dolfin team mailing list archive

[Alireza Forghani <arforghani@xxxxxxxxx>]

Hi Anders,

Configuration says:

/using PETSC_DIR=/data/alireza/petsc-2.3.1-p11
disabling compilation of PyDOLFIN
checking for configarch... yes/

but exactly after that when I try to compile demo the error appears:


//data/daan/FeNics/petsc-2.3.1-p2: Permission denied
/data/daan/FeNics/petsc-2.3.1-p2/bmake/linux-gnu-intel: Permission denied
/data/daan/FeNics/petsc-2.3.1-p2/include: Permission denied
/data/daan/FeNics/petsc-2.3.1-p2/include/mpiuni: Permission denied
/data/daan/FeNics/petsc-2.3.1-p2: Permission denied
/data/daan/FeNics/petsc-2.3.1-p2/bmake/linux-gnu-intel: Permission denied
/data/daan/FeNics/petsc-2.3.1-p2/include: Permission denied
/data/daan/FeNics/petsc-2.3.1-p2/include/mpiuni: Permission denied
make[3]: *** [main.o] Error 1/

As you see it tries to use another library.

I also used:

/export PATH="data/alireza/dolfin0.6.1/local/bin:$PATH"/

and these are what exactly PETSc says after configuration:
/
=================================================================================
            Configuring PETSc to compile on your system                         
=================================================================================
Compilers:                                                                                                                                                                        
 C Compiler:         mpicc  -fPIC -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -g3 
 Fortran Compiler:   mpif77  -fPIC -Wall -g  
Linkers:
 Shared linker:   mpicc  -shared  -fPIC -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -g3 
 Dynamic linker:   mpicc  -shared  -fPIC -Wall -Wshadow -Wwrite-strings -fomit-frame-pointer -g3 
PETSc:
 **
 ** Before running "make" your PETSC_ARCH must be specified with:
 **  ** setenv PETSC_ARCH linux-gnu-c-real-debug (csh/tcsh)
 **  ** PETSC_ARCH=linux-gnu-c-real-debug; export PETSC_ARCH (sh/bash)
 **
 PETSC_DIR: /data/alireza/petsc-2.3.1-p11
 **
 ** Now build and test the libraries with "make all test"
 **
 Scalar type:real
 Clanguage: C
MPI:
 PETSc shared libraries: disabled
 PETSc dynamic libraries: disabled
X11:
 Includes: ['-I/usr/X11R6/include']
 Library: ['-L/usr/X11R6/lib -lX11']
BLAS/LAPACK: -Wl,-rpath,/data/alireza/petsc-2.3.1-p11/externalpackages/fblaslapack/linux-gnu-c-real-debug -L/data/alireza/petsc-2.3.1-p11/externalpackages/fblaslapack/linux-gnu-c-real-debug -lflapack -Wl,-rpath,/data/alireza/petsc-2.3.1-p11/externalpackages/fblaslapack/linux-gnu-c-real-debug -L/data/alireza/petsc-2.3.1-p11/externalpackages/fblaslapack/linux-gnu-c-real-debug -lfblas
/

Thank You,
Alireza
PS.: I did these steps and I installed and compiled demos of DOLFIN on Cygwin/x successfully. 



Date: Thu, 6 Apr 2006 17:57:39 -0500
From: Anders Logg <logg@xxxxxxxxx>
Subject: Re: [DOLFIN-dev] Problems with compiling DOLFIN on Redhat
To: Discussion of DOLFIN development <dolfin-dev@xxxxxxxxxx>
Message-ID: <20060406225739.GA24308@xxxxxxxxx>
Content-Type: text/plain; charset=us-ascii

What does configure say about PETSc during configure? Look for
something like

   using PETSC_DIR=/usr/local/lib/petsc

Another thing to check is if you have set the PATH correctly. Did you
add <path to dolfin>/local/bin to PATH?

/Anders


On Thu, Apr 06, 2006 at 12:22:49PM -0700, Alireza Forghani wrote:

> > Hi,
> > 
> > I tried to install DOLFIN on a local (not root ) accont on RedHat and I 
> > followed these steps:
> > 1- installing PETSC
> > 2- assigning PETSC_DIR to local folder of PETSC
> > 3- configure dolfine using configure.local option
> > ( in configuration process dolfin accepted my local PETSC folder as the 
> > source for libraries of PETSC
> > 4- make
> > 5- make install
> > 
> > the problem is when I wanna compile demo files, dolfin calls a PETSC 
> > liberary which is installed on another account on this redhat server and 
> > gives the error message: permission denied.
> > It seems that although I have assigned my local PETSC to be the source 
> > for PETSC,  DOLFIN is trying to use another PETSC which is installed on 
> > another account.
> > 
> > 
> > Alireza Forghani,
> > PhD Student, Structural Engineering
> > Room 1007D, Dep. of Civil Engineering
> > The University of British Columbia
> > Vancouver, BC, Canada
> > Tel: 778 241 5316
> > Email: forghani@xxxxxxxxxxxx