dhis2-users team mailing list archive

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Re: [Dhis2-devs] Connection error

To: Knut Staring <knutst@xxxxxxxxx>
From: Bob Jolliffe <bobjolliffe@xxxxxxxxx>
Date: Tue, 12 Mar 2013 12:35:48 +0000
Cc: dhis2-users@xxxxxxxxxxxxxxxxxxx, DHIS 2 developers <dhis2-devs@xxxxxxxxxxxxxxxxxxx>, fatemacse@xxxxxxxxx
In-reply-to: <CAL=8=Ngo0C81qMdF69t1GHA83CCqTPZML-L9O1p7pVxLfVegWA@mail.gmail.com>
Hi Fatima

Looks like Knut and Morten might both be right.  It seems you are trying
(in your server.xml) to open an AJP connector on port 8009 and something
else is already using that port - possibly another tomcat.  Comment the
line out of your server.xml config file which refers to the ajp connector
and it will get rid of some of the errors.  I see you have an http
connector listening on port 8085 which seems to have come up fine.
 Typically you don't need both, so comment out the ajp one.

And follow Morten's advice to clean out the webapps directory before
deployiong the new war file.

Bob


On 12 March 2013 12:07, Knut Staring <knutst@xxxxxxxxx> wrote:

> Hi Fatima,
>
> My guess is that the previous tomcat process is still running. You could
> try to kill all java processes before attempting a new restart.
>
> For example:
>
> ps aux | grep java
> Dear All,
>
> Hey i am using dhis2 version 2.9 few months.
>
> Recently , i checkout the dhis2 version 2.9 source code and build it and
> keep the war file inside tomcat->webapps.
> when i am running the tomcat i got a error "Failed to initialize connector
> [Connector[AJP/1.3-8009]", "SEVERE: Error listenerStart",
> "SEVERE: Context [/dhis] startup failed due to previous errors"
>
> Details error are given bellow. Please help
>
> Mar 11, 2013 4:36:45 PM org.apache.catalina.core.AprLifecycleListener init
> INFO: An older version 1.1.20 of the APR based Apache Tomcat Native
> library is i
> nstalled, while Tomcat recommends a minimum version of 1.1.22
> Mar 11, 2013 4:36:45 PM org.apache.catalina.core.AprLifecycleListener init
> INFO: Loaded APR based Apache Tomcat Native library 1.1.20.
> Mar 11, 2013 4:36:45 PM org.apache.catalina.core.AprLifecycleListener init
> INFO: APR capabilities: IPv6 [true], sendfile [true], accept filters
> [false], ra
> ndom [true].
> Mar 11, 2013 4:36:46 PM org.apache.coyote.AbstractProtocol init
> INFO: Initializing ProtocolHandler ["http-apr-8085"]
> Mar 11, 2013 4:36:46 PM org.apache.coyote.AbstractProtocol init
> INFO: Initializing ProtocolHandler ["ajp-apr-8009"]
> Mar 11, 2013 4:36:46 PM org.apache.coyote.AbstractProtocol init
> SEVERE: Failed to initialize end point associated with ProtocolHandler
> ["ajp-apr
> -8009"]
> java.lang.Exception: Socket bind failed: [730048] Only one usage of each
> socket
> address (protocol/network address/port) is normally permitted.
>         at
> org.apache.tomcat.util.net.AprEndpoint.bind(AprEndpoint.java:423)
>         at
> org.apache.tomcat.util.net.AbstractEndpoint.init(AbstractEndpoint.jav
> a:566)
>         at
> org.apache.coyote.AbstractProtocol.init(AbstractProtocol.java:417)
>         at
> org.apache.catalina.connector.Connector.initInternal(Connector.java:9
> 56)
>         at
> org.apache.catalina.util.LifecycleBase.init(LifecycleBase.java:102)
>         at
> org.apache.catalina.core.StandardService.initInternal(StandardService
> .java:559)
>         at
> org.apache.catalina.util.LifecycleBase.init(LifecycleBase.java:102)
>         at
> org.apache.catalina.core.StandardServer.initInternal(StandardServer.j
> ava:814)
>         at
> org.apache.catalina.util.LifecycleBase.init(LifecycleBase.java:102)
>         at org.apache.catalina.startup.Catalina.load(Catalina.java:624)
>         at org.apache.catalina.startup.Catalina.load(Catalina.java:649)
>         at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
>         at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source)
>         at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
>         at java.lang.reflect.Method.invoke(Unknown Source)
>         at org.apache.catalina.startup.Bootstrap.load(Bootstrap.java:281)
>         at org.apache.catalina.startup.Bootstrap.main(Bootstrap.java:449)
>
> Mar 11, 2013 4:36:46 PM org.apache.catalina.core.StandardService
> initInternal
> SEVERE: Failed to initialize connector [Connector[AJP/1.3-8009]]
> org.apache.catalina.LifecycleException: Failed to initialize component
> [Connecto
> r[AJP/1.3-8009]]
>         at
> org.apache.catalina.util.LifecycleBase.init(LifecycleBase.java:106)
>         at
> org.apache.catalina.core.StandardService.initInternal(StandardService
> .java:559)
>         at
> org.apache.catalina.util.LifecycleBase.init(LifecycleBase.java:102)
>         at
> org.apache.catalina.core.StandardServer.initInternal(StandardServer.j
> ava:814)
>         at
> org.apache.catalina.util.LifecycleBase.init(LifecycleBase.java:102)
>         at org.apache.catalina.startup.Catalina.load(Catalina.java:624)
>         at org.apache.catalina.startup.Catalina.load(Catalina.java:649)
>         at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
>         at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source)
>         at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
>         at java.lang.reflect.Method.invoke(Unknown Source)
>         at org.apache.catalina.startup.Bootstrap.load(Bootstrap.java:281)
>         at org.apache.catalina.startup.Bootstrap.main(Bootstrap.java:449)
> Caused by: org.apache.catalina.LifecycleException: Protocol handler
> initializati
> on failed
>         at
> org.apache.catalina.connector.Connector.initInternal(Connector.java:9
> 58)
>         at
> org.apache.catalina.util.LifecycleBase.init(LifecycleBase.java:102)
>         ... 12 more
> Caused by: java.lang.Exception: Socket bind failed: [730048] Only one
> usage of e
> ach socket address (protocol/network address/port) is normally permitted.
>         at
> org.apache.tomcat.util.net.AprEndpoint.bind(AprEndpoint.java:423)
>         at
> org.apache.tomcat.util.net.AbstractEndpoint.init(AbstractEndpoint.jav
> a:566)
>         at
> org.apache.coyote.AbstractProtocol.init(AbstractProtocol.java:417)
>         at
> org.apache.catalina.connector.Connector.initInternal(Connector.java:9
> 56)
>         ... 13 more
>
> Mar 11, 2013 4:36:46 PM org.apache.catalina.startup.Catalina load
> INFO: Initialization processed in 1415 ms
> Mar 11, 2013 4:36:46 PM org.apache.catalina.core.StandardService
> startInternal
> INFO: Starting service Catalina
> Mar 11, 2013 4:36:46 PM org.apache.catalina.core.StandardEngine
> startInternal
> INFO: Starting Servlet Engine: Apache Tomcat/7.0.27
> Mar 11, 2013 4:36:46 PM org.apache.catalina.startup.HostConfig deployWAR
> INFO: Deploying web application archive C:\tomcat-7.0.27\webapps\birt.war
> Mar 11, 2013 4:36:46 PM org.apache.catalina.startup.TaglibUriRule body
> INFO: TLD skipped. URI: http://www.eclipse.org/birt/taglibs/birt.tld is
> already
> defined
> Mar 11, 2013 4:36:48 PM org.apache.catalina.startup.HostConfig deployWAR
> INFO: Deploying web application archive C:\tomcat-7.0.27\webapps\dhis.war
> Mar 11, 2013 4:36:52 PM org.apache.catalina.loader.WebappClassLoader
> validateJar
> File
> INFO:
> validateJarFile(C:\tomcat-7.0.27\webapps\dhis\WEB-INF\lib\geronimo-servlet
> _2.5_spec-1.1.2.jar) - jar not loaded. See Servlet Spec 2.3, section
> 9.7.2. Offe
> nding class: javax/servlet/Servlet.class
> * ERROR 2013-03-11 16:37:09,593 Context initialization failed
> (ContextLoader.jav
> a [pool-2-thread-1])
> org.springframework.beans.factory.BeanCreationException: Error creating
> bean wit
> h name 'org.hisp.dhis.dxf2.metadata.ExportService': Injection of autowired
> depen
> dencies failed; nested exception is
> org.springframework.beans.factory.BeanCreati
> onException: Could not autowire field: protected
> org.hisp.dhis.common.Identifiab
> leObjectManager org.hisp.dhis.dxf2.metadata.DefaultExportService.manager;
> nested
>  exception is
> org.springframework.beans.factory.CannotLoadBeanClassException: Er
> ror loading class
> [org.hisp.dhis.dataverify.hibernate.HibernateDataVerificationS
> tore] for bean with name 'org.hisp.dhis.dataverify.DataVerificationStore'
> define
> d in URL
> [jar:file:/C:/tomcat-7.0.27/webapps/dhis/WEB-INF/lib/dhis-in-service-re
> ports-2.9.jar!/META-INF/dhis/beans.xml]: problem with class file or
> dependent cl
> ass; nested exception is java.lang.NoClassDefFoundError:
> org/hisp/dhis/dataverif
> y/DataVerificationStore
>         at
> org.springframework.beans.factory.annotation.AutowiredAnnotationBeanP
>
> ostProcessor.postProcessPropertyValues(AutowiredAnnotationBeanPostProcessor.java
> :287)
>         at
> org.springframework.beans.factory.support.AbstractAutowireCapableBean
> Factory.populateBean(AbstractAutowireCapableBeanFactory.java:1106)
>         at
> org.springframework.beans.factory.support.AbstractAutowireCapableBean
> Factory.doCreateBean(AbstractAutowireCapableBeanFactory.java:517)
>         at
> org.springframework.beans.factory.support.AbstractAutowireCapableBean
> Factory.createBean(AbstractAutowireCapableBeanFactory.java:456)
>         at
> org.springframework.beans.factory.support.AbstractBeanFactory$1.getOb
> ject(AbstractBeanFactory.java:294)
>         at
> org.springframework.beans.factory.support.DefaultSingletonBeanRegistr
> y.getSingleton(DefaultSingletonBeanRegistry.java:225)
>         at
> org.springframework.beans.factory.support.AbstractBeanFactory.doGetBe
> an(AbstractBeanFactory.java:291)
>         at
> org.springframework.beans.factory.support.AbstractBeanFactory.getBean
> (AbstractBeanFactory.java:193)
>         at
> org.springframework.beans.factory.support.DefaultListableBeanFactory.
> preInstantiateSingletons(DefaultListableBeanFactory.java:585)
>         at
> org.springframework.context.support.AbstractApplicationContext.finish
> BeanFactoryInitialization(AbstractApplicationContext.java:913)
>         at
> org.springframework.context.support.AbstractApplicationContext.refres
> h(AbstractApplicationContext.java:464)
>         at
> org.springframework.web.context.ContextLoader.configureAndRefreshWebA
> pplicationContext(ContextLoader.java:385)
>         at
> org.springframework.web.context.ContextLoader.initWebApplicationConte
> xt(ContextLoader.java:284)
>         at
> org.springframework.web.context.ContextLoaderListener.contextInitiali
> zed(ContextLoaderListener.java:111)
>         at
> org.apache.catalina.core.StandardContext.listenerStart(StandardContex
> t.java:4779)
>         at
> org.apache.catalina.core.StandardContext.startInternal(StandardContex
> t.java:5273)
>         at
> org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:150)
>         at
> org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase
> .java:895)
>         at
> org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:87
> 1)
>         at
> org.apache.catalina.core.StandardHost.addChild(StandardHost.java:615)
>
>         at
> org.apache.catalina.startup.HostConfig.deployWAR(HostConfig.java:962)
>
>         at
> org.apache.catalina.startup.HostConfig$DeployWar.run(HostConfig.java:
> 1603)
>         at java.util.concurrent.Executors$RunnableAdapter.call(Unknown
> Source)
>         at java.util.concurrent.FutureTask$Sync.innerRun(Unknown Source)
>         at java.util.concurrent.FutureTask.run(Unknown Source)
>         at java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown
> Source)
>         at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown
> Source)
>         at java.lang.Thread.run(Unknown Source)
> Caused by: org.springframework.beans.factory.BeanCreationException: Could
> not au
> towire field: protected org.hisp.dhis.common.IdentifiableObjectManager
> org.hisp.
> dhis.dxf2.metadata.DefaultExportService.manager; nested exception is
> org.springf
> ramework.beans.factory.CannotLoadBeanClassException: Error loading class
> [org.hi
> sp.dhis.dataverify.hibernate.HibernateDataVerificationStore] for bean with
> name
> 'org.hisp.dhis.dataverify.DataVerificationStore' defined in URL
> [jar:file:/C:/to
>
> mcat-7.0.27/webapps/dhis/WEB-INF/lib/dhis-in-service-reports-2.9.jar!/META-INF/d
> his/beans.xml]: problem with class file or dependent class; nested
> exception is
> java.lang.NoClassDefFoundError:
> org/hisp/dhis/dataverify/DataVerificationStore
>         at
> org.springframework.beans.factory.annotation.AutowiredAnnotationBeanP
>
> ostProcessor$AutowiredFieldElement.inject(AutowiredAnnotationBeanPostProcessor.j
> ava:506)
>         at
> org.springframework.beans.factory.annotation.InjectionMetadata.inject
> (InjectionMetadata.java:87)
>         at
> org.springframework.beans.factory.annotation.AutowiredAnnotationBeanP
>
> ostProcessor.postProcessPropertyValues(AutowiredAnnotationBeanPostProcessor.java
> :284)
>         ... 27 more
> Caused by: org.springframework.beans.factory.CannotLoadBeanClassException:
> Error
>  loading class
> [org.hisp.dhis.dataverify.hibernate.HibernateDataVerificationStor
> e] for bean with name 'org.hisp.dhis.dataverify.DataVerificationStore'
> defined i
> n URL
> [jar:file:/C:/tomcat-7.0.27/webapps/dhis/WEB-INF/lib/dhis-in-service-repor
> ts-2.9.jar!/META-INF/dhis/beans.xml]: problem with class file or dependent
> class
> ; nested exception is java.lang.NoClassDefFoundError:
> org/hisp/dhis/dataverify/D
> ataVerificationStore
>         at
> org.springframework.beans.factory.support.AbstractBeanFactory.resolve
> BeanClass(AbstractBeanFactory.java:1265)
>         at
> org.springframework.beans.factory.support.AbstractAutowireCapableBean
> Factory.predictBeanType(AbstractAutowireCapableBeanFactory.java:576)
>         at
> org.springframework.beans.factory.support.AbstractBeanFactory.isFacto
> ryBean(AbstractBeanFactory.java:1331)
>         at
> org.springframework.beans.factory.support.DefaultListableBeanFactory.
> getBeanNamesForType(DefaultListableBeanFactory.java:317)
>         at
> org.springframework.beans.factory.BeanFactoryUtils.beanNamesForTypeIn
> cludingAncestors(BeanFactoryUtils.java:185)
>         at
> org.springframework.beans.factory.support.DefaultListableBeanFactory.
> findAutowireCandidates(DefaultListableBeanFactory.java:833)
>         at
> org.springframework.beans.factory.support.DefaultListableBeanFactory.
> doResolveDependency(DefaultListableBeanFactory.java:790)
>         at
> org.springframework.beans.factory.support.DefaultListableBeanFactory.
> resolveDependency(DefaultListableBeanFactory.java:707)
>         at
> org.springframework.beans.factory.annotation.AutowiredAnnotationBeanP
>
> ostProcessor$AutowiredFieldElement.inject(AutowiredAnnotationBeanPostProcessor.j
> ava:478)
>         ... 29 more
> Caused by: java.lang.NoClassDefFoundError:
> org/hisp/dhis/dataverify/DataVerifica
> tionStore
>         at java.lang.ClassLoader.defineClass1(Native Method)
>         at java.lang.ClassLoader.defineClass(Unknown Source)
>         at java.security.SecureClassLoader.defineClass(Unknown Source)
>         at
> org.apache.catalina.loader.WebappClassLoader.findClassInternal(Webapp
> ClassLoader.java:2889)
>         at
> org.apache.catalina.loader.WebappClassLoader.findClass(WebappClassLoa
> der.java:1170)
>         at
> org.apache.catalina.loader.WebappClassLoader.loadClass(WebappClassLoa
> der.java:1678)
>         at
> org.apache.catalina.loader.WebappClassLoader.loadClass(WebappClassLoa
> der.java:1556)
>         at org.springframework.util.ClassUtils.forName(ClassUtils.java:258)
>         at
> org.springframework.beans.factory.support.AbstractBeanDefinition.reso
> lveBeanClass(AbstractBeanDefinition.java:417)
>         at
> org.springframework.beans.factory.support.AbstractBeanFactory.doResol
> veBeanClass(AbstractBeanFactory.java:1283)
>         at
> org.springframework.beans.factory.support.AbstractBeanFactory.resolve
> BeanClass(AbstractBeanFactory.java:1254)
>         ... 37 more
> Caused by: java.lang.ClassNotFoundException:
> org.hisp.dhis.dataverify.DataVerifi
> cationStore
>         at
> org.apache.catalina.loader.WebappClassLoader.loadClass(WebappClassLoa
> der.java:1711)
>         at
> org.apache.catalina.loader.WebappClassLoader.loadClass(WebappClassLoa
> der.java:1556)
>         ... 48 more
> Mar 11, 2013 4:37:09 PM org.apache.catalina.core.StandardContext
> startInternal
> SEVERE: Error listenerStart
> Mar 11, 2013 4:37:09 PM org.apache.catalina.core.StandardContext
> startInternal
> SEVERE: Context [/dhis] startup failed due to previous errors
> * INFO  2013-03-11 16:37:09,609 De-registering jdbc driver:
> sun.jdbc.odbc.JdbcOd
> bcDriver@1513d1e (StartupListener.java [pool-2-thread-1])
> Mar 11, 2013 4:37:09 PM org.apache.catalina.loader.WebappClassLoader
> checkThread
> LocalMapForLeaks
> SEVERE: The web application [/dhis] created a ThreadLocal with key of type
> [com.
> sun.xml.bind.v2.ClassFactory$1] (value
> [com.sun.xml.bind.v2.ClassFactory$1@737bf
> e]) and a value of type [java.util.WeakHashMap] (value [{class
> java.util.ArrayLi
> st=java.lang.ref.WeakReference@1d162fa, class
> javax.xml.bind.annotation.adapters
> .CollapsedStringAdapter=java.lang.ref.WeakReference@1b928bd, class
> org.apache.ca
> mel.model.PackageScanDefinition=java.lang.ref.WeakReference@121c26a,
> class org.a
>
> pache.camel.spring.CamelProducerTemplateFactoryBean=java.lang.ref.WeakReference@
> 162df94, class
> org.apache.camel.spring.CamelContextFactoryBean=java.lang.ref.Wea
> kReference@449d72}]) but failed to remove it when the web application was
> stoppe
> d. Threads are going to be renewed over time to try and avoid a probable
> memory
> leak.
> Mar 11, 2013 4:37:09 PM org.apache.catalina.startup.HostConfig
> deployDirectory
> INFO: Deploying web application directory C:\tomcat-7.0.27\webapps\docs
> Mar 11, 2013 4:37:10 PM org.apache.catalina.startup.HostConfig
> deployDirectory
> INFO: Deploying web application directory C:\tomcat-7.0.27\webapps\examples
> Mar 11, 2013 4:37:12 PM org.apache.catalina.startup.HostConfig
> deployDirectory
> INFO: Deploying web application directory
> C:\tomcat-7.0.27\webapps\host-manager
> Mar 11, 2013 4:37:12 PM org.apache.catalina.startup.HostConfig
> deployDirectory
> INFO: Deploying web application directory C:\tomcat-7.0.27\webapps\manager
> Mar 11, 2013 4:37:13 PM org.apache.catalina.startup.HostConfig
> deployDirectory
> INFO: Deploying web application directory C:\tomcat-7.0.27\webapps\ROOT
> Mar 11, 2013 4:37:13 PM org.apache.coyote.AbstractProtocol start
> INFO: Starting ProtocolHandler ["http-apr-8085"]
> Mar 11, 2013 4:37:13 PM org.apache.catalina.startup.Catalina start
> INFO: Server startup in 26697 ms
>
>
> --
>
> *Fatema Uddin**
> *----------------------------------------
> *Junior Advisor HIS*
> Priority Area Health
> Deutsche Gesellschaft für Internationale Zusammenarbeit (GIZ) GmbH
> House10/A, Road 90, Gulshan 2, Dhaka 1212, Bangladesh
> *Office location:*
> Monitoring & Evaluation Unit
> Ministry of Health and Family Welfare
> Janashankha Bhaban (2nd Floor), Azimpur
> Dhaka 1205, Bangladesh
>
> Phone: +880 2 966 53 13
> Fax:   +880 2 966 53 14
> **
>
> _______________________________________________
> Mailing list: https://launchpad.net/~dhis2-users
> Post to     : dhis2-users@xxxxxxxxxxxxxxxxxxx
> Unsubscribe : https://launchpad.net/~dhis2-users
> More help   : https://help.launchpad.net/ListHelp
>
>
> _______________________________________________
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> More help   : https://help.launchpad.net/ListHelp
>
>
References

Connection error
From: Uddin Fatema, 2013-03-11
Re: Connection error
From: Knut Staring, 2013-03-12