dolfin team mailing list archive

[Shawn Walker <walker@xxxxxxxxxxxxxxx>]

Hello.  This just started.  When I run:

walker@box227 ~/FENICS/dolfin
$ scons configure prefix=$INSTALL_PATH withBoostDir=$BOOST_DIR 
withUmfpackDir=$UMFPACK_DIR withPetscDir=$PETSC_DIR 
withSlepcDir=$SLEPC_DIR enableDemos=yes enableScotch=no enableTrilinos=no 
enableMpi=no enablePetsc=yes enableSlepc=yes enableUmfpack=yes 
enableParmetis=no enableMtl4=no enableDebug=yes enablePython=no

I get the following output.  Note the PETSC error:

scons: Reading SConscript files ...
Using options from /home/walker/FENICS/dolfin/scons/options.cache
Checking for pkg-config... yes
Checking for boost_filesystem... yes
Checking for numpy-1... yes
Checking for slepc... yes
 Trying to re-generate pkg-config file for slepc... done
 Found SLEPc and generated pkg-config file in
 '/home/walker/FENICS/dolfin/scons/pkgconfig'
Checking for ufc-1... yes
Checking for umfpack... yes
 Trying to re-generate pkg-config file for umfpack... done
 Found UMFPACK and generated pkg-config file in
 '/home/walker/FENICS/dolfin/scons/pkgconfig'
Checking for python-2... yes
Checking for petsc... yes
sh: -c: line 0: unexpected EOF while looking for matching ``'
sh: -c: line 3: syntax error: unexpected end of file
 Trying to re-generate pkg-config file for petsc... Does not know about 
any alternates for mpicxx
make: warning:  Clock skew detected.  Your build may be incomplete., so 
that is used
sh: -c: line 0: unexpected EOF while looking for matching ``'
sh: -c: line 3: syntax error: unexpected end of file
Does not know about any alternates for mpicxx
make: warning:  Clock skew detected.  Your build may be incomplete., so 
that is used
sh: -c: line 2: unexpected EOF while looking for matching `''
sh: -c: line 5: syntax error: unexpected end of file
failed
Checking for boost_program_options... yes
Checking for gts... yes
Checking for cholmod... yes
Checking for boost... yes
 Trying to re-generate pkg-config file for boost... done
 Found Boost and generated pkg-config file in
 '/home/walker/FENICS/dolfin/scons/pkgconfig'
Checking for libxml-2.0... yes
sh: -c: line 0: unexpected EOF while looking for matching ``'
sh: -c: line 3: syntax error: unexpected end of file
Resolving compiler... done
Found optional package: umfpack
Found optional package: gts
Found optional package: cholmod
Unable to find optional package: petsc
Unable to find optional package: slepc
Disabling compilation of Python wrappers
---------------------------------------------------------

I have changed nothing with PETSC and SLEPC; this just started.  Any ideas 
what is happening?

- Shawn