dolfin team mailing list archive

[Johan Hake <johan.hake@xxxxxxxxx>]

On Friday August 20 2010 13:58:18 Garth N. Wells wrote:
> On Aug 20 2010, Anders Logg wrote:
> >On Fri, Aug 20, 2010 at 08:29:44PM +0100, Garth N. Wells wrote:
> >> On Fri, 2010-08-20 at 21:05 +0200, Anders Logg wrote:
> >> > On Fri, Aug 20, 2010 at 11:01:40AM -0700, Johan Hake wrote:
> >> > > On Friday August 20 2010 03:10:27 Anders Logg wrote:
> >> > > > On Fri, Aug 20, 2010 at 11:03:21AM +0100, Garth N. Wells wrote:
> >> > > > > On Fri, 2010-08-20 at 11:56 +0200, Anders Logg wrote:
> >> > > > > > On Fri, Aug 20, 2010 at 10:54:04AM +0100, Garth N. Wells wrote:
> >> > > > > > > I'm running into a Python error (below), which I suspect is
> >> > > > > > > due to the relocation of the UFC Python module (now in its
> >> > > > > > > own subdirectory). Do I need to add
> >> > > > > > > 
> >> > > > > > >     from ufc import *
> >> > > > > > > 
> >> > > > > > > somewhere?
> >> > > > > > > 
> >> > > > > > > Garth
> >> > > > > > > 
> >> > > > > > > Traceback (most recent call last):
> >> > > > > > >   File "demo.py", line 20, in <module>
> >> > > > > > >   
> >> > > > > > >     from dolfin import *
> >> > > > > > >   
> >> > > > > > >   File
> >> > > > > > > 
> >> > > > > > > "/home/garth/Work/FEniCS/lib/python2.6/site-packages/dolfin/
> >> > > > > > > __init__. py", line 13, in <module>
> >> > > > > > > 
> >> > > > > > >     import dolfin.cpp as cpp
> >> > > > > > >   
> >> > > > > > >   File
> >> > > > > > > 
> >> > > > > > > "/home/garth/Work/FEniCS/lib/python2.6/site-packages/dolfin/
> >> > > > > > > cpp.py", line 8902, in <module>
> >> > > > > > > 
> >> > > > > > >     class GenericFunction(ufc.function,Variable):
> >> > > > > > > AttributeError: 'module' object has no attribute 'function'
> >> > > > > > 
> >> > > > > > Looks like a missing __init__.py in the ufc directory, but I
> >> > > > > > thought that was added?
> >> > > > > 
> >> > > > > It's present on my machine.
> >> > > > > 
> >> > > > > 
> >> > > > > Make sure that you clean out any pkg-config and old versions
> >> > > > > for UFC.
> >> > > > 
> >> > > > It's all installed in one directory which I just delete before
> >> > > > testing.
> >> > > 
> >> > > You also need to get rid of old ufc.py{c} and _ufc.so sticking
> >> > > around.
> >> > 
> >> > They are also somewhere under the same install tree and I just delete
> >> > the entire tree so that shouldn't be an issue.
> >> > 
> >> > > Does it work now when function is imported?
> >> > 
> >> > Yes, everything builds fine (just finished on Lucid) but something is
> >> > wrong which prevents me from running the demos. Will need to debug.
> >> 
> >> Are you compiling the demos with CMake/make or SCons?
> >
> >I wasn't sourcing the correct file before.
> >
> >I'm getting a ton of these now when I compile the Poisson demo:
> >
> >/home/logg/scratch/lib/fenics-dev/lib/libpytrilinos.so: undefined
> >reference to `PyObject_SetAttrString'
> >/home/logg/scratch/lib/fenics-dev/lib/libpytrilinos.so: undefined
> >reference to `PyType_IsSubtype'
> >/home/logg/scratch/lib/fenics-dev/lib/libpytrilinos.so: undefined
> >reference to `PyErr_Fetch'
> >/home/logg/scratch/lib/fenics-dev/lib/libpytrilinos.so: undefined
> >reference to `PyCObject_Import'
> >/home/logg/scratch/lib/fenics-dev/lib/libpytrilinos.so: undefined
> >reference to `PyExc_RuntimeError'
> >
> >Any ideas? I have never really used Trilinos before so I'm not
> >familiar with how it's setup, but do we really use the Python wrappers
> >for Trilinos? Perhaps they can be disabled in the build to get around
> >this.
> 
> Yes, just disable PyTrilinos. I've always had trouble with it. I think
> Sandia need to pay Johan Hake to sort themselves out.

That will be expensive...

I have no problems (now) to import PyTrilinos. It tooks some time to get it 
going. Is there any way I can export my CMake settings for compiling 
PyTrilinos?

It was not that a pleasent experience compiling it and I have forgot what ever 
options I chose in the cmake-gui...

Johan

> Garth
> 
> >--
> >Anders