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On Tuesday 15 September 2009 20:33:08 Johannes Ring wrote: > On Tue, Sep 15, 2009 at 7:19 PM, Anders Logg <logg@xxxxxxxxx> wrote: > > The buildbot is currently failing on > > > > demo/pde/poisson1D/python > > > > when running in serial. I can't find the output from running the demo > > so it' difficult to know what goes wrong. > > The problem is that the buildslaves times out and the output is > thereby lost. I logged into the buildslaves now and the only contents > in demo.log was this: > > --------------------------------------------------------------------- > ./../../demo/parameters/python (Python) > > Reading DOLFIN parameters from file "parameters.xml". > Traceback (most recent call last): > File "./demo.py", line 22, in <module> > info(parameters, True) > File "/opt/fenics/lib/python2.6/site-packages/dolfin/cpp.py", line > 1169, in info > _info(args[0].str(*args[1:])) > File "/opt/fenics/lib/python2.6/site-packages/dolfin/cpp.py", line > 534, in __getitem__ > raise KeyError, "'%s'"%key > KeyError: "'str'" This should be fixed. What build slave does the python parameter demo fail on? johan > I tried to run demo/pde/poisson1D/python and it hangs with this error > (complete output is listed below): > > NameError: global name 'facet_normal_1D' is not defined > > > Then a number of the parallel demos are failing, most likely due to > > MUMPS (parallel direct solver) missing on the build slave. > > Is MUMPS a dependency? Or do we require PETSc to be built with MUMPS > now? I thought it was only optional. > > Johannes > > fenics-slave@byggmester:python$ mpirun -n 2 python demo.py > Process 0: Debug: creating local mesh data [at > dolfin/mesh/MeshPartitioning.cpp:62 in partition()] > Process 0: Number of global vertices: 51 > Process 0: Number of global cells: 50 > Process 0: Debug: check [at dolfin/mesh/LocalMeshData.cpp:158 in > broadcast_mesh_data()] > Process 0: Debug: check [at dolfin/mesh/LocalMeshData.cpp:172 in > broadcast_mesh_data()] > Process 0: Sending 26 vertices to process 0, range is (0, 26) > Process 0: Sending 25 vertices to process 1, range is (26, 51) > Process 0: Received 26 vertex coordinates > Process 0: Debug: check [at dolfin/mesh/LocalMeshData.cpp:191 in > broadcast_mesh_data()] > Process 0: Received 26 vertex indices > Process 0: Debug: check [at dolfin/mesh/LocalMeshData.cpp:205 in > broadcast_mesh_data()] > Process 0: Sending 25 cells to process 0, range is (0, 25) > Process 0: Sending 25 cells to process 1, range is (25, 50) > Process 0: Received 25 cell vertices > Process 0: Debug: created local mesh data [at > dolfin/mesh/MeshPartitioning.cpp:64 in partition()] > Process 1: Debug: creating local mesh data [at > dolfin/mesh/MeshPartitioning.cpp:62 in partition()] > Process 1: Debug: check [at dolfin/mesh/LocalMeshData.cpp:228 in > receive_mesh_data()] > Process 1: Debug: check [at dolfin/mesh/LocalMeshData.cpp:240 in > receive_mesh_data()] > Process 1: Received 25 vertex coordinates > Process 1: Debug: check [at dolfin/mesh/LocalMeshData.cpp:248 in > receive_mesh_data()] > Process 1: Received 25 vertex indices > Process 1: Debug: check [at dolfin/mesh/LocalMeshData.cpp:256 in > receive_mesh_data()] > Process 1: Received 25 cell vertices > Process 1: Debug: created local mesh data [at > dolfin/mesh/MeshPartitioning.cpp:64 in partition()] > Process 0: Partitioned mesh, edge cut is 1. > Process 1: Partitioned mesh, edge cut is 1. > Process 0: Building parallel dof map > Process 1: Building parallel dof map > Process 0: Finished building parallel dof map > Process 1: Finished building parallel dof map > Process 0: Building parallel dof map > Process 1: Building parallel dof map > Process 0: Finished building parallel dof map > Process 1: Finished building parallel dof map > Process 0: Calling FFC just-in-time (JIT) compiler, this may take some > time. Traceback (most recent call last): > File "demo.py", line 45, in <module> > problem = VariationalProblem(a, L, bc) > File > "/opt/fenics/lib/python2.6/site-packages/dolfin/variationalproblem.py", > line 31, in __init__ > self.L = Form(L) > File "/opt/fenics/lib/python2.6/site-packages/dolfin/form.py", line > 34, in __init__ > (self._compiled_form, module, self.form_data) = jit(form, options) > File "/opt/fenics/lib/python2.6/site-packages/dolfin/jit.py", line > 48, in mpi_jit > output = local_jit(*args, **kwargs) > File "/opt/fenics/lib/python2.6/site-packages/dolfin/jit.py", line 105, > in jit return jit_compile(form, options) > File "/opt/fenics/lib/python2.6/site-packages/ffc/jit/jit.py", line 58, > in jit return jit_form(object, options) > File "/opt/fenics/lib/python2.6/site-packages/ffc/jit/jit.py", line > 86, in jit_form > compile(form, signature, options) > File "/opt/fenics/lib/python2.6/site-packages/ffc/compiler/compiler.py", > line 90, in compile > form_code = generate_form_code(form_data, representations, prefix, > format.format, options) > File "/opt/fenics/lib/python2.6/site-packages/ffc/compiler/compiler.py", > line 177, in generate_form_code > codes.append(code_generator.generate_integrals(representations[i], > format)) File > "/opt/fenics/lib/python2.6/site-packages/ffc/compiler/quadrature/quadratur > egenerator.py", line 77, in generate_integrals > code.update(self.generate_exterior_facet_integrals(form_representation, > format)) > File > "/opt/fenics/lib/python2.6/site-packages/ffc/compiler/quadrature/quadratur > egenerator.py", line 123, in generate_exterior_facet_integrals > self.generate_exterior_facet_integral(form_representation, > transformer, integrals, format) > File > "/opt/fenics/lib/python2.6/site-packages/ffc/compiler/quadrature/quadratur > egenerator.py", line 226, in generate_exterior_facet_integral > jacobi_code += [format["generate normal"](transformer.geo_dim, > "exterior facet")] > File "/opt/fenics/lib/python2.6/site-packages/ffc/compiler/ufcformat.py", > line 211, in <lambda> > "generate normal": lambda d, i: _generate_normal(d, i), > File "/opt/fenics/lib/python2.6/site-packages/ffc/compiler/ufcformat.py", > line 712, in _generate_normal > facet_normal = facet_normal_1D > NameError: global name 'facet_normal_1D' is not defined > _______________________________________________ > DOLFIN-dev mailing list > DOLFIN-dev@xxxxxxxxxx > http://www.fenics.org/mailman/listinfo/dolfin-dev >
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