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- Work on ODE test problems, trying to get all test problems to run cleanly [...]

To: dolfin-dev@xxxxxxxxxx
From: dolfin@xxxxxxxxxx
Date: Wed, 22 Jun 2005 20:23:38 +0200
Reply-to: Discussion of DOLFIN development <dolfin-dev@xxxxxxxxxx>
Sender: Anders Logg <logg@xxxxxxxxxx>
Commit from logg (2005-06-22 20:23 CEST)
----------------

- Work on ODE test problems, trying to get all test problems to run cleanly
- Implement automatic detection of sparsity pattern from given matrix
- Clean up homotopy solver
- Implement automatic computation of Jacobian
- Make StiffnessMatrix respect given diffusion epsilon

  dolfin  ChangeLog                                               1.215
  dolfin  src/demo/la/Makefile                                    1.255
  dolfin  src/demo/solvers/ode/bistable/main.cpp                  1.18
  dolfin  src/demo/solvers/ode/complex/main.cpp                   1.2
  dolfin  src/demo/solvers/ode/homotopy/economy/CES.h             1.10
  dolfin  src/demo/solvers/ode/homotopy/economy/ces.cpp           1.4
  dolfin  src/demo/solvers/ode/lorenz/main.cpp                    1.17
  dolfin  src/demo/solvers/ode/lorenz/plotlaps.m                  1.4
  dolfin  src/demo/solvers/ode/newton/main.cpp                    1.4
  dolfin  src/demo/solvers/ode/performance/main.cpp               1.11
  dolfin  src/demo/solvers/ode/stiff/Makefile                     1.212
  dolfin  src/demo/solvers/ode/stiff/stabilization/main.cpp       1.5
  dolfin  src/demo/solvers/ode/stiff/testproblems/TestProblem1.h  1.2
  dolfin  src/demo/solvers/ode/stiff/testproblems/TestProblem2.h  1.5
  dolfin  src/demo/solvers/ode/stiff/testproblems/TestProblem3.h  1.5
  dolfin  src/demo/solvers/ode/stiff/testproblems/TestProblem4.h  1.4
  dolfin  src/demo/solvers/ode/stiff/testproblems/TestProblem5.h  1.4
  dolfin  src/demo/solvers/ode/stiff/testproblems/TestProblem6.h  1.4
  dolfin  src/demo/solvers/ode/stiff/testproblems/TestProblem7.h  1.7
  dolfin  src/demo/solvers/ode/stiff/testproblems/TestProblem8.h  1.5
  dolfin  src/demo/solvers/ode/stiff/testproblems/TestProblem9.h  1.5
  dolfin  src/demo/solvers/ode/stiff/testproblems/main.cpp        1.21
  dolfin  src/kernel/fem/Makefile                                 1.266
  dolfin  src/kernel/fem/StiffnessMatrix.cpp                      1.6
  dolfin  src/kernel/fem/dolfin/StiffnessMatrix2D.form            1.2
  dolfin  src/kernel/fem/dolfin/StiffnessMatrix2D.h               1.2
  dolfin  src/kernel/fem/dolfin/StiffnessMatrix3D.form            1.2
  dolfin  src/kernel/fem/dolfin/StiffnessMatrix3D.h               1.2
  dolfin  src/kernel/log/Progress.cpp                             1.11
  dolfin  src/kernel/log/dolfin/Progress.h                        1.5
  dolfin  src/kernel/ode/Dependencies.cpp                         1.8
  dolfin  src/kernel/ode/Homotopy.cpp                             1.22
  dolfin  src/kernel/ode/ODE.cpp                                  1.37
  dolfin  src/kernel/ode/TimeSlabSolver.cpp                       1.27
  dolfin  src/kernel/ode/TimeStepper.cpp                          1.72
  dolfin  src/kernel/ode/dolfin/Homotopy.h                        1.11
  dolfin  src/kernel/ode/dolfin/ODE.h                             1.38
  dolfin  src/kernel/settings/Parameter.cpp                       1.10
  dolfin  src/kernel/settings/dolfin/Settings.h                   1.53