dolfin team mailing list archive

[Anders Logg <logg@xxxxxxxxx>]

On Tue, Feb 16, 2010 at 03:19:28PM +0100, Johannes Ring wrote:
> On Tue, Feb 16, 2010 at 3:06 PM, Anders Logg <logg@xxxxxxxxx> wrote:
> > On Tue, Feb 16, 2010 at 01:32:35PM +0100, Johannes Ring wrote:
> >> On Fri, Feb 12, 2010 at 2:28 PM, Johannes Ring <johannr@xxxxxxxxx> wrote:
> >> > Hi,
> >> >
> >> > The buildbot linux64-exp now fails with the following error:
> >> >
> >> > mpic++ -o dolfin/graph/ParMETIS.os -c -Wall -pipe -ansi
> >> > -BOOST_UBLAS_NDEBUG -DDEBUG -g -O2 -Werror -DHAS_MPI=1
> >> > -DMPICH_IGNORE_CXX_SEEK -DPACKAGE_VERSION=\"0.9.6\" -DHAS_LAPACK=1
> >> > -DHAS_ZLIB=1 -DHAS_UMFPACK=1 -DHAS_MTL4=1 -DHAS_CHOLMOD=1
> >> > -DHAS_SCOTCH=1 -DHAS_PARMETIS=1 -fno-strict-aliasing -fPIC -I.
> >> > -I/work/jhbuildbot/fenics/include -I/usr/include -I/usr/include
> >> > -I/usr/include -I/usr/include/libxml2 -I/usr/include
> >> > -I/usr/include/suitesparse -I/work/jhbuildbot/src/mtl4 -I/usr/include
> >> > -I/usr/include/suitesparse -I/work/jhbuildbot/src/scotch_5.1/include
> >> > -I/usr/include dolfin/graph/ParMETIS.cpp
> >> > dolfin/graph/ParMETIS.cpp: In static member function 'static void
> >> > dolfin::ParMETIS::compute_partition(std::vector<unsigned int,
> >> > std::allocator<unsigned int> >&, const dolfin::LocalMeshData&)':
> >> > dolfin/graph/ParMETIS.cpp:100: error: 'ParMETIS_V3_PartMeshKway' was
> >> > not declared in this scope
> >> > scons: *** [dolfin/graph/ParMETIS.os] Error 1
> >> > scons: building terminated because of errors.
> >> > dolfin/graph/ParMETIS.os failed: Error 1
> >> >
> >> > This happened after I built the PT-SCOTCH libraries. Any ideas?
> >>
> >> The same error is now reported by the jaunty-amd64 slave:
> >>
> >> http://fenics.org:8080/builders/dolfin-jaunty-amd64/builds/244/steps/dolfin%20build/logs/stdio
> >
> > Can you check parmetis.h on the buildbot if ParMETIS_V3_PartMeshKway
> > is defined? The build includes -DHAS_PARMETIS=1 so it should be there.
>
> Yes, it is defined in /usr/include/parmetis.h but I see that SCOTCH
> also comes with a parmetis.h file and ParMETIS_V3_PartMeshKway is not
> defined there. I guess that this parmetis.h is used instead since it
> is in SCOTCH_DIR/include.

Is parmetis.h installed in $prefix/include? Or is it in $prefix/scotch/include?

In the first case, it's completely crazy.

In the second case, we need to update the build system/pkgconfig-generator not to
add $prefix/scotch/include and add the scotch prefix when including ptscotch.h.

--
Anders

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