dolfin team mailing list archive

[Reza Farrahi Moghaddam <imriss@xxxxxxxxx>]

Thanks Dag,

There is an error, when I issue the 'make' in Matlab. Because my dolfin and other libs are installed locally, the make.m file is a bit different:
------------------------------------------------------------------------------------------------------------------------------
disp('Building Poisson-solver MEX')
mex poisson_DOLFIN.cpp psolver.cpp ...
-I/home/rfarahi/math/dolfin-0.7.2/linux-opt/include ...
-I/home/rfarahi/math/AMD/Include  ...
-I/home/rfarahi/math/UMFPACK/Include   ...
-L/usr/local/lib ...
-L/home/rfarahi/math/dolfin-0.7.2/linux-opt/lib -ldolfin ...
-L/home/rfarahi/math/AMD/Lib/ -lamd ...
-L/home/rfarahi/math/UMFPACK/Lib/ -lumfpack ...
    -lblas -lxml2
------------------------------------------------------------------------------------------------------------------------------


Here is the log of make command in Matlab enviroment. It seems there is some problem with vector_of_vector in ublas:
------------------------------------------------------------------------------------------------------------------------------
>> make
Building Poisson-solver MEX
Warning: You are using gcc version "3.4.6".  The earliest gcc version supported
with mex is "3.4.0".  The latest version tested for use with mex is "3.4.5".
To download a different version of gcc, visit http://gcc.gnu.org 
In file included from /home/rfarahi/math/dolfin-0.7.2/linux-opt/include/dolfin/ublas.h:12,
                 from /home/rfarahi/math/dolfin-0.7.2/linux-opt/include/dolfin/uBlasMatrix.h:22,
                 from /home/rfarahi/math/dolfin-0.7.2/linux-opt/include/dolfin/uBlasFactory.h:11,
                 from /home/rfarahi/math/dolfin-0.7.2/linux-opt/include/dolfin/dolfin_la.h:7,
                 from /home/rfarahi/math/dolfin-0.7.2/linux-opt/include/dolfin.h:9,
                 from psolver.h:6,
                 from poisson_DOLFIN.cpp:8:
/usr/include/boost/numeric/ublas/vector_of_vector.hpp:17:2: #error class generalized_vector_of_vector is experiment and currently does not work
In file included from /home/rfarahi/math/dolfin-0.7.2/linux-opt/include/dolfin/ublas.h:12,
                 from /home/rfarahi/math/dolfin-0.7.2/linux-opt/include/dolfin/uBlasMatrix.h:22,
                 from /home/rfarahi/math/dolfin-0.7.2/linux-opt/include/dolfin/uBlasFactory.h:11,
                 from /home/rfarahi/math/dolfin-0.7.2/linux-opt/include/dolfin/dolfin_la.h:7,
                 from /home/rfarahi/math/dolfin-0.7.2/linux-opt/include/dolfin.h:9,
                 from psolver.h:6,
                 from poisson_DOLFIN.cpp:8:
/usr/include/boost/numeric/ublas/vector_of_vector.hpp:1203: error: declaration of `class T'
/usr/include/boost/numeric/ublas/vector_of_vector.hpp:32: error:  shadows template parm `class T'
/usr/include/boost/numeric/ublas/vector_of_vector.hpp:1203: error: declaration of `class F'
/usr/include/boost/numeric/ublas/vector_of_vector.hpp:32: error:  shadows template parm `class F'
/usr/include/boost/numeric/ublas/vector_of_vector.hpp:1203: error: declaration of `class A'
/usr/include/boost/numeric/ublas/vector_of_vector.hpp:32: error:  shadows template parm `class A'
/usr/include/boost/numeric/ublas/vector_of_vector.hpp:1208: error: type `boost::numeric::ublas::generalized_vector_of_vector<T, F, A>' is not derived from type `boost::numeric::ublas::generalized_vector_of_vector<T, F, A>'
/usr/include/boost/numeric/ublas/vector_of_vector.hpp:1208: error: ISO C++ forbids initialization of member `zero_'
/usr/include/boost/numeric/ublas/vector_of_vector.hpp:1208: error: making `zero_' static
/usr/include/boost/numeric/ublas/vector_of_vector.hpp:1208: error: template declaration of `const typename boost::numeric::ublas::generalized_vector_of_vector<T, F, A>::value_type boost::numeric::ublas::zero_'
/usr/include/boost/numeric/ublas/vector_of_vector.hpp:1208: confused by earlier errors, bailing out
    mex: compile of 'poisson_DOLFIN.cpp' failed.
??? Error using ==> mex
Unable to complete successfully.
Error in ==> make at 2
mex poisson_DOLFIN.cpp psolver.cpp ...
>> 
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Any suggestion?

Reza


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