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Re: Compilation failed: --enable-debug --with-petsc-dir=/home/dolfin/local/lib/petsc

To: Discussion of DOLFIN development <dolfin-dev@xxxxxxxxxx>
From: Anders Logg <logg@xxxxxxxxx>
Date: Fri, 7 Jul 2006 20:04:31 +0200
Delivered-to: dolfin-dev@xxxxxxxxxx
In-reply-to: <20060707160521.0A7B03D69@communalis.simula.no>
Mail-followup-to: Discussion of DOLFIN development <dolfin-dev@xxxxxxxxxx>
User-agent: Mutt/1.5.11
Should be fixed now.

/Anders


On Fri, Jul 07, 2006 at 06:05:21PM +0200, DOLFIN wrote:
> This is an automated message from the FEniCS compile bot.
> Compilation failed with configure options --enable-debug --with-petsc-dir=/home/dolfin/local/lib/petsc.
> Revision number and compilation log follow below.
> 
> changeset:   2051:00831c17e50e
> tag:         tip
> user:        "Anders Logg <logg@xxxxxxxxx>"
> date:        Fri Jul 07 15:50:44 2006 +0200
> summary:     Remove PETSc ifdef from Poisson module.
> 
> 
> [snip]
> if /bin/sh ../../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"dolfin\" -DPACKAGE_TARNAME=\"dolfin\" -DPACKAGE_VERSION=\"0.6.1\" -DPACKAGE_STRING=\"dolfin\ 0.6.1\" -DPACKAGE_BUGREPORT=\"dolfin@xxxxxxxxxx\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1  -I. -I. -I../../../src/kernel/common -I../../../src/kernel/fem -I../../../src/kernel/form -I../../../src/kernel/function -I../../../src/kernel/io -I../../../src/kernel/la -I../../../src/kernel/main -I../../../src/kernel/math -I../../../src/kernel/mesh -I../../../src/kernel/nls -I../../../src/kernel/ode -I../../../src/kernel/pde -I../../../src/kernel/quadrature -I../../../src/kernel/parameter -I../../../src/kernel/log  -DHAVE_PETSC_H=1 -I/home/dolfin/local/lib/petsc -I/home/dolfin/local/lib/petsc/bmake/linux-gnu-cxx-real-debug -I/home/dolfin/local/lib/petsc/include -I/home/dolfin/local/lib/petsc/externalpackages/mpich2-1.0.3/linux-gnu-cxx-real-debug/include    -I/usr/include/libxml2    -DDEBUG=1 -g -O2 -Wall -Werror -ansi -pedantic -Wno-long-long -std=c++98 -MT Preconditioner.lo -MD -MP -MF ".deps/Preconditioner.Tpo" -c -o Preconditioner.lo Preconditioner.cpp; \
> 	then mv -f ".deps/Preconditioner.Tpo" ".deps/Preconditioner.Plo"; else rm -f ".deps/Preconditioner.Tpo"; exit 1; fi
>  g++ -DPACKAGE_NAME=\"dolfin\" -DPACKAGE_TARNAME=\"dolfin\" -DPACKAGE_VERSION=\"0.6.1\" "-DPACKAGE_STRING=\"dolfin 0.6.1\"" -DPACKAGE_BUGREPORT=\"dolfin@xxxxxxxxxx\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -I. -I. -I../../../src/kernel/common -I../../../src/kernel/fem -I../../../src/kernel/form -I../../../src/kernel/function -I../../../src/kernel/io -I../../../src/kernel/la -I../../../src/kernel/main -I../../../src/kernel/math -I../../../src/kernel/mesh -I../../../src/kernel/nls -I../../../src/kernel/ode -I../../../src/kernel/pde -I../../../src/kernel/quadrature -I../../../src/kernel/parameter -I../../../src/kernel/log -DHAVE_PETSC_H=1 -I/home/dolfin/local/lib/petsc -I/home/dolfin/local/lib/petsc/bmake/linux-gnu-cxx-real-debug -I/home/dolfin/local/lib/petsc/include -I/home/dolfin/local/lib/petsc/externalpackages/mpich2-1.0.3/linux-gnu-cxx-real-debug/include -I/usr/include/libxml2 -DDEBUG=1 -g -O2 -Wall -Werror -ansi -pedantic -Wno-long-long -std=c++98 -MT Preconditioner.lo -MD -MP -MF .deps/Preconditioner.Tpo -c Preconditioner.cpp  -fPIC -DPIC -o .libs/Preconditioner.o
>  g++ -DPACKAGE_NAME=\"dolfin\" -DPACKAGE_TARNAME=\"dolfin\" -DPACKAGE_VERSION=\"0.6.1\" "-DPACKAGE_STRING=\"dolfin 0.6.1\"" -DPACKAGE_BUGREPORT=\"dolfin@xxxxxxxxxx\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -I. -I. -I../../../src/kernel/common -I../../../src/kernel/fem -I../../../src/kernel/form -I../../../src/kernel/function -I../../../src/kernel/io -I../../../src/kernel/la -I../../../src/kernel/main -I../../../src/kernel/math -I../../../src/kernel/mesh -I../../../src/kernel/nls -I../../../src/kernel/ode -I../../../src/kernel/pde -I../../../src/kernel/quadrature -I../../../src/kernel/parameter -I../../../src/kernel/log -DHAVE_PETSC_H=1 -I/home/dolfin/local/lib/petsc -I/home/dolfin/local/lib/petsc/bmake/linux-gnu-cxx-real-debug -I/home/dolfin/local/lib/petsc/include -I/home/dolfin/local/lib/petsc/externalpackages/mpich2-1.0.3/linux-gnu-cxx-real-debug/include -I/usr/include/libxml2 -DDEBUG=1 -g -O2 -Wall -Werror -ansi -pedantic -Wno-long-long -std=c++98 -MT Preconditioner.lo -MD -MP -MF .deps/Preconditioner.Tpo -c Preconditioner.cpp -o Preconditioner.o >/dev/null 2>&1
> if /bin/sh ../../../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"dolfin\" -DPACKAGE_TARNAME=\"dolfin\" -DPACKAGE_VERSION=\"0.6.1\" -DPACKAGE_STRING=\"dolfin\ 0.6.1\" -DPACKAGE_BUGREPORT=\"dolfin@xxxxxxxxxx\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1  -I. -I. -I../../../src/kernel/common -I../../../src/kernel/fem -I../../../src/kernel/form -I../../../src/kernel/function -I../../../src/kernel/io -I../../../src/kernel/la -I../../../src/kernel/main -I../../../src/kernel/math -I../../../src/kernel/mesh -I../../../src/kernel/nls -I../../../src/kernel/ode -I../../../src/kernel/pde -I../../../src/kernel/quadrature -I../../../src/kernel/parameter -I../../../src/kernel/log  -DHAVE_PETSC_H=1 -I/home/dolfin/local/lib/petsc -I/home/dolfin/local/lib/petsc/bmake/linux-gnu-cxx-real-debug -I/home/dolfin/local/lib/petsc/include -I/home/dolfin/local/lib/petsc/externalpackages/mpich2-1.0.3/linux-gnu-cxx-real-debug/include    -I/usr/include/libxml2    -DDEBUG=1 -g -O2 -Wall -Werror -ansi -pedantic -Wno-long-long -std=c++98 -MT uBlasKrylovMatrix.lo -MD -MP -MF ".deps/uBlasKrylovMatrix.Tpo" -c -o uBlasKrylovMatrix.lo uBlasKrylovMatrix.cpp; \
> 	then mv -f ".deps/uBlasKrylovMatrix.Tpo" ".deps/uBlasKrylovMatrix.Plo"; else rm -f ".deps/uBlasKrylovMatrix.Tpo"; exit 1; fi
>  g++ -DPACKAGE_NAME=\"dolfin\" -DPACKAGE_TARNAME=\"dolfin\" -DPACKAGE_VERSION=\"0.6.1\" "-DPACKAGE_STRING=\"dolfin 0.6.1\"" -DPACKAGE_BUGREPORT=\"dolfin@xxxxxxxxxx\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -I. -I. -I../../../src/kernel/common -I../../../src/kernel/fem -I../../../src/kernel/form -I../../../src/kernel/function -I../../../src/kernel/io -I../../../src/kernel/la -I../../../src/kernel/main -I../../../src/kernel/math -I../../../src/kernel/mesh -I../../../src/kernel/nls -I../../../src/kernel/ode -I../../../src/kernel/pde -I../../../src/kernel/quadrature -I../../../src/kernel/parameter -I../../../src/kernel/log -DHAVE_PETSC_H=1 -I/home/dolfin/local/lib/petsc -I/home/dolfin/local/lib/petsc/bmake/linux-gnu-cxx-real-debug -I/home/dolfin/local/lib/petsc/include -I/home/dolfin/local/lib/petsc/externalpackages/mpich2-1.0.3/linux-gnu-cxx-real-debug/include -I/usr/include/libxml2 -DDEBUG=1 -g -O2 -Wall -Werror -ansi -pedantic -Wno-long-long -std=c++98 -MT uBlasKrylovMatrix.lo -MD -MP -MF .deps/uBlasKrylovMatrix.Tpo -c uBlasKrylovMatrix.cpp  -fPIC -DPIC -o .libs/uBlasKrylovMatrix.o
> cc1plus: warnings being treated as errors
> ./dolfin/uBlasMatrix.h: In member function 'void dolfin::uBlasMatrix<Mat>::disp(dolfin::uint) const [with Mat = boost::numeric::ublas::compressed_matrix<double, boost::numeric::ublas::basic_row_major<unsigned int, int>, 0u, boost::numeric::ublas::unbounded_array<unsigned int, std::allocator<unsigned int> >, boost::numeric::ublas::unbounded_array<double, std::allocator<double> > >]':
> uBlasKrylovMatrix.cpp:38:   instantiated from here
> ./dolfin/uBlasMatrix.h:312: warning: unused variable 'N'
> make[4]: *** [uBlasKrylovMatrix.lo] Error 1
> make[4]: Leaving directory `/home/dolfin/tmp/cron/compilebot/dolfin/src/kernel/la'
> make[3]: *** [all-recursive] Error 1
> make[3]: Leaving directory `/home/dolfin/tmp/cron/compilebot/dolfin/src/kernel/la'
> make[2]: *** [all-recursive] Error 1
> make[2]: Leaving directory `/home/dolfin/tmp/cron/compilebot/dolfin/src/kernel'
> make[1]: *** [all-recursive] Error 1
> make[1]: Leaving directory `/home/dolfin/tmp/cron/compilebot/dolfin/src'
> make: *** [all-recursive] Error 1
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References

Compilation failed: --enable-debug --with-petsc-dir=/home/dolfin/local/lib/petsc
From: DOLFIN, 2006-07-07