [Unknown]) but failed to remove it when the web application was stopped. Threads are going to be renewed over time to try and avoid a probable memory leak.
Jun 21, 2018 3:01:00 PM org.apache.catalina.loader.WebappClassLoaderBase checkThreadLocalMapForLeaks
SEVERE: Unable to determine string representation of value of type [org.hisp.dhis.user.User]
org.hibernate.LazyInitializationException: failed to lazily initialize a collection of role: org.hisp.dhis.user.User.groups, could not initialize proxy - no Session
at org.hibernate.collection.internal.AbstractPersistentCollection.throwLazyInitializationException(AbstractPersistentCollection.java:582)
at org.hibernate.collection.internal.AbstractPersistentCollection.withTemporarySessionIfNeeded(AbstractPersistentCollection.java:201)
at org.hibernate.collection.internal.AbstractPersistentCollection.initialize(AbstractPersistentCollection.java:561)
at org.hibernate.collection.internal.AbstractPersistentCollection.read(AbstractPersistentCollection.java:132)
at org.hibernate.collection.internal.PersistentSet.toString(PersistentSet.java:299)
at java.lang.String.valueOf(String.java:2994)
at java.lang.StringBuilder.append(StringBuilder.java:131)
at org.hisp.dhis.user.User.toString(User.java:661)
at org.apache.catalina.loader.WebappClassLoaderBase.checkThreadLocalMapForLeaks(WebappClassLoaderBase.java:2734)
at org.apache.catalina.loader.WebappClassLoaderBase.checkThreadLocalsForLeaks(WebappClassLoaderBase.java:2668)
at org.apache.catalina.loader.WebappClassLoaderBase.clearReferences(WebappClassLoaderBase.java:2174)
at org.apache.catalina.loader.WebappClassLoaderBase.stop(WebappClassLoaderBase.java:2068)
at org.apache.catalina.loader.WebappLoader.stopInternal(WebappLoader.java:661)
at org.apache.catalina.util.LifecycleBase.stop(LifecycleBase.java:224)
at org.apache.catalina.core.StandardContext.stopInternal(StandardContext.java:5822)
at org.apache.catalina.util.LifecycleBase.stop(LifecycleBase.java:224)
at org.apache.catalina.core.ContainerBase$StopChild.call(ContainerBase.java:1588)
at org.apache.catalina.core.ContainerBase$StopChild.call(ContainerBase.java:1577)
at java.util.concurrent.FutureTask.run(FutureTask.java:266)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at java.lang.Thread.run(Thread.java:748)
Jun 21, 2018 3:01:00 PM org.apache.catalina.loader.WebappClassLoaderBase checkThreadLocalMapForLeaks
SEVERE: The web application [] created a ThreadLocal with key of type [java.lang.ThreadLocal] (value [java.lang.ThreadLocal@faababc]) and a value of type [org.hisp.dhis.user.User] (value [Unknown]) but failed to remove it when the web application was stopped. Threads are going to be renewed over time to try and avoid a probable memory leak.
Jun 21, 2018 3:01:00 PM org.apache.catalina.loader.WebappClassLoaderBase checkThreadLocalMapForLeaks
SEVERE: Unable to determine string representation of value of type [org.hisp.dhis.user.User]
org.hibernate.LazyInitializationException: failed to lazily initialize a collection of role: org.hisp.dhis.user.User.groups, could not initialize proxy - no Session
at org.hibernate.collection.internal.AbstractPersistentCollection.throwLazyInitializationException(AbstractPersistentCollection.java:582)
at org.hibernate.collection.internal.AbstractPersistentCollection.withTemporarySessionIfNeeded(AbstractPersistentCollection.java:201)
at org.hibernate.collection.internal.AbstractPersistentCollection.initialize(AbstractPersistentCollection.java:561)
at org.hibernate.collection.internal.AbstractPersistentCollection.read(AbstractPersistentCollection.java:132)
at org.hibernate.collection.internal.PersistentSet.toString(PersistentSet.java:299)
at java.lang.String.valueOf(String.java:2994)
at java.lang.StringBuilder.append(StringBuilder.java:131)
at org.hisp.dhis.user.User.toString(User.java:661)
at org.apache.catalina.loader.WebappClassLoaderBase.checkThreadLocalMapForLeaks(WebappClassLoaderBase.java:2734)
at org.apache.catalina.loader.WebappClassLoaderBase.checkThreadLocalsForLeaks(WebappClassLoaderBase.java:2668)
at org.apache.catalina.loader.WebappClassLoaderBase.clearReferences(WebappClassLoaderBase.java:2174)
at org.apache.catalina.loader.WebappClassLoaderBase.stop(WebappClassLoaderBase.java:2068)
at org.apache.catalina.loader.WebappLoader.stopInternal(WebappLoader.java:661)
at org.apache.catalina.util.LifecycleBase.stop(LifecycleBase.java:224)
at org.apache.catalina.core.StandardContext.stopInternal(StandardContext.java:5822)
at org.apache.catalina.util.LifecycleBase.stop(LifecycleBase.java:224)
at org.apache.catalina.core.ContainerBase$StopChild.call(ContainerBase.java:1588)
at org.apache.catalina.core.ContainerBase$StopChild.call(ContainerBase.java:1577)
at java.util.concurrent.FutureTask.run(FutureTask.java:266)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at java.lang.Thread.run(Thread.java:748)
Jun 21, 2018 3:01:00 PM org.apache.catalina.loader.WebappClassLoaderBase checkThreadLocalMapForLeaks
SEVERE: The web application [] created a ThreadLocal with key of type [java.lang.ThreadLocal] (value [java.lang.ThreadLocal@faababc]) and a value of type [org.hisp.dhis.user.User] (value [Unknown]) but failed to remove it when the web application was stopped. Threads are going to be renewed over time to try and avoid a probable memory leak.
Jun 21, 2018 3:01:00 PM org.apache.catalina.loader.WebappClassLoaderBase checkThreadLocalMapForLeaks
SEVERE: Unable to determine string representation of value of type [org.hisp.dhis.user.User]
org.hibernate.LazyInitializationException: failed to lazily initialize a collection of role: org.hisp.dhis.user.User.groups, could not initialize proxy - no Session
at org.hibernate.collection.internal.AbstractPersistentCollection.throwLazyInitializationException(AbstractPersistentCollection.java:582)
at org.hibernate.collection.internal.AbstractPersistentCollection.withTemporarySessionIfNeeded(AbstractPersistentCollection.java:201)
at org.hibernate.collection.internal.AbstractPersistentCollection.initialize(AbstractPersistentCollection.java:561)
at org.hibernate.collection.internal.AbstractPersistentCollection.read(AbstractPersistentCollection.java:132)
at org.hibernate.collection.internal.PersistentSet.toString(PersistentSet.java:299)
at java.lang.String.valueOf(String.java:2994)
at java.lang.StringBuilder.append(StringBuilder.java:131)
at org.hisp.dhis.user.User.toString(User.java:661)
at org.apache.catalina.loader.WebappClassLoaderBase.checkThreadLocalMapForLeaks(WebappClassLoaderBase.java:2734)
at org.apache.catalina.loader.WebappClassLoaderBase.checkThreadLocalsForLeaks(WebappClassLoaderBase.java:2668)
at org.apache.catalina.loader.WebappClassLoaderBase.clearReferences(WebappClassLoaderBase.java:2174)
at org.apache.catalina.loader.WebappClassLoaderBase.stop(WebappClassLoaderBase.java:2068)
at org.apache.catalina.loader.WebappLoader.stopInternal(WebappLoader.java:661)
at org.apache.catalina.util.LifecycleBase.stop(LifecycleBase.java:224)
at org.apache.catalina.core.StandardContext.stopInternal(StandardContext.java:5822)
at org.apache.catalina.util.LifecycleBase.stop(LifecycleBase.java:224)
at org.apache.catalina.core.ContainerBase$StopChild.call(ContainerBase.java:1588)
at org.apache.catalina.core.ContainerBase$StopChild.call(ContainerBase.java:1577)
at java.util.concurrent.FutureTask.run(FutureTask.java:266)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at java.lang.Thread.run(Thread.java:748)
Jun 21, 2018 3:01:00 PM org.apache.catalina.loader.WebappClassLoaderBase checkThreadLocalMapForLeaks
SEVERE: The web application [] created a ThreadLocal with key of type [java.lang.ThreadLocal] (value [java.lang.ThreadLocal@faababc]) and a value of type [org.hisp.dhis.user.User] (value [Unknown]) but failed to remove it when the web application was stopped. Threads are going to be renewed over time to try and avoid a probable memory leak.
Jun 21, 2018 3:01:00 PM org.apache.catalina.loader.WebappClassLoaderBase checkThreadLocalMapForLeaks
SEVERE: Unable to determine string representation of value of type [org.hisp.dhis.user.User]
org.hibernate.LazyInitializationException: failed to lazily initialize a collection of role: org.hisp.dhis.user.User.groups, could not initialize proxy - no Session
at org.hibernate.collection.internal.AbstractPersistentCollection.throwLazyInitializationException(AbstractPersistentCollection.java:582)
at org.hibernate.collection.internal.AbstractPersistentCollection.withTemporarySessionIfNeeded(AbstractPersistentCollection.java:201)
at org.hibernate.collection.internal.AbstractPersistentCollection.initialize(AbstractPersistentCollection.java:561)
at org.hibernate.collection.internal.AbstractPersistentCollection.read(AbstractPersistentCollection.java:132)
at org.hibernate.collection.internal.PersistentSet.toString(PersistentSet.java:299)
at java.lang.String.valueOf(String.java:2994)
at java.lang.StringBuilder.append(StringBuilder.java:131)
at org.hisp.dhis.user.User.toString(User.java:661)
at org.apache.catalina.loader.WebappClassLoaderBase.checkThreadLocalMapForLeaks(WebappClassLoaderBase.java:2734)
at org.apache.catalina.loader.WebappClassLoaderBase.checkThreadLocalsForLeaks(WebappClassLoaderBase.java:2668)
at org.apache.catalina.loader.WebappClassLoaderBase.clearReferences(WebappClassLoaderBase.java:2174)
at org.apache.catalina.loader.WebappClassLoaderBase.stop(WebappClassLoaderBase.java:2068)
at org.apache.catalina.loader.WebappLoader.stopInternal(WebappLoader.java:661)
at org.apache.catalina.util.LifecycleBase.stop(LifecycleBase.java:224)
at org.apache.catalina.core.StandardContext.stopInternal(StandardContext.java:5822)
at org.apache.catalina.util.LifecycleBase.stop(LifecycleBase.java:224)
at org.apache.catalina.core.ContainerBase$StopChild.call(ContainerBase.java:1588)
at org.apache.catalina.core.ContainerBase$StopChild.call(ContainerBase.java:1577)
at java.util.concurrent.FutureTask.run(FutureTask.java:266)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at java.lang.Thread.run(Thread.java:748)
Jun 21, 2018 3:01:00 PM org.apache.catalina.loader.WebappClassLoaderBase checkThreadLocalMapForLeaks
SEVERE: The web application [] created a ThreadLocal with key of type [java.lang.ThreadLocal] (value [java.lang.ThreadLocal@faababc]) and a value of type [org.hisp.dhis.user.User] (value [Unknown]) but failed to remove it when the web application was stopped. Threads are going to be renewed over time to try and avoid a probable memory leak.
///////////////////////////////////////////////////
//////////////////04Jul2018 SEVERE/////////////////////
SEVERE: One or more listeners failed to start. Full details will be found in the appropriate container log file
Jul 04, 2018 9:13:10 AM org.apache.catalina.core.StandardContext startInternal
SEVERE: Context [] startup failed due to previous errors
Jul 04, 2018 9:13:11 AM org.apache.catalina.loader.WebappClassLoaderBase clearReferencesThreads
SEVERE: The web application [] appears to have started a thread named [com.google.inject.internal.util.$Finalizer] but has failed to stop it. This is very likely to create a memory leak.
Jul 04, 2018 9:13:11 AM org.apache.catalina.loader.WebappClassLoaderBase checkThreadLocalMapForLeaks
SEVERE: The web application [] created a ThreadLocal with key of type [com.google.inject.internal.InjectorImpl$1] (value [com.google.inject.internal.InjectorImpl$1@dd1242b]) and a value of type [java.lang.Object[]] (value [[Ljava.lang.Object;@49e97e84]) but failed to remove it when the web application was stopped. Threads are going to be renewed over time to try and avoid a probable memory leak.
Jul 04, 2018 9:13:11 AM org.apache.catalina.loader.WebappClassLoaderBase checkThreadLocalMapForLeaks
SEVERE: The web application [] created a ThreadLocal with key of type [java.lang.ThreadLocal] (value [java.lang.ThreadLocal@65f6dd45]) and a value of type [org.hibernate.boot.internal.MetadataImpl] (value [org.hibernate.boot.internal.MetadataImpl@6b671594]) but failed to remove it when the web application was stopped. Threads are going to be renewed over time to try and avoid a probable memory leak.
Jul 04, 2018 9:13:11 AM org.apache.catalina.loader.WebappClassLoaderBase checkThreadLocalMapForLeaks
SEVERE: The web application [] created a ThreadLocal with key of type [java.lang.ThreadLocal] (value [java.lang.ThreadLocal@6f9394af]) and a value of type [org.springframework.security.core.context.SecurityContextImpl] (value [org.springframework.security.core.context.SecurityContextImpl@ffffffff: Null authentication]) but failed to remove it when the web application was stopped. Threads are going to be renewed over time to try and avoid a probable memory leak.
Jul 04, 2018 9:13:11 AM org.apache.catalina.loader.WebappClassLoaderBase checkThreadLocalMapForLeaks
SEVERE: The web application [] created a ThreadLocal with key of type [com.google.inject.internal.InjectorImpl$1] (value [com.google.inject.internal.InjectorImpl$1@6d8cda87]) and a value of type [java.lang.Object[]] (value [[Ljava.lang.Object;@3ec33e86]) but failed to remove it when the web application was stopped. Threads are going to be renewed over time to try and avoid a probable memory leak.
Jul 04, 2018 9:13:11 AM org.apache.catalina.startup.HostConfig deployWAR
//////////////////////////////////////////////////////////
Thank you in advance for your help.
All the best,
Bernard
Bernard Sadaka
Information Management Advisor
Première Urgence - Aide Médicale Internationale
Nehmeh Building, Sanine Street, Chiyah, 3rd Floor
Ain el Remmaneh, Beirut, Lebanon
E-mail: <mailto:lib.ima@xxxxxxxxxx> lib.ima@xxxxxxxxxx
Cell: +961 71 004 881 (208)
Skype: imapuami
Website: <https://www.pu-ami.org/> https://www.pu-ami.org
From: Jason Pickering [mailto:jason.p.pickering@xxxxxxxxx]
Sent: Thursday, June 21, 2018 05:23 PM
To: lib.ima@xxxxxxxxxx <mailto:lib.ima@xxxxxxxxxx>
Cc: dhis2-devs <dhis2-devs@xxxxxxxxxxxxxxxxxxx <mailto:dhis2-devs@xxxxxxxxxxxxxxxxxxx> >
Subject: Re: [Dhis2-devs] latest 2.28 build not working?
Hi Bernard,
Could you provide more details? Did you get an error in the server logs?
Regards,
Jason
On Thu, Jun 21, 2018 at 2:30 PM Bernard Sadaka (IM Advisor) <lib.ima@xxxxxxxxxx <mailto:lib.ima@xxxxxxxxxx> > wrote:
Dear Developpers,
Today, 30 minutes ago (noon UTC), I tried to deploy the latest 2.28 .war ( available at:
--
Jason P. Pickering
email: jason.p.pickering@xxxxxxxxx <mailto:jason.p.pickering@xxxxxxxxx>
tel:+46764147049
_______________________________________________
Mailing list: https://launchpad.net/~dhis2-devs
Post to : dhis2-devs@xxxxxxxxxxxxxxxxxxx <mailto:dhis2-devs@xxxxxxxxxxxxxxxxxxx>
Unsubscribe : https://launchpad.net/~dhis2-devs
More help : https://help.launchpad.net/ListHelp
References
-
latest 2.28 build not working?
From: Bernard Sadaka (IM Advisor), 2018-06-21
-
Re: latest 2.28 build not working?
From: Jason Pickering, 2018-06-21
-
Re: latest 2.28 build not working?
From: Bernard Sadaka (IM Advisor), 2018-08-01
-
Re: latest 2.28 build not working?
From: Jason Pickering, 2018-08-01
-
Re: latest 2.28 build not working?
From: Bernard Sadaka (IM Advisor), 2018-08-01
-
Re: latest 2.28 build not working?
From: Bob Jolliffe, 2018-08-01
-
Re: latest 2.28 build not working?
From: Bernard Sadaka (IM Advisor), 2018-08-01
-
Re: latest 2.28 build not working?
From: Bob Jolliffe, 2018-08-01
-
Re: latest 2.28 build not working?
From: Bernard Sadaka (IM Advisor), 2018-08-01
-
Re: latest 2.28 build not working?
From: Bob Jolliffe, 2018-08-01
