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Re: elasticity demo timings

 



Anders Logg wrote:
On Tue, Apr 24, 2007 at 06:40:08PM +0200, Garth N. Wells wrote:

Anders Logg wrote:
On Tue, Apr 24, 2007 at 05:28:46PM +0200, Garth N. Wells wrote:
Anders Logg wrote:
On Tue, Apr 24, 2007 at 04:37:13PM +0200, Garth N. Wells wrote:
I've done some rough timings for assembly of the elasticity demo with the mesh refined once. For assembly, things are much faster (almost a factor 3), but the application of Dirichlet boundary conditions has become very expensive. Both the creation of sub-domains and the application of the boundary conditions appears to be quite costly. Of the time required for mesh initialisation, refinement, assembly and application of boundary conditions, more the 50% of the runtime involves the application of the boundary conditions. In version 0.64, the application of boundary conditions involves almost zero overhead.

Garth
Strange... There are are a few differences in how the bcs are handled
compared to 0.6.4 but I didn't think these would introduce any
overhead. Here are the major differences:

1. We loop over the whole domain, not just the boundary

This means we can set Dirichlet conditions in the interior as well as
on the boundary. The overhead should be small, since before we always
created a BoundaryMesh before iterating over the boundary and that
creation involves an iteration over the entire mesh, as well as
creating the new data for the boundary mesh.
2. We create the mesh functions for the sub domains

This is only done when a mesh function has not been supplied. If you
have a mesh function that specifies the sub domains, then this step is
not needed. Perhaps we could do some optimization in the
BoundaryCondition constructor.

Creating the sub-domains is very expensive: 11.1 / 24 s. Application of the boundary conditions (bc.apply(. . .)) requires 3.41 / 24 s, which still seems like quite a lot.

Garth
ok, so we need to look into that. I'm working on getting the Stokes
demo working (setting bcs for sub systems) but I can take a closer
look when I'm done (if you don't find a solution before then).

Creating the sub domains should be just as expensive as creating the
BoundaryMesh in the old code.

The expense is in initialising the connectivity (mesh.init(...) ). It is dominating the creation of a the BoundaryCondition as this is when it is first called.

Garth

ok, that sounds good in the sense that we do the same initialization
in the old code when creating the BoundaryMesh. Is the initialization
done more than once? The second time it gets called it should realize
that the entities are already there and don't need to be generated.


It's only done once.

Garth


/Anders
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