dolfin team mailing list archive

Thread
Date
Re: buildbot failure in FEniCS Buildbot on dolfin-mac-osx

To: Anders Logg <logg@xxxxxxxxx>
From: Johan Hake <johan.hake@xxxxxxxxx>
Date: Tue, 1 Feb 2011 13:40:07 -0800
Cc: dolfin@xxxxxxxxxxxxxxxxxxx
In-reply-to: <20110201213711.GK5451@eowyn.simula.no>
Reply-to: johan.hake@xxxxxxxxx
User-agent: KMail/1.13.5 (Linux/2.6.35-24-generic; KDE/4.5.3; x86_64; ; )
I did a recent change (Garth complained previously this day)

How is this email doing?

Johan

On Tuesday February 1 2011 13:37:14 Anders Logg wrote:
> Johan, your KMail seems to introduce spaces between quoted lines (">")
> which makes things hard to read.
> 
> --
> Anders
> 
> On Tue, Feb 01, 2011 at 09:16:19AM -0800, Johan Hake wrote:
> > On Tuesday February 1 2011 08:38:02 Johannes Ring wrote:
> > > On Tue, Feb 1, 2011 at 5:28 PM, Johan Hake <johan.hake@xxxxxxxxx> wrote:
> > > > On Tuesday February 1 2011 04:02:03 Johannes Ring wrote:
> > > >> The problem can be triggered by the following code:
> > > >> 
> > > >> 
> > > >> 
> > > >> 
> > > >> 
> > > >> 
> > > >> 
> > > >> import dolfin
> > > >> 
> > > >> 
> > > >> 
> > > >> from numpy import int64
> > > >> 
> > > >> 
> > > >> 
> > > >> 
> > > >> 
> > > >> 
> > > >> 
> > > >> v = dolfin.Vector(16)
> > > >> 
> > > >> 
> > > >> 
> > > >> 
> > > >> 
> > > >> 
> > > >> 
> > > >> v[int(0)] = 2.0
> > > >> 
> > > >> 
> > > >> 
> > > >> print v[int(0)]
> > > >> 
> > > >> 
> > > >> 
> > > >> 
> > > >> 
> > > >> 
> > > >> 
> > > >> v[int64(0)] = 2.0
> > > >> 
> > > >> 
> > > >> 
> > > >> print v[int64(0)]
> > > >> 
> > > >> 
> > > >> 
> > > >> 
> > > >> 
> > > >> 
> > > >> 
> > > >> The output is:
> > > >> 
> > > >> 
> > > >> 
> > > >> 
> > > >> 
> > > >> 
> > > >> 
> > > >> 2.0
> > > >> 
> > > >> 
> > > >> 
> > > >> 0.0
> > > >> 
> > > >> 
> > > >> 
> > > >> 
> > > >> 
> > > >> 
> > > >> 
> > > >> Can someone with access to a Mac try and see if they experience the
> > > >> 
> > > >> 
> > > >> 
> > > >> same problem?
> > > >> 
> > > >> 
> > > >> 
> > > >> 
> > > >> 
> > > >> 
> > > >> 
> > > >> Actually, I tried it now on my laptop (Lucid, 32 bit) and I got this
> > > >> 
> > > >> error:
> > > >> >>> print v[int64(0)]
> > > >> 
> > > >> Traceback (most recent call last):
> > > >> 
> > > >> 
> > > >> 
> > > >> File "<stdin>", line 1, in <module>
> > > >> 
> > > >> 
> > > >> 
> > > >> File "/tmp/local/lib/python2.6/site-packages/dolfin/cpp.py", line
> > > >> 
> > > >> 
> > > >> 
> > > >> 3648, in __getitem__
> > > >> 
> > > >> 
> > > >> 
> > > >> return _get_vector_single_item(self, indices)
> > > >> 
> > > >> 
> > > >> 
> > > >> RuntimeError: index out of range
> > > > 
> > > > It works on my 64 bit Maverick. I will see if I can find a sollution
> > > > for
> > > > 
> > > > 32 bits. Any suggestions on the fly?
> > > 
> > > No, I don't know.
> > > 
> > > >> It works fine when I revert back to revision 5604 (Johan's original
> > > >> 
> > > >> 
> > > >> 
> > > >> 5618 was lost in a merge).
> > > > 
> > > > Do you suggest that the error came in the original 5618 changeset?
> > > 
> > > Yes, the Mac buildbot was green before your commit with this comment:
> > > 
> > > 
> > > 
> > > "Added a typemap macro for std::vector (passed by value) = for any
> > > 
> > > Python sequence of scalars. = -- Enabled for value_shape, values
> > > 
> > > (Constant) and coloring_type"
> > 
> > Interesting. I changed a int/float => int/uint/double conversion, from my
> > own to using SWIGs built in type conversions. I have now changed back
> > the typemaps for int and uint. Let see what Mr Macbot says!
> > 
> > Johan
> > 
> > > Build 1135 is green and build 1136 is red:
> > > 
> > > 
> > > 
> > > http://fenicsproject.org:8080/builders/dolfin-mac-osx/builds/1136
> > > 
> > > http://fenicsproject.org:8080/builders/dolfin-mac-osx/builds/1135
> > > 
> > > 
> > > 
> > > Johannes
> > > 
> > > > Johan
> > > > 
> > > >> Johannes
> > > >> 
> > > >> On Mon, Jan 31, 2011 at 10:19 AM, Johannes Ring <johannr@xxxxxxxxx> 
wrote:
> > > >> > The Python la unit test fails on the Mac buildbot with the
> > > >> > following
> > > >> > 
> > > >> > 
> > > >> > 
> > > >> > error after revision 5618. Any ideas?
> > > >> > 
> > > >> > 
> > > >> > 
> > > >> > 
> > > >> > 
> > > >> > 
> > > >> > 
> > > >> > Johannes
> > > >> > 
> > > >> > 
> > > >> > 
> > > >> > 
> > > >> > 
> > > >> > 
> > > >> > 
> > > >> > 
> > > >> > 
> > > >> > 
> > > >> > 
> > > >> > Testing basic PyDOLFIN linear algebra operations
> > > >> > 
> > > >> > 
> > > >> > 
> > > >> > ------------------------------------------------
> > > >> > 
> > > >> > 
> > > >> > 
> > > >> > 
> > > >> > 
> > > >> > 
> > > >> > 
> > > >> > Running: MTL4Tester
> > > >> > 
> > > >> > 
> > > >> > 
> > > >> > Calling FFC just-in-time (JIT) compiler, this may take some time.
> > > >> > 
> > > >> > 
> > > >> > 
> > > >> > Calling FFC just-in-time (JIT) compiler, this may take some time.
> > > >> > 
> > > >> > 
> > > >> > 
> > > >> > ..F.
> > > >> > 
> > > >> > 
> > > >> > 
> > > >> > Running: PETScTester
> > > >> > 
> > > >> > 
> > > >> > 
> > > >> > ..F.
> > > >> > 
> > > >> > 
> > > >> > 
> > > >> > Running: uBLASDenseTester
> > > >> > 
> > > >> > 
> > > >> > 
> > > >> > ..F.
> > > >> > 
> > > >> > 
> > > >> > 
> > > >> > Running: uBLASSparseTester
> > > >> > 
> > > >> > 
> > > >> > 
> > > >> > ..F.
> > > >> > 
> > > >> > 
> > > >> > 
> > > >> > ==================================================================
> > > >> > ====
> > > >> > 
> > > >> > 
> > > >> > 
> > > >> > FAIL: test_vector (__main__.MTL4Tester)
> > > >> > 
> > > >> > 
> > > >> > 
> > > >> > ------------------------------------------------------------------
> > > >> > ----
> > > >> > 
> > > >> > 
> > > >> > 
> > > >> > Traceback (most recent call last):
> > > >> > 
> > > >> > 
> > > >> > 
> > > >> >  File "test.py", line 162, in test_vector
> > > >> > 
> > > >> > 
> > > >> > 
> > > >> >    if org.owns_index(t(0)): self.assertAlmostEqual(org[t(0)], 2.0)
> > > >> > 
> > > >> > 
> > > >> > 
> > > >> > AssertionError: 0.033607290958676872 != 2.0 within 7 places
> > > >> > 
> > > >> > 
> > > >> > 
> > > >> > 
> > > >> > 
> > > >> > 
> > > >> > 
> > > >> > ==================================================================
> > > >> > ====
> > > >> > 
> > > >> > 
> > > >> > 
> > > >> > FAIL: test_vector (__main__.PETScTester)
> > > >> > 
> > > >> > 
> > > >> > 
> > > >> > ------------------------------------------------------------------
> > > >> > ----
> > > >> > 
> > > >> > 
> > > >> > 
> > > >> > Traceback (most recent call last):
> > > >> > 
> > > >> > 
> > > >> > 
> > > >> >  File "test.py", line 162, in test_vector
> > > >> > 
> > > >> > 
> > > >> > 
> > > >> >    if org.owns_index(t(0)): self.assertAlmostEqual(org[t(0)], 2.0)
> > > >> > 
> > > >> > 
> > > >> > 
> > > >> > AssertionError: 0.2551242083622477 != 2.0 within 7 places
> > > >> > 
> > > >> > 
> > > >> > 
> > > >> > 
> > > >> > 
> > > >> > 
> > > >> > 
> > > >> > ==================================================================
> > > >> > ====
> > > >> > 
> > > >> > 
> > > >> > 
> > > >> > FAIL: test_vector (__main__.uBLASDenseTester)
> > > >> > 
> > > >> > 
> > > >> > 
> > > >> > ------------------------------------------------------------------
> > > >> > ----
> > > >> > 
> > > >> > 
> > > >> > 
> > > >> > Traceback (most recent call last):
> > > >> > 
> > > >> > 
> > > >> > 
> > > >> >  File "test.py", line 162, in test_vector
> > > >> > 
> > > >> > 
> > > >> > 
> > > >> >    if org.owns_index(t(0)): self.assertAlmostEqual(org[t(0)], 2.0)
> > > >> > 
> > > >> > 
> > > >> > 
> > > >> > AssertionError: 0.96740583429440807 != 2.0 within 7 places
> > > >> > 
> > > >> > 
> > > >> > 
> > > >> > 
> > > >> > 
> > > >> > 
> > > >> > 
> > > >> > ==================================================================
> > > >> > ====
> > > >> > 
> > > >> > 
> > > >> > 
> > > >> > FAIL: test_vector (__main__.uBLASSparseTester)
> > > >> > 
> > > >> > 
> > > >> > 
> > > >> > ------------------------------------------------------------------
> > > >> > ----
> > > >> > 
> > > >> > 
> > > >> > 
> > > >> > Traceback (most recent call last):
> > > >> > 
> > > >> > 
> > > >> > 
> > > >> >  File "test.py", line 162, in test_vector
> > > >> > 
> > > >> > 
> > > >> > 
> > > >> >    if org.owns_index(t(0)): self.assertAlmostEqual(org[t(0)], 2.0)
> > > >> > 
> > > >> > 
> > > >> > 
> > > >> > AssertionError: 0.23277614769655719 != 2.0 within 7 places
> > > >> > 
> > > >> > 
> > > >> > 
> > > >> > 
> > > >> > 
> > > >> > 
> > > >> > 
> > > >> > ------------------------------------------------------------------
> > > >> > ----
> > > >> > 
> > > >> > 
> > > >> > 
> > > >> > Ran 16 tests in 3.726s
> > > >> > 
> > > >> > 
> > > >> > 
> > > >> > 
> > > >> > 
> > > >> > 
> > > >> > 
> > > >> > FAILED (failures=4)
> > > >> > 
> > > >> > On Sun, Jan 30, 2011 at 4:00 AM,  <buildbot@xxxxxxxxxx> wrote:
> > > >> >> The Buildbot has detected a new failure of dolfin-mac-osx on
> > > >> >> FEniCS
> > > >> >> 
> > > >> >> 
> > > >> >> 
> > > >> >> Buildbot. Full details are available at:
> > > >> >> 
> > > >> >> 
> > > >> >> 
> > > >> >>  http://fenicsproject.org:8080/builders/dolfin-mac-osx/builds/113
> > > >> >> 6
> > > >> >> 
> > > >> >> 
> > > >> >> 
> > > >> >> 
> > > >> >> 
> > > >> >> 
> > > >> >> 
> > > >> >> Buildbot URL: http://fenicsproject.org:8080/
> > > >> >> 
> > > >> >> 
> > > >> >> 
> > > >> >> 
> > > >> >> 
> > > >> >> 
> > > >> >> 
> > > >> >> Buildslave for this Build: mac-osx
> > > >> >> 
> > > >> >> 
> > > >> >> 
> > > >> >> 
> > > >> >> 
> > > >> >> 
> > > >> >> 
> > > >> >> Build Reason:
> > > >> >> 
> > > >> >> 
> > > >> >> 
> > > >> >> Build Source Stamp: HEAD
> > > >> >> 
> > > >> >> 
> > > >> >> 
> > > >> >> Blamelist: Johan Hake
> > > >> >> 
> > > >> >> 
> > > >> >> 
> > > >> >> 
> > > >> >> 
> > > >> >> 
> > > >> >> 
> > > >> >> BUILD FAILED: failed dolfin check
> > > >> >> 
> > > >> >> 
> > > >> >> 
> > > >> >> 
> > > >> >> 
> > > >> >> 
> > > >> >> 
> > > >> >> sincerely,
> > > >> >> 
> > > >> >> 
> > > >> >> 
> > > >> >>  -The Buildbot
> > > >> >> 
> > > >> >> 
> > > >> >> 
> > > >> >> 
> > > >> >> 
> > > >> >> 
> > > >> >> 
> > > >> >> 
> > > >> >> 
> > > >> >> 
> > > >> >> 
> > > >> >> _______________________________________________
> > > >> >> 
> > > >> >> 
> > > >> >> 
> > > >> >> Mailing list: https://launchpad.net/~dolfin
> > > >> >> 
> > > >> >> 
> > > >> >> 
> > > >> >> Post to     : dolfin@xxxxxxxxxxxxxxxxxxx
> > > >> >> 
> > > >> >> 
> > > >> >> 
> > > >> >> Unsubscribe : https://launchpad.net/~dolfin
> > > >> >> 
> > > >> >> 
> > > >> >> 
> > > >> >> More help   : https://help.launchpad.net/ListHelp
> > > >> 
> > > >> _______________________________________________
> > > >> 
> > > >> 
> > > >> 
> > > >> Mailing list: https://launchpad.net/~dolfin
> > > >> 
> > > >> 
> > > >> 
> > > >> Post to : dolfin@xxxxxxxxxxxxxxxxxxx
> > > >> 
> > > >> 
> > > >> 
> > > >> Unsubscribe : https://launchpad.net/~dolfin
> > > >> 
> > > >> 
> > > >> 
> > > >> More help : https://help.launchpad.net/ListHelp
> > 
> > _______________________________________________
> > Mailing list: https://launchpad.net/~dolfin
> > Post to     : dolfin@xxxxxxxxxxxxxxxxxxx
> > Unsubscribe : https://launchpad.net/~dolfin
> > More help   : https://help.launchpad.net/ListHelp
Follow ups

Re: buildbot failure in FEniCS Buildbot on dolfin-mac-osx
From: Anders Logg, 2011-02-01
References

buildbot failure in FEniCS Buildbot on dolfin-mac-osx
From: buildbot, 2011-01-30
Re: buildbot failure in FEniCS Buildbot on dolfin-mac-osx
From: Johan Hake, 2011-02-01
Re: buildbot failure in FEniCS Buildbot on dolfin-mac-osx
From: Anders Logg, 2011-02-01