dolfin team mailing list archive

[Shawn Walker <walker@xxxxxxxxxxxxxxx>]

I am using the gcc compiler in cygwin.  It seemed to work for install blas 
and umfpack.  I also still have this error in finding umfpack.  Maybe 
there is a config file in SuiteSparse that must be set.

- Shawn

On Mon, 4 Aug 2008, Garth N. Wells wrote:

> Shawn Walker wrote:
> > Deleting the -ansi seemed to help, but now I get the following error:
> >
> > ----------------------------------------
> > $ scons withBoostDir=$BOOST_DIR withUmfpackDir=$UMFPACK_DIR enableDemos=1 
> > enableScotch=no enableTrilinos=no enableMpi=no enablePetsc=no 
> > enableSlepc=no
> >
> > scons: Reading SConscript files ...
> > Using options from scons/options.cache
> > Checking for pkg-config... yes
> > Checking for numpy-1... yes
> > Checking for ufc-1... yes
> > Checking for umfpack... no (pkg-config file not found)
> >  Trying to generate pkg-config file for umfpack... failed
> > Checking for python-2... yes
> > Checking for gts... yes
> >
> > ............etc.................
> >
> > c++ -o dolfin/la/AssemblyFactory.os -c -Wall -pipe -DDEBUG -g -Werror 
> > -DNDEBUG -O2 -DPACKAGE_VERSION=\"0.8.0\" -DHAS_GTS=1 -I. 
> > -I/download/src/boost_1_35_0 -I/usr/include/libxml2 -I/build/include 
> > -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include 
> > dolfin/la/AssemblyFactory.cpp
> > c++ -o dolfin/la/AssemblyMatrix.os -c -Wall -pipe -DDEBUG -g -Werror 
> > -DNDEBUG -O2 -DPACKAGE_VERSION=\"0.8.0\" -DHAS_GTS=1 -I. 
> > -I/download/src/boost_1_35_0 -I/usr/include/libxml2 -I/build/include 
> > -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include 
> > dolfin/la/AssemblyMatrix.cpp
> > /usr/lib/gcc/i686-pc-cygwin/3.4.4/include/c++/bits/stl_uninitialized.h: In 
> > member function `void std::vector<_Tp, 
> > _Alloc>::_M_fill_insert(__gnu_cxx::__normal_iterator<typename 
> > _Alloc::pointer, std::vector<_Tp, _Alloc> >, size_t, const _Tp&) [with _Tp 
> > = std::map<dolfin::uint, dolfin::real, std::less<dolfin::uint>, 
> > std::allocator<std::pair<const dolfin::uint, dolfin::real> > >, _Alloc = 
> > std::allocator<std::map<dolfin::uint, dolfin::real, 
> > std::less<dolfin::uint>, std::allocator<std::pair<const dolfin::uint, 
> > dolfin::real> > > >]':
> > /usr/lib/gcc/i686-pc-cygwin/3.4.4/include/c++/bits/stl_uninitialized.h:82: 
> > warning: '__cur' might be used uninitialized in this function
> > /usr/lib/gcc/i686-pc-cygwin/3.4.4/include/c++/bits/stl_uninitialized.h:82: 
> > warning: '__cur' might be used uninitialized in this function
> > scons: *** [dolfin/la/AssemblyMatrix.os] Error 1
> > scons: building terminated because of errors.
> > ---------------------------------------------------------
> > If there were no errors, run
> >
> >     scons install
> >
> > ..........etc.....
> > ---------------------------------------------------
> >
> > the only 'error' I see is that warning.  And I didn't see any error in the 
> > compile log that I did NOT display here.  Any suggestions?
>
> Looks like a Cygwin STL issue. Which compiler are you using?
>
> Try building DOLFIN with enableDebug=no
>
> Garth
>
> > - Shawn
> >
> > On Mon, 4 Aug 2008, Garth N. Wells wrote:
> >
> > > For the 'vsnprintf' problem, open the SConstruct and delete '-ansi' 
> > > wherever you find it. Let me know if it works. I used to test periodically 
> > > under Cygwin, but haven't for a long time because now I just run a virtual 
> > > machine (using VirtualBox) if I'm using Windows because it's much faster 
> > > than Cygwin.
> > >
> > > What we should do is eliminate c-style io functions and use C++ functions 
> > > exclusively.
> > >
> > > As for UMFPACK, try
> > >
> > >  withUmfpackDir=/download/src/SuiteSparse/
> > >
> > > Garth
> > >
> > >
> > >
> > > Shawn Walker wrote:
> > > > Hello all.  I ALMOST have dolfin compiling.  I have the other necessary 
> > > > packages put in, but I still have two errors in the compilation of 
> > > > Dolfin. note: I am using Cygwin on windows XP.  And I am using the most 
> > > > current dolfin version.
> > > >
> > > > here is the error I get:
> > > >
> > > > ---------------------------------------------------------
> > > > $ scons 
> > > > libDir=/download/src/SuiteSparse/UMFPACK/Lib:/download/src/SuiteSparse/UFconfig:/download/src/SuiteSparse/AMD/Lib 
> > > > withBoostDir=$BOOST_DIR withUmfpackDir=$UMFPACK_DIR enableDemos=1 
> > > > enableScotch=no enableTrilinos=no enableMpi=no enablePetsc=no 
> > > > enableSlepc=no
> > > >
> > > > scons: Reading SConscript files ...
> > > > Using options from scons/options.cache
> > > > Checking for pkg-config... yes
> > > > Checking for numpy-1... yes
> > > > Checking for ufc-1... yes
> > > > Checking for umfpack... no (pkg-config file not found)
> > > >   Trying to generate pkg-config file for umfpack... failed
> > > > Checking for python-2... yes
> > > > Checking for gts... yes
> > > > Checking for boost... yes
> > > > Checking for libxml-2.0... yes
> > > > Resolving compiler... done
> > > > Found optional package: gts
> > > > Unable to find optional package: petsc
> > > > Unable to find optional package: slepc
> > > > Unable to find optional package: scotch
> > > > Unable to find optional package: umfpack
> > > > Unable to find optional package: trilinos
> > > > Enabling compilation of PyDOLFIN
> > > >
> > > > scons: warning: The env.Copy() method is deprecated; use the env.Clone() 
> > > > method instead.
> > > > File "/download/src/fenics/dolfin/dolfin/SConscript", line 107, in 
> > > > <module>
> > > > scons: done reading SConscript files.
> > > > scons: Building targets ...
> > > > c++ -o dolfin/io/XMLFile.os -c -Wall -pipe -ansi -DDEBUG -g -Werror 
> > > > -DNDEBUG -O2 -DPACKAGE_VERSION=\"0.8.0\" -DHAS_GTS=1 -I. -I/build/include 
> > > > -I/download/src/boost_1_35_0 -I/usr/include/libxml2 -I/build/include 
> > > > -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include dolfin/io/XMLFile.cpp
> > > > dolfin/io/XMLFile.cpp: In function `void dolfin::sax_warning(void*, const 
> > > > char*, ...)':
> > > > dolfin/io/XMLFile.cpp:678: error: `vsnprintf' undeclared (first use this 
> > > > function)
> > > > dolfin/io/XMLFile.cpp:678: error: (Each undeclared identifier is reported 
> > > > only once for each function it appears in.)
> > > > dolfin/io/XMLFile.cpp: In function `void dolfin::sax_error(void*, const 
> > > > char*, ...)':
> > > > dolfin/io/XMLFile.cpp:688: error: `vsnprintf' undeclared (first use this 
> > > > function)
> > > > dolfin/io/XMLFile.cpp: In function `void dolfin::sax_fatal_error(void*, 
> > > > const char*, ...)':
> > > > dolfin/io/XMLFile.cpp:698: error: `vsnprintf' undeclared (first use this 
> > > > function)
> > > > scons: *** [dolfin/io/XMLFile.os] Error 1
> > > > scons: building terminated because of errors.
> > > > ---------------------------------------------------------
> > > >
> > > > There are two errors.  It cannot find umfpack, even though I specify the 
> > > > directory, and where the lib is.  The second has to do with a file being 
> > > > compiled at the end.  Please help?
> > > >
> > > > - Shawn
> > > > _______________________________________________
> > > > DOLFIN-dev mailing list
> > > > DOLFIN-dev@xxxxxxxxxx
> > > > http://www.fenics.org/mailman/listinfo/dolfin-dev