I tried enabling and disabling MPI when configuring DOLFIN. I still get an
error:
$ scons configure prefix=$INSTALL_PATH withBoostDir=$BOOST_DIR
withUmfpackDir=$UMFPACK_DIR withPetscDir=$PETSC_DIR withSlepcDir=$SLEPC_DIR
enableDemos=yes enableScotch=no enableTrilinos=no enableMpi=yes
enablePetsc=yes enableSlepc=yes enableUmfpack=yes enableParmetis=no
enableMtl4=no enableDebug=yes enablePython=yes
scons: Reading SConscript files ...
Using options from /home/walker/FENICS/dolfin/scons/options.cache
Checking for pkg-config... yes
Checking for boost_filesystem... yes
Checking for numpy-1... yes
Checking for slepc... yes
sh: -c: line 0: unexpected EOF while looking for matching ``'
sh: -c: line 3: syntax error: unexpected end of file
Trying to re-generate pkg-config file for slepc... failed
Checking for ufc-1... yes
Checking for umfpack... yes
Trying to re-generate pkg-config file for umfpack... done
Found UMFPACK and generated pkg-config file in
'/home/walker/FENICS/dolfin/scons/pkgconfig'
Checking for python-2... yes
Checking for petsc... yes
sh: -c: line 0: unexpected EOF while looking for matching ``'
sh: -c: line 3: syntax error: unexpected end of file
Trying to re-generate pkg-config file for petsc... Does not know about
any alternates for mpicxx
make: warning: Clock skew detected. Your build may be incomplete., so
that is used
sh: -c: line 0: unexpected EOF while looking for matching ``'
sh: -c: line 3: syntax error: unexpected end of file
Does not know about any alternates for mpicxx
make: warning: Clock skew detected. Your build may be incomplete., so
that is used
sh: -c: line 2: unexpected EOF while looking for matching `''
sh: -c: line 5: syntax error: unexpected end of file
failed
Checking for boost_program_options... yes
Checking for gts... yes
Checking for cholmod... yes
Checking for boost... yes
Trying to re-generate pkg-config file for boost... done
Found Boost and generated pkg-config file in
'/home/walker/FENICS/dolfin/scons/pkgconfig'
Checking for libxml-2.0... yes
Resolving compiler... done
Found optional package: umfpack
Found optional package: gts
Found optional package: cholmod
Unable to find optional package: petsc
Unable to find optional package: slepc
Enabling compilation of Python wrappers
---------------------------------------------------------
I have no idea what to do.
- Shawn
On Tue, 14 Jul 2009, Johannes Ring wrote:
On Tue, July 14, 2009 15:02, Shawn Walker wrote:
Do I need to install the newest PETSC and SLEPC? I'm running 2.3.3 right
now. Was there a change recently where this matters?
Both PETSc 2.3.3 and 3.0.0 are supported. I see in one of your other posts
that you set enableMpi=no during configure. This will not work if PETSc is
built with MPI. Try to enable MPI or rebuild PETSc without MPI.
Johannes
- Shawn
On Tue, 14 Jul 2009, Johannes Ring wrote:
Hi Shawn,
I have never seen this error before but some googling suggests that
there
is something wrong with your time, however, it shouldn't be a problem.
I'm not sure why it fails to generate a pkg-config file for PETSc but it
might be that you need to set PETSC_ARCH before running "scons
configure".
Try that and look in scons/simula_scons.log in case of any failures.
Johannes
On Mon, July 13, 2009 15:33, Shawn Walker wrote:
Does anyone know what this error is when I run "scons configure" for
DOLFIN:
Checking for petsc... yes
sh: -c: line 0: unexpected EOF while looking for matching ``'
sh: -c: line 3: syntax error: unexpected end of file
Trying to re-generate pkg-config file for petsc... Does not know
about
any alternates for mpicxx
make: warning: Clock skew detected. Your build may be incomplete., so
that is used
sh: -c: line 0: unexpected EOF while looking for matching ``'
sh: -c: line 3: syntax error: unexpected end of file
Does not know about any alternates for mpicxx
make: warning: Clock skew detected. Your build may be incomplete., so
that is used
sh: -c: line 2: unexpected EOF while looking for matching `''
sh: -c: line 5: syntax error: unexpected end of file
failed
=================================
I tried erasing the DOLFIN dir and re-cloning it and I still get that
error.
- Shawn
_______________________________________________
DOLFIN-dev mailing list
DOLFIN-dev@xxxxxxxxxx
http://www.fenics.org/mailman/listinfo/dolfin-dev
_______________________________________________
DOLFIN-dev mailing list
DOLFIN-dev@xxxxxxxxxx
http://www.fenics.org/mailman/listinfo/dolfin-dev