dolfin team mailing list archive

[Gideon Simpson <grs2103@xxxxxxxxxxxx>]

I too have been seeing this error, but attributed it to using OS X  
10.5.  Also, I find that some, but not all, of pydolfin does work,  
such as the mesh related examples.  Things involving PETSc tend to  
cause these convulsions.


On Feb 15, 2008, at 11:02 AM, Harish Narayanan wrote:

> Kristian Oelgaard wrote:
> > I just cloned UFC, FFC and DOLFIN.
> >
> > When I run the
> > dolfin/src/demo/pde/poisson/python/demo.py
> >
> > I get a segmentation fault when assembling the linear form
> >
> >  Assembling rank 1 form.
> >  Assembling over 2048 cells.
> >  | Assembling over cells                                           |
> >   
> > |-----------------------------------------------------------------|  
> > 0.0%
> > Segmentation fault (core dumped)
> >
> > Has anyone experienced the same kind of problem?
>
> To reproduce this, I just updated UFC, FFC and DOLFIN. Upon rebuilding
> them (after a 'make distclean' for DOLFIN), I see the following. I
> believe it's a slightly more verbose manifestation of the your error.
> I'll step through it with gdb.
>
> # python demo.py
>
> <snip>
>
> | Assembling over cells                                           |
> |-----------------------------------------------------------------|  
> 0.0%
> [0]PETSC ERROR:
> ------------------------------------------------------------------------
> [0]PETSC ERROR: Caught signal number 10 BUS: Bus Error, possibly  
> illegal
> memory access
> [0]PETSC ERROR: Try option -start_in_debugger or - 
> on_error_attach_debugger
> [0]PETSC ERROR: or see
> http://www.mcs.anl.gov/petsc/petsc-as/documentation/troubleshooting.html#Signal 
> [0]PETSC
> ERROR: or try http://valgrind.org on linux or man libgmalloc on  
> Apple to
> find memory corruption errors
> [0]PETSC ERROR: configure using --with-debugging=yes, recompile, link,
> and run
> [0]PETSC ERROR: to get more information on the crash.
> [0]PETSC ERROR: --------------------- Error Message
> ------------------------------------
> [0]PETSC ERROR: Signal received!
> [0]PETSC ERROR:
> ------------------------------------------------------------------------
> [0]PETSC ERROR: Petsc Release Version 2.3.3, Patch 8, Fri Nov 16
> 17:03:40 CST 2007 HG revision:  
> 414581156e67e55c761739b0deb119f7590d0f4b
> [0]PETSC ERROR: See docs/changes/index.html for recent updates.
> [0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
> [0]PETSC ERROR: See docs/index.html for manual pages.
> [0]PETSC ERROR:
> ------------------------------------------------------------------------
> [0]PETSC ERROR: unknown on a darwin9.2 named edfico by hnarayan Fri  
> Feb
> 15 10:51:27 2008
> [0]PETSC ERROR: Libraries linked from
> /Users/hnarayan/Work/FEniCS/petsc-2.3.3-p8/lib/darwin9.2.0-cxx-opt
> [0]PETSC ERROR: Configure run at Wed Feb 13 20:26:19 2008
> [0]PETSC ERROR: Configure options --with-fc=0 --with-clanguage=cxx
> --with-debugging=0 COPTFLAGS=-O3 --with-shared=0
> [0]PETSC ERROR:
> ------------------------------------------------------------------------
> [0]PETSC ERROR: User provided function() line 0 in unknown directory
> unknown file
> [edfico:37499] MPI_ABORT invoked on rank 0 in communicator
> MPI_COMM_WORLD with errorcode 59
>
>
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