dolfin team mailing list archive

["Evan Lezar" <evanlezar@xxxxxxxxx>]

Hi there

I have just tried to build dolfin from source - which completes without
errors, but the building of the demo's fail with the following output:

mpic++ -o demo/fem/assembly/cpp/main.o -c -Wall -pipe -ansi -DDEBUG -g
-Werror -DNDEBUG -O2 -DHAS_MPI=1 -DMPICH_IGNORE_CXX_SEEK
-DPACKAGE_VERSION=\"0.7.3\" -DHAS_PETSC=1 -DHAS_SLEPC=1 -DHAS_UMFPACK=1
-DHAS_GTS=1 -fno-strict-aliasing -I. -I. -Idolfin -I/usr/include/libxml2
-I/home/elezar/src/petsc-2.3.3-p13/bmake/linux-gnu-c-debug
-I/home/elezar/src/petsc-2.3.3-p13/include -I/usr/lib/openmpi/include
-I/usr/lib/openmpi/lib -Idemo -I/home/elezar/src/slepc-2.3.3
-I/home/elezar/src/slepc-2.3.3/include
-I/home/elezar/src/petsc-2.3.3-p13/bmake/linux-gnu-c-debug
-I/home/elezar/src/petsc-2.3.3-p13/include -I/usr/lib/openmpi/include
-I/usr/lib/openmpi/lib -Idemo -I/usr/include/suitesparse
-I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include
demo/fem/assembly/cpp/main.cpp
mpic++ -o demo/fem/assembly/cpp/demo
-Wl,-rpath,/home/elezar/src/petsc-2.3.3-p13/lib/linux-gnu-c-debug
-Wl,-rpath,/home/elezar/src/slepc-2.3.3/lib/linux-gnu-c-debug
-Wl,-rpath,/home/elezar/src/petsc-2.3.3-p13/lib/linux-gnu-c-debug -pthread
-Wl,--export-dynamic demo/fem/assembly/cpp/main.o -Ldolfin
-L/home/elezar/src/petsc-2.3.3-p13/lib/linux-gnu-c-debug
-L/home/elezar/src/slepc-2.3.3/lib/linux-gnu-c-debug
-L/home/elezar/src/petsc-2.3.3-p13/lib/linux-gnu-c-debug -L/usr/lib/atlas
-ldolfin -lxml2 -lpetscts -lpetscsnes -lpetscksp -lpetscdm -lpetscmat
-lpetscvec -lpetsc -lslepc -lpetscts -lpetscsnes -lpetscksp -lpetscdm
-lpetscmat -lpetscvec -lpetsc -lblas -lumfpack -lamd -lgts -lgthread-2.0
-lrt -lgmodule-2.0 -ldl -lglib-2.0
dolfin/libdolfin.so: undefined reference to `dpttrf_'
dolfin/libdolfin.so: undefined reference to `XCreatePixmap'
dolfin/libdolfin.so: undefined reference to `dhseqr_'
dolfin/libdolfin.so: undefined reference to `dpotrf_'
dolfin/libdolfin.so: undefined reference to `XSetForeground'
dolfin/libdolfin.so: undefined reference to `XUndefineCursor'
dolfin/libdolfin.so: undefined reference to `dsyevr_'
dolfin/libdolfin.so: undefined reference to `XGetWMName'
dolfin/libdolfin.so: undefined reference to `dbdsdc_'
dolfin/libdolfin.so: undefined reference to `XCopyArea'
dolfin/libdolfin.so: undefined reference to `dgelqf_'
dolfin/libdolfin.so: undefined reference to `dpotrs_'
dolfin/libdolfin.so: undefined reference to `dstevr_'
dolfin/libdolfin.so: undefined reference to `dggevx_'
dolfin/libdolfin.so: undefined reference to `dsygvd_'
dolfin/libdolfin.so: undefined reference to `dlange_'
dolfin/libdolfin.so: undefined reference to `XCreateGC'
dolfin/libdolfin.so: undefined reference to `XFillRectangle'
dolfin/libdolfin.so: undefined reference to `dgetri_'
dolfin/libdolfin.so: undefined reference to `XCreateFontCursor'
dolfin/libdolfin.so: undefined reference to `XFreeGC'
dolfin/libdolfin.so: undefined reference to `XLookupColor'
dolfin/libdolfin.so: undefined reference to `XSelectInput'
dolfin/libdolfin.so: undefined reference to `XCreateColormap'
dolfin/libdolfin.so: undefined reference to `XChangeGC'
dolfin/libdolfin.so: undefined reference to `XParseColor'
dolfin/libdolfin.so: undefined reference to `dgeev_'
dolfin/libdolfin.so: undefined reference to `dlaev2_'
dolfin/libdolfin.so: undefined reference to `XDrawPoint'
dolfin/libdolfin.so: undefined reference to `XAllocColor'
dolfin/libdolfin.so: undefined reference to `dtrexc_'
dolfin/libdolfin.so: undefined reference to `XListFontsWithInfo'
dolfin/libdolfin.so: undefined reference to `XDrawString'
dolfin/libdolfin.so: undefined reference to `XStringListToTextProperty'
dolfin/libdolfin.so: undefined reference to `dgetrf_'
dolfin/libdolfin.so: undefined reference to `dgehrd_'
dolfin/libdolfin.so: undefined reference to `XMapWindow'
dolfin/libdolfin.so: undefined reference to `XQueryPointer'
dolfin/libdolfin.so: undefined reference to `XSetWMName'
dolfin/libdolfin.so: undefined reference to `XAllocNamedColor'
dolfin/libdolfin.so: undefined reference to `dpttrs_'
dolfin/libdolfin.so: undefined reference to `XMatchVisualInfo'
dolfin/libdolfin.so: undefined reference to `XOpenDisplay'
dolfin/libdolfin.so: undefined reference to `XSetWMProperties'
dolfin/libdolfin.so: undefined reference to `XQueryFont'
dolfin/libdolfin.so: undefined reference to `XFreeFontInfo'
dolfin/libdolfin.so: undefined reference to `XResizeWindow'
dolfin/libdolfin.so: undefined reference to `XGetGeometry'
dolfin/libdolfin.so: undefined reference to `dtrevc_'
dolfin/libdolfin.so: undefined reference to `XSetWindowBackground'
dolfin/libdolfin.so: undefined reference to `dgesvd_'
dolfin/libdolfin.so: undefined reference to `XFlush'
dolfin/libdolfin.so: undefined reference to `XCreateWindow'
dolfin/libdolfin.so: undefined reference to `XFillArc'
dolfin/libdolfin.so: undefined reference to `XSetWindowColormap'
dolfin/libdolfin.so: undefined reference to `XDrawLine'
dolfin/libdolfin.so: undefined reference to `dgetrs_'
dolfin/libdolfin.so: undefined reference to `dstebz_'
dolfin/libdolfin.so: undefined reference to `XMaskEvent'
dolfin/libdolfin.so: undefined reference to `XQueryColor'
dolfin/libdolfin.so: undefined reference to `dstein_'
dolfin/libdolfin.so: undefined reference to `XCheckTypedEvent'
dolfin/libdolfin.so: undefined reference to `XDefineCursor'
dolfin/libdolfin.so: undefined reference to `XSetClipRectangles'
dolfin/libdolfin.so: undefined reference to `XGetWindowAttributes'
dolfin/libdolfin.so: undefined reference to `XStoreColor'
dolfin/libdolfin.so: undefined reference to `dgesdd_'
dolfin/libdolfin.so: undefined reference to `XFillPolygon'
dolfin/libdolfin.so: undefined reference to `dormlq_'
dolfin/libdolfin.so: undefined reference to `XCloseDisplay'
dolfin/libdolfin.so: undefined reference to `XSync'
dolfin/libdolfin.so: undefined reference to `dorghr_'
dolfin/libdolfin.so: undefined reference to `XLoadFont'
dolfin/libdolfin.so: undefined reference to `dlanhs_'
dolfin/libdolfin.so: undefined reference to `dgeevx_'
collect2: ld returned 1 exit status
scons: *** [demo/fem/assembly/cpp/demo] Error 1
scons: building terminated because of errors.


==== end output ====

I it seems that lapack (among others) is not being correctly linked (or at
all).

Any thoughts?
Thanks
Evan