dolfin team mailing list archive

["Garth N. Wells" <gnw20@xxxxxxxxx>]

Anders Logg wrote:
> On Tue, Aug 18, 2009 at 01:54:24PM +0100, Garth N. Wells wrote:
> > Johan Hake wrote:
> > > On Monday 17 August 2009 19:19:40 Anders Logg wrote:
> > > > On Mon, Aug 17, 2009 at 07:09:11PM +0200, DOLFIN wrote:
> > > > > changeset:   6762:ca407204632a1b0430099c243c915a151b2bd941
> > > > > parent:      6759:efc24a341e41e9e0c83616be4613d819fe95ccb6
> > > > > user:        Anders Logg <logg@xxxxxxxxx>
> > > > > date:        Mon Aug 17 19:08:56 2009 +0200
> > > > > files:       site-packages/dolfin/compile_function.py
> > > > > site-packages/dolfin/jit.py description:
> > > > > Make JIT compiler work in parallel. The process number is added to the
> > > > > signature to create a unique signature for each process. This means that
> > > > > each process will compile its own form. This may not be optimal and could
> > > > > possibly be handled by Instant. On the other hand, it seems to work
> > > > > nicely and might also be advantageous when processes don't share a common
> > > > > cache.
> > > > The Poisson Python demo now runs as is without the need for first
> > > > running it in serial (to handle JIT compilation):
> > > Did it not work before this change? I know Martin added some file locks to
> > > prevent simultaneous compilations of the same module.
> > >
> > > >   mpirun -n 4 python demo.py
> > > Do I have to set some environmental variables to make this work. I can't get
> > > it to work (probably some stupid error) :P
> > >
> > > Johan
> > >
> > > When running the above command I get:
> > >
> > > ssh: connect to host hake-laptop port 22: Connection refused
> > This looks like a known bug in the Ubuntu MPI package
> >
> >    http://www.open-mpi.org/community/lists/users/2009/03/8571.php
> >    https://bugs.launchpad.net/ubuntu/+source/openmpi/+bug/365122
> >
> > Garth
>
> I use the standard Ubuntu (Karmic) OpenMPI package 

This is a newer version of OpenMPI which has been fixed.

Garth

and I can just run
> without setting any variables.
>
> --
> Anders
>
>
> > > --------------------------------------------------------------------------
> > > A daemon (pid 32065) died unexpectedly with status 255 while attempting
> > > to launch so we are aborting.
> > >
> > > There may be more information reported by the environment (see above).
> > >
> > > This may be because the daemon was unable to find all the needed shared
> > > libraries on the remote node. You may set your LD_LIBRARY_PATH to have the
> > > location of the shared libraries on the remote nodes and this will
> > > automatically be forwarded to the remote nodes.
> > > --------------------------------------------------------------------------
> > > --------------------------------------------------------------------------
> > > mpirun noticed that the job aborted, but has no info as to the process
> > > that caused that situation.
> > > --------------------------------------------------------------------------
> > > mpirun: clean termination accomplished
> > >
> > >
> > >
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