dolfin team mailing list archive
-
dolfin team
-
Mailing list archive
-
Message #08828
Re: [HG DOLFIN] Bug fix in assembly benchmark (don't trust values in previous changeset)
DOLFIN wrote:
One or more new changesets pushed to the primary dolfin repository.
A short summary of the last three changesets is included below.
changeset: 4491:cb0fdfa3514ab65e67b2f922cf482b4f2aa008eb
tag: tip
user: Anders Logg <logg@xxxxxxxxx>
date: Tue Jul 22 23:44:14 2008 +0200
files: bench/fem/assembly/cpp/main.cpp
description:
Bug fix in assembly benchmark (don't trust values in previous changeset)
and add reassembly benchmark. New preliminary results:
Assemble | Poisson2DP1 Poisson2DP2 Poisson2DP3 THStokes2D StabStokes2D Elasticity3D NSEMomentum3D
---------------------------------------------------------------------------------------------------------
uBLAS | 0.45 3.84 3.77 15.1 3.81 8.8 9.13
PETSc | 0.42 3.6 3.56 14.07 3.2 7.6 7.9
Epetra | 0.45 3.76 3.76 14.94 3.72 8.71 9.06
MTL4 | 0.44 3.75 3.75 14.77 3.73 8.75 9.11
Assembly | 0.43 3.78 3.8 14.88 3.36 7.05 7.49
Reassemble | Poisson2DP1 Poisson2DP2 Poisson2DP3 THStokes2D StabStokes2D Elasticity3D NSEMomentum3D
-----------------------------------------------------------------------------------------------------------
uBLAS | 0.2 0.64 0.64 4.37 1.49 4.39 4.74
PETSc | 0.19 0.54 0.55 3.08 1.06 3.24 3.55
Epetra | 0.2 0.65 0.65 4.41 1.5 4.36 4.71
MTL4 | 0.22 0.65 0.64 4.42 1.5 4.38 4.73
Assembly | 0.17 0.53 0.53 2.92 0.89 2.36 2.73
From these results, it looks like the AssemblyMatrix backend is the fastest
but there may be bugs etc.
I'm getting quite different results.
Assemble | Poisson2DP1 Poisson2DP2 Poisson2DP3 THStokes2D
StabStokes2D Elasticity3D NSEMomentum3D
---------------------------------------------------------------------------------------------------------
uBLAS | 0.34 2.94 2.88 11.49
2.86 6.67 6.98
PETSc | 0.31 2.7 2.71 10.24
2.44 5.72 5.94
Epetra | 0.35 2.41 2.39 7.22
2.14 10.88 10.98
MTL4 | 0.2 1.78 1.79 2.97
0.83 1.99 2.32
Assembly | 0.31 2.85 2.89 11.26
2.57 5.46 5.77
Reassemble | Poisson2DP1 Poisson2DP2 Poisson2DP3 THStokes2D
StabStokes2D Elasticity3D NSEMomentum3D
-----------------------------------------------------------------------------------------------------------
uBLAS | 0.14 0.47 0.47 3.22
1.1 3.23 3.46
PETSc | 0.16 0.42 0.42 2.37
0.81 2.46 2.68
Epetra | 0.17 0.43 0.43 2.28
0.82 2.2 2.51
MTL4 | 0.18 0.49 0.48 1.55
0.85 1.73 1.9
Assembly | 0.12 0.43 0.42 2.32
0.68 1.82 2.1
MTL4 is the fastest, which is due in large part to the fact the
MTL4SparsityPattern doesn't do anything. Once we get the sparsity
pattern sorted out, I expect PETSc to be very close to MTL4.
I don't think that AssemblyMatrix is particularly interesting other than
for curiosity because it's not good for linear algebra.
For Stokes + Taylor-Hood, most of the time is in the generation of the
sparsity pattern. I tested PETSc and MTL4 earlier today for Taylor-Hood
by not generating the vector-of-a-set in SparsityPattern and just
prescribing the maximum number of non-zeroes per row. The assembly was
much faster, and the difference between PETSc and MTL4 was very small.
I also made a modification of SparsityPattern to work with a 'homemade'
unsorted set using a vector of vectors. It's a lot faster than using
std::set in SparsityPattern and can return the number of non-zeroes per
row. However, it isn't ordered for each row so it's not very useful for
initialising sparse uBLAS matrices by filling the matrix in order. What
I'll do is implement it, so PETSc and MTL4, and probably Epetra, will be
considerably faster. For uBLAS, I'll revert to the old strategy of
assembling into a fast to assemble matrix and converting that to
compressed row when apply() is called.
Garth
changeset: 4490:2671a65ec6435c8fcfd421aa41290f9dd3989e59
user: Anders Logg <logg@xxxxxxxxx>
date: Tue Jul 22 22:54:31 2008 +0200
files: bench/fem/assembly/Elasticity3D.form bench/fem/assembly/NSEMomentum3D.form bench/fem/assembly/PoissonP1.form bench/fem/assembly/PoissonP2.form bench/fem/assembly/PoissonP3.form bench/fem/assembly/StabStokes2D.form bench/fem/assembly/THStokes2D.form bench/fem/assembly/bench.py bench/fem/assembly/cpp/SConstruct bench/fem/assembly/cpp/forms.h bench/fem/assembly/cpp/forms/Elasticity3D.form bench/fem/assembly/cpp/forms/Elasticity3D.h bench/fem/assembly/cpp/forms/NSEMomentum3D.form bench/fem/assembly/cpp/forms/NSEMomentum3D.h bench/fem/assembly/cpp/forms/Poisson2DP1.form bench/fem/assembly/cpp/forms/Poisson2DP1.h bench/fem/assembly/cpp/forms/Poisson2DP2.form bench/fem/assembly/cpp/forms/Poisson2DP2.h bench/fem/assembly/cpp/forms/Poisson2DP3.form bench/fem/assembly/cpp/forms/Poisson2DP3.h bench/fem/assembly/cpp/forms/StabStokes2D.form bench/fem/assembly/cpp/forms/StabStokes2D.h bench/fem/assembly/cpp/forms/THStokes2D.form bench/fem/assembly/cpp/forms/THStokes2D.h benc
h/fem/assembly/cpp/main.cpp bench/fem/assembly/python/bench.py dolfin/common/Timer.h dolfin/log/Logger.cpp dolfin/log/Logger.h dolfin/log/log.cpp dolfin/log/log.h dolfin/swig/dolfin_docstrings.i site-packages/dolfin/logger.py
description:
First version of assembly benchmark in C++ (based on previous versions).
Python version currently broken (will fix). Preliminary results:
Assembly benchmark | Poisson2DP1 Poisson2DP2 Poisson2DP3 THStokes2D StabStokes2D Elasticity3D NSEMomentum3D
-------------------------------------------------------------------------------------------------------------------
uBLAS | 0.33 3.13 3.06 9.71 2.19 4.46 4.78
PETSc | 0.3 3.08 3.05 9.46 2.19 4.44 4.77
Epetra | 0.32 3.06 3.06 9.46 2.17 4.43 4.78
MTL4 | 0.31 3.07 3.06 9.47 2.19 4.44 4.77
Assembly | 0.31 3.07 3.06 9.48 2.18 4.44 4.78
changeset: 4489:d5438d5945af61acb9e97fa57a71947f4a999372
user: Anders Logg <logg@xxxxxxxxx>
date: Tue Jul 22 22:09:37 2008 +0200
files: dolfin/fem/Assembler.cpp dolfin/fem/Assembler.h dolfin/fem/assemble.cpp dolfin/fem/assemble.h
description:
Add parameter reset_tensor=true to all assemble functions
----------------------------------------------------------------------
For more details, visit http://www.fenics.org/hg/dolfin
_______________________________________________
DOLFIN-dev mailing list
DOLFIN-dev@xxxxxxxxxx
http://www.fenics.org/mailman/listinfo/dolfin-dev
Follow ups
References
