dolfin team mailing list archive

[Reza Farrahi Moghaddam <imriss@xxxxxxxxx>]

Hi Johannes,

This is the result. 

[rfarahi@alteran pkgconfiggenerators]$ pwd
/home/rfarahi/math/dolfin-hg/dolfin/scons/simula-scons/simula_scons/pkgconfiggenerators
[rfarahi@alteran pkgconfiggenerators]$ python umfpack.py
** Warning **
pkg-config files may be generated in the directory:
 /home/rfarahi/math/dolfin-hg/dolfin/scons/simula-scons/simula_scons/pkgconfiggenerators.
Consider updating your PKG_CONFIG_PATH variable with this directoy.
Traceback (most recent call last):
  File "umfpack.py", line 323, in <module>
    generatePkgConf(directory=".")
  File "umfpack.py", line 309, in generatePkgConf
    version, libs, cflags = pkgTests(sconsEnv=sconsEnv)
  File "umfpack.py", line 230, in pkgTests
    cflags = pkgCflags(sconsEnv=sconsEnv)
  File "umfpack.py", line 193, in pkgCflags
    cflags = "-I%s" % getUmfpackIncDir(sconsEnv)
  File "umfpack.py", line 142, in getUmfpackIncDir
    return getUmfpackDirs(sconsEnv)[0]
  File "umfpack.py", line 134, in getUmfpackDirs
    filename="umfpack.h", what="includes", package="UMFPACK")
  File "umfpack.py", line 43, in find_dependency_file
    raise UnableToFindPackage(package)
NameError: global name 'UnableToFindPackage' is not defined
[rfarahi@alteran pkgconfiggenerators]$ ls
boost.py                  hypre.py          numpy.py   python.pyc  superlu.py
boost.pyc                 __init__.py       numpy.pyc  scotch.py   trilinos.py
commonPkgConfigUtils.py   __init__.pyc      petsc.py   scotch.pyc  trilinos.pyc
commonPkgConfigUtils.pyc  install_packages  petsc.pyc  slepc.py    umfpack.py
dolfin.py                 numeric.py        python.py  slepc.pyc   umfpack.pyc

Also, here is the list of UMFPACK directory (Include sub-directory):

[rfarahi@alteran Include]$ pwd
/home/rfarahi/math/UMFPACK/Include
[rfarahi@alteran Include]$ ls
umfpack_col_to_triplet.h   umfpack.h                 umfpack_report_perm.h      umfpack_symbolic.h
umfpack_defaults.h         umfpack_load_numeric.h    umfpack_report_status.h    umfpack_tictoc.h
umfpack_free_numeric.h     umfpack_load_symbolic.h   umfpack_report_symbolic.h  umfpack_timer.h
umfpack_free_symbolic.h    umfpack_numeric.h         umfpack_report_triplet.h   umfpack_transpose.h
umfpack_get_determinant.h  umfpack_qsymbolic.h       umfpack_report_vector.h    umfpack_triplet_to_col.h
umfpack_get_lunz.h         umfpack_report_control.h  umfpack_save_numeric.h     umfpack_wsolve.h
umfpack_get_numeric.h      umfpack_report_info.h     umfpack_save_symbolic.h
umfpack_get_symbolic.h     umfpack_report_matrix.h   umfpack_scale.h
umfpack_global.h           umfpack_report_numeric.h  umfpack_solve.h

Thanks,
Reza

----- Original Message ----
From: Johannes Ring <johannr@xxxxxxxxx>
To: Reza Farrahi Moghaddam <imriss@xxxxxxxxx>
Cc: dolfin mailing list <dolfin-dev@xxxxxxxxxx>
Sent: Thursday, April 24, 2008 11:42:09 AM
Subject: Re: [DOLFIN-dev] UMFpack

Hi Reza,

there is a script 'umfpack.py' under the
scons/simula-scons/simula_scons/pkgconfiggenerators/ subfolder. Can you
run that script manually and reply with any error messages?

Johannes

On Thu, April 24, 2008 Reza Farrahi Moghaddam wrote:
> I am using dolfin 0.7.2
>
> I am trying to switch to the latest version (using hg clone ...). My
> system is CentOS 4.4 (final), and I have installed UMFapck and AMD locally
> in the following directories: /home/rfarahi/math/UMFPACK,
> /home/rfarahi/math/AMD and /home/rfarahi/math/UFconfig
>
> But, it seems scons cannot see the umfpack lib. Am I missing something?
>
> I have the same problem with the boost lib.
>
> Here is the log:
> [rfarahi@alteran dolfin]$ pwd
> /home/rfarahi/math/dolfin-hg/dolfin
>
> scons winUmfpackDir=/home/rfarahi/math
> prefix=/home/rfarahi/math/dolfin-hg/linux-opt --help Umfpack=1 install
> withBoostDir=/usr/local/include/boost-1_35
>
>
> scons: Reading SConscript files ...
> Using options from scons/options.cache
> Checking for numpy-1... yes
> Checking for scotch... no (pkg-config file not found)
>  Trying to generate pkg-config file for scotch... failed
> Checking for trilinos... no (pkg-config file not found)
>  Trying to generate pkg-config file for trilinos... failed
> Checking for ufc-1... yes
> Checking for umfpack... no (pkg-config file not found)
>  Trying to generate pkg-config file for umfpack... failed
> Checking for python-2... yes
> Checking for petsc... no (pkg-config file not found)
>  Trying to generate pkg-config file for petsc... failed
> Checking for gts... yes
> Checking for boost... no (pkg-config file not found)
>  Trying to generate pkg-config file for boost... failed
> Checking for slepc... no (pkg-config file not found)
>  Trying to generate pkg-config file for slepc... failed
> Checking for libxml-2.0... yes
> Resolving compiler... done
> Warning: Unknown dependency package: boost
> Enabling compilation of PyDOLFIN
> scons: warning: The env.Copy() method is deprecated; use the env.Clone()
> method instead.
> File "/home/rfarahi/math/dolfin-hg/dolfin/dolfin/SConscript", line 91, in
> <module>
> scons: done reading SConscript files.
> prefix: Installation prefix ( /path/to/prefix )
>    default: /usr/local
>    actual: /home/rfarahi/math/dolfin-hg/linux-opt
> binDir: Binary installation directory ( /path/to/binDir )
>    default: /home/rfarahi/math/dolfin-hg/linux-opt/bin
>    actual: /home/rfarahi/math/dolfin-hg/linux-opt/bin
> libDir: Library installation directory ( /path/to/libDir )
>    default: /home/rfarahi/math/dolfin-hg/linux-opt/lib
>    actual: /home/rfarahi/math/dolfin-hg/linux-opt/lib
> pkgConfDir: Directory for installation of pkg-config files (
> /path/to/pkgConfDir )
>    default: /home/rfarahi/math/dolfin-hg/linux-opt/lib/pkgconfig
>    actual: /home/rfarahi/math/dolfin-hg/linux-opt/lib/pkgconfig
> includeDir: C/C++ header installation directory ( /path/to/includeDir )
>    default: /home/rfarahi/math/dolfin-hg/linux-opt/include
>    actual: /home/rfarahi/math/dolfin-hg/linux-opt/include
> pythonModuleDir: Python module installation directory (
> /path/to/pythonModuleDir )
>    default:
> /home/rfarahi/math/dolfin-hg/linux-opt/lib/python2.5/site-packages
>    actual:
> /home/rfarahi/math/dolfin-hg/linux-opt/lib/python2.5/site-packages
> pythonExtDir: Python extension module installation directory (
> /path/to/pythonExtDir )
>    default:
> /home/rfarahi/math/dolfin-hg/linux-opt/lib/python2.5/site-packages
>    actual:
> /home/rfarahi/math/dolfin-hg/linux-opt/lib/python2.5/site-packages
> enableDebug: Build with debug information (yes|no)
>    default: 1
>    actual: True
> enableDebugUblas: Add some extra Ublas debug information (yes|no)
>    default: 0
>    actual: False
> enableOptimize: Compile with optimization (yes|no)
>    default: 0
>    actual: False
> enableDocs: Build documentation (yes|no)
>    default: 0
>    actual: False
> enableDemos: Build demos (yes|no)
>    default: 0
>    actual: False
> enableTests: Build tests (yes|no)
>    default: 0
>    actual: False
> enableProjectionLibrary: Enable projection library (yes|no)
>    default: 0
>    actual: False
> enableMpi: Compile with support for MPI (yes|no)
>    default: yes
>    actual: True
> enablePetsc: Compile with support for PETSc linear algebra (yes|no)
>    default: yes
>    actual: True
> enableSlepc: Compile with support for SLEPc (yes|no)
>    default: yes
>    actual: True
> enableScotch: Compile with support for SCOTCH graph partitioning (yes|no)
>    default: yes
>    actual: True
> enableGts: Compile with support for GTS (yes|no)
>    default: yes
>    actual: True
> enableUmfpack: Compile with support for UMFPACK (yes|no)
>    default: yes
>    actual: True
> enableTrilinos: Compile with support for Trilinos (yes|no)
>    default: yes
>    actual: True
> enablePydolfin: Compile the python wrappers of Dolfin (yes|no)
>    default: yes
>    actual: True
> withPetscDir: Specify path to PETSc ( /path/to/withPetscDir )
>    default: None
>    actual: None
> withSlepcDir: Specify path to SLEPc ( /path/to/withSlepcDir )
>    default: None
>    actual: None
> withScotchDir: Specify path to SCOTCH ( /path/to/withScotchDir )
>    default: None
>    actual: None
> withUmfpackDir: Specify path to UMFPACK ( /path/to/withUmfpackDir )
>    default: None
>    actual: /home/rfarahi/math
> withTrilinosDir: Specify path to Trilinos ( /path/to/withTrilinosDir )
>    default: None
>    actual: None
> withBoostDir: Specify path to Boost ( /path/to/withBoostDir )
>    default: None
>    actual: /usr/local/include/boost-1_35
> cacheOptions: Cache command-line options for later invocations (yes|no)
>    default: 1
>    actual: True
> veryClean: Remove the sconsign file during clean, must be set during
> regular build (yes|no)
>    default: 0
>    actual: False
> customCxxFlags: Customize compilation of C++ code
>    default:
>    actual:
> SSLOG: Set Simula scons log file
>    default: /home/rfarahi/math/dolfin-hg/dolfin/scons/simula_scons.log
>    actual: /home/rfarahi/math/dolfin-hg/dolfin/scons/simula_scons.log
> Use scons -H for help about command-line options.
>
>
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