dolfin team mailing list archive

[Alexander Jarosch <alexanj@xxxxx>]

I just pulled the new code and still there is a problem. I get this 
error message

Converting from gmsh ".gmsh" to DOLFIN XML format
Expecting 226 vertices
Found all vertices
Expecting 1200 cells
Traceback (most recent call last):
 File "/home/alex/dolfin/local/bin/dolfin-convert", line 363, in ?
   main(sys.argv[1:])
 File "/home/alex/dolfin/local/bin/dolfin-convert", line 52, in main
   gmsh2xml(ifilename, ofilename)
 File "/home/alex/dolfin/local/bin/dolfin-convert", line 280, in gmsh2xml
   n0 = nodelist[int(element[5])]
IndexError: list index out of range

I use gmsh 1.64 but also with gmsh 1.51.0 which strictly exports gmsh 
msh format 1.0 I get the same error.

/ALex

Anders Logg wrote:

> Was this resolved? Does the fix Garth made to the conversion script
> fix the problem?
>
> /Anders
>
>
> On Tue, Mar 14, 2006 at 09:52:34AM +0000, Alexander Jarosch wrote:
>  
>
> > Well I use gmsh 1.64.0 and there is only one gmsh .msh file version, I 
> > think it is version 2.0 but on the first glance it looks like version 1.0.
> >
> > /Alex
> >
> > Garth N. Wells wrote:
> >
> >    
> >
> > > On Mon, 2006-03-13 at 14:27 +0000, Alexander Jarosch wrote:
> > >
> > >
> > >      
> > >
> > > > Hello everybody,
> > > >
> > > > I tried to convert a gmsh mesh to the dolfin format with dolfin-convert 
> > > > and in crashes with this error message:
> > > >
> > > > Converting from gmsh ".gmsh" to DOLFIN XML format
> > > > Expecting 165 vertices
> > > > Found all vertices
> > > > Expecting 618 cells
> > > > Traceback (most recent call last):
> > > > File "/home/alex/dolfin/local/bin/dolfin-convert", line 362, in ?
> > > >  main(sys.argv[1:])
> > > > File "/home/alex/dolfin/local/bin/dolfin-convert", line 52, in main
> > > >  gmsh2xml(ifilename, ofilename)
> > > > File "/home/alex/dolfin/local/bin/dolfin-convert", line 278, in gmsh2xml
> > > >  n1 = nodelist[int(element[6])]
> > > > IndexError: list index out of range
> > > >
> > > > I did not look further into this problem, just wanted to let the 
> > > > developers know.
> > > >  
> > > >
> > > >        
> > > Which version of the gmsh output format are you using?
> > >
> > > Garth
> > >
> > >
> > >
> > >
> > >      
> > >
> > > > If you would need the gmsh mesh file, no problem, let me know.
> > > >
> > > > Yes and another question, does the mesh have to be sorted in some way 
> > > > when it is importet into dolfin?
> > > >
> > > > /Alex
> > > >
> > > >  
> > > >
> > > >        
> >    
>
>  


--
Alexander H. Jarosch

Jarðvísindastofnun Háskólans
Institute of Earth Sciences, University of Iceland
Náttúrufræðahús, Askja
Building of Natural Sciences, Askja
Sturlugata 7
IS - 101 Reykjavík
Iceland

Tel.: +354 525 4906
http://raunvis.hi.is/~jarosch/