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error while making libraries

 

Trying to make dolfin libraries on an OS X 10.5.1 machine with PETSc, I get the enclosed error. Any thoughts?


-gideon

mpicc -dynamiclib ${wl}-flat_namespace ${wl}-undefined ${wl}suppress - o .libs/libdolfin.0.0.0.dylib ../../src/kernel/common/.libs/ TimeDependent.o ../../src/kernel/common/.libs/Variable.o ../../src/ kernel/common/.libs/timing.o ../../src/kernel/common/.libs/ utils.o ../../src/kernel/elements/.libs/ElementLibrary.o ../../src/ kernel/fem/.libs/Assembler.o ../../src/kernel/fem/.libs/ BoundaryCondition.o ../../src/kernel/fem/.libs/DirichletBC.o ../../src/ kernel/fem/.libs/DofMap.o ../../src/kernel/fem/.libs/DofMapSet.o ../../ src/kernel/fem/.libs/PeriodicBC.o ../../src/kernel/fem/.libs/ SparsityPatternBuilder.o ../../src/kernel/fem/.libs/SubSystem.o ../../ src/kernel/fem/.libs/UFC.o ../../src/kernel/fem/.libs/assemble.o ../../ src/kernel/function/.libs/ConstantFunction.o ../../src/kernel/ function/.libs/DiscreteFunction.o ../../src/kernel/function/.libs/ Function.o ../../src/kernel/function/.libs/UserFunction.o ../../src/ kernel/graph/.libs/DirectedClique.o ../../src/kernel/graph/.libs/ Graph.o ../../src/kernel/graph/.libs/GraphEditor.o ../../src/kernel/ graph/.libs/GraphPartition.o ../../src/kernel/graph/.libs/ UndirectedClique.o ../../src/kernel/io/.libs/File.o ../../src/kernel/ io/.libs/GenericFile.o ../../src/kernel/io/.libs/MFile.o ../../src/ kernel/io/.libs/MatlabFile.o ../../src/kernel/io/.libs/ OctaveFile.o ../../src/kernel/io/.libs/OpenDXFile.o ../../src/kernel/ io/.libs/PythonFile.o ../../src/kernel/io/.libs/VTKFile.o ../../src/ kernel/io/.libs/XMLBLASFormData.o ../../src/kernel/io/.libs/ XMLDofMap.o ../../src/kernel/io/.libs/XMLFile.o ../../src/kernel/ io/.libs/XMLFiniteElement.o ../../src/kernel/io/.libs/ XMLFunction.o ../../src/kernel/io/.libs/XMLGraph.o ../../src/kernel/ io/.libs/XMLMatrix.o ../../src/kernel/io/.libs/XMLMesh.o ../../src/ kernel/io/.libs/XMLMeshFunction.o ../../src/kernel/io/.libs/ XMLObject.o ../../src/kernel/io/.libs/XMLParameterList.o ../../src/ kernel/io/.libs/XMLVector.o ../../src/kernel/la/.libs/GMRES.o ../../ src/kernel/la/.libs/LU.o ../../src/kernel/la/.libs/ PETScKrylovMatrix.o ../../src/kernel/la/.libs/ PETScKrylovSolver.o ../../src/kernel/la/.libs/PETScLUSolver.o ../../ src/kernel/la/.libs/PETScManager.o ../../src/kernel/la/.libs/ PETScMatrix.o ../../src/kernel/la/.libs/PETScPreconditioner.o ../../ src/kernel/la/.libs/PETScVector.o ../../src/kernel/la/.libs/ SLEPcEigenvalueSolver.o ../../src/kernel/la/.libs/ SparsityPattern.o ../../src/kernel/la/.libs/solve.o ../../src/kernel/ la/.libs/uBlasDummyPreconditioner.o ../../src/kernel/la/.libs/ uBlasILUPreconditioner.o ../../src/kernel/la/.libs/ uBlasKrylovMatrix.o ../../src/kernel/la/.libs/ uBlasKrylovSolver.o ../../src/kernel/la/.libs/uBlasLUSolver.o ../../ src/kernel/la/.libs/uBlasVector.o ../../src/kernel/main/.libs/ init.o ../../src/kernel/math/.libs/Lagrange.o ../../src/kernel/ math/.libs/Legendre.o ../../src/kernel/math/.libs/basic.o ../../src/ kernel/mesh/.libs/BoundaryComputation.o ../../src/kernel/mesh/.libs/ BoundaryMesh.o ../../src/kernel/mesh/.libs/Cell.o ../../src/kernel/ mesh/.libs/CellType.o ../../src/kernel/mesh/.libs/Edge.o ../../src/ kernel/mesh/.libs/Face.o ../../src/kernel/mesh/.libs/Facet.o ../../src/ kernel/mesh/.libs/GTSInterface.o ../../src/kernel/mesh/.libs/ GeometricPredicates.o ../../src/kernel/mesh/.libs/ IntersectionDetector.o ../../src/kernel/mesh/.libs/Interval.o ../../ src/kernel/mesh/.libs/LocalMeshCoarsening.o ../../src/kernel/ mesh/.libs/LocalMeshRefinement.o ../../src/kernel/mesh/.libs/ MPIMeshCommunicator.o ../../src/kernel/mesh/.libs/Mesh.o ../../src/ kernel/mesh/.libs/MeshConnectivity.o ../../src/kernel/mesh/.libs/ MeshData.o ../../src/kernel/mesh/.libs/MeshEditor.o ../../src/kernel/ mesh/.libs/MeshEntity.o ../../src/kernel/mesh/.libs/ MeshEntityIterator.o ../../src/kernel/mesh/.libs/MeshGeometry.o ../../ src/kernel/mesh/.libs/MeshHierarchy.o ../../src/kernel/mesh/.libs/ MeshHierarchyAlgorithms.o ../../src/kernel/mesh/.libs/ MeshOrdering.o ../../src/kernel/mesh/.libs/MeshPartition.o ../../src/ kernel/mesh/.libs/MeshTopology.o ../../src/kernel/mesh/.libs/ Point.o ../../src/kernel/mesh/.libs/SubDomain.o ../../src/kernel/ mesh/.libs/Tetrahedron.o ../../src/kernel/mesh/.libs/ TopologyComputation.o ../../src/kernel/mesh/.libs/Triangle.o ../../src/ kernel/mesh/.libs/UniformMeshRefinement.o ../../src/kernel/mesh/.libs/ UnitCube.o ../../src/kernel/mesh/.libs/UnitSquare.o ../../src/kernel/ mesh/.libs/Vertex.o ../../src/kernel/mf/.libs/MatrixFactory.o ../../ src/kernel/nls/.libs/NewtonSolver.o ../../src/kernel/nls/.libs/ NonlinearProblem.o ../../src/kernel/ode/.libs/Adaptivity.o ../../src/ kernel/ode/.libs/Alloc.o ../../src/kernel/ode/.libs/ComplexODE.o ../../ src/kernel/ode/.libs/Controller.o ../../src/kernel/ode/.libs/ Dependencies.o ../../src/kernel/ode/.libs/Dual.o ../../src/kernel/ ode/.libs/Homotopy.o ../../src/kernel/ode/.libs/ HomotopyJacobian.o ../../src/kernel/ode/.libs/HomotopyODE.o ../../src/ kernel/ode/.libs/Method.o ../../src/kernel/ode/.libs/ MonoAdaptiveFixedPointSolver.o ../../src/kernel/ode/.libs/ MonoAdaptiveJacobian.o ../../src/kernel/ode/.libs/ MonoAdaptiveNewtonSolver.o ../../src/kernel/ode/.libs/ MonoAdaptiveTimeSlab.o ../../src/kernel/ode/.libs/ MonoAdaptivity.o ../../src/kernel/ode/.libs/ MultiAdaptiveFixedPointSolver.o ../../src/kernel/ode/.libs/ MultiAdaptiveJacobian.o ../../src/kernel/ode/.libs/ MultiAdaptiveNewtonSolver.o ../../src/kernel/ode/.libs/ MultiAdaptivePreconditioner.o ../../src/kernel/ode/.libs/ MultiAdaptiveTimeSlab.o ../../src/kernel/ode/.libs/ MultiAdaptivity.o ../../src/kernel/ode/.libs/ODE.o ../../src/kernel/ ode/.libs/ODESolver.o ../../src/kernel/ode/.libs/Partition.o ../../src/ kernel/ode/.libs/ReducedModel.o ../../src/kernel/ode/.libs/ Sample.o ../../src/kernel/ode/.libs/TimeSlab.o ../../src/kernel/ ode/.libs/TimeSlabJacobian.o ../../src/kernel/ode/.libs/ TimeSlabSolver.o ../../src/kernel/ode/.libs/TimeStepper.o ../../src/ kernel/ode/.libs/UpdatedMultiAdaptiveJacobian.o ../../src/kernel/ ode/.libs/cGqMethod.o ../../src/kernel/ode/.libs/dGqMethod.o ../../src/ kernel/pde/.libs/LinearPDE.o ../../src/kernel/pde/.libs/ NonlinearPDE.o ../../src/kernel/quadrature/.libs/ GaussQuadrature.o ../../src/kernel/quadrature/.libs/ GaussianQuadrature.o ../../src/kernel/quadrature/.libs/ LobattoQuadrature.o ../../src/kernel/quadrature/.libs/ Quadrature.o ../../src/kernel/quadrature/.libs/RadauQuadrature.o ../../ src/kernel/parameter/.libs/Parameter.o ../../src/kernel/ parameter/.libs/ParameterList.o ../../src/kernel/parameter/.libs/ ParameterSystem.o ../../src/kernel/parameter/.libs/ ParameterValue.o ../../src/kernel/parameter/.libs/Parametrized.o ../../ src/kernel/parameter/.libs/parameters.o ../../src/kernel/log/.libs/ Event.o ../../src/kernel/log/.libs/LogManager.o ../../src/kernel/ log/.libs/LogStream.o ../../src/kernel/log/.libs/Logger.o ../../src/ kernel/log/.libs/Progress.o ../../src/kernel/log/.libs/log.o ../../src/ kernel/plot/.libs/plot.o -L/opt/petsc-2.3.3-p8/lib/darwin9.1.0-cxx- debug -lpetscts -lpetscsnes -lpetscksp -lpetscdm -lpetscmat -lpetscvec -lpetsc -L/opt/slepc-2.3.3/lib/darwin9.1.0-cxx-debug -lslepc -L/sw/ lib /sw/lib/libxml2.dylib -lz -lpthread -lm -L/opt/petsc-2.3.3-p8/ externalpackages/UMFPACKv4.3/darwin9.1.0-cxx-debug/AMD/Lib -lamd -L/ opt/petsc-2.3.3-p8/externalpackages/UMFPACKv4.3/darwin9.1.0-cxx-debug/ UMFPACK/Lib -lumfpack -lblas /sw/lib/libglib-2.0.dylib /sw/lib/ libintl.dylib /sw/lib/libiconv.dylib -L/System/Library/Frameworks/ Python.framework/Versions/2.5/lib/python2.5/config -ldl -Wl,-rpath - Wl,/opt/petsc-2.3.3-p8/lib/darwin9.1.0-cxx-debug -Wl,-rpath -Wl,/opt/ slepc-2.3.3/lib/darwin9.1.0-cxx-debug -install_name /opt/lib/ libdolfin.0.dylib -compatibility_version 1 -current_version 1.0





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