dolfin team mailing list archive

[Johannes Ring <johannr@xxxxxxxxx>]

On Fri, Apr 27, 2012 at 1:19 PM, Johannes Ring <johannr@xxxxxxxxx> wrote:
> On Fri, Apr 27, 2012 at 1:07 PM, Anders Logg <logg@xxxxxxxxx> wrote:
>> On Fri, Apr 27, 2012 at 12:55:08PM +0200, Johannes Ring wrote:
>>> I found a very clever fix for this now. Simply remove Boost 1.47
>>> installed by Dorsal and rebuild everything with the system wide Boost
>>> 1.42 packages. Bug gone and the linux64-exp buildbot should very soon
>>> be green again.
>>>
>>> Johannes
>>
>> Great!!!
>
> Argh! I spoke to soon. It didn't work in parallel.

I ran "mpirun -np 2 xterm -e gdb ./demo_mesh-generation" and the gdb
stacktrace is below. Any ideas?

Johannes

GNU gdb (GDB) 7.1-ubuntu
Copyright (C) 2010 Free Software Foundation, Inc.
License GPLv3+: GNU GPL version 3 or later <http://gnu.org/licenses/gpl.html>
This is free software: you are free to change and redistribute it.
There is NO WARRANTY, to the extent permitted by law.  Type "show copying"
and "show warranty" for details.
This GDB was configured as "x86_64-linux-gnu".
For bug reporting instructions, please see:
<http://www.gnu.org/software/gdb/bugs/>...
Reading symbols from
/scratch/fenics/buildbots/trunk/fenics-build/dolfin/demo/undocumented/mesh-generation/cpp/demo_mesh-generation...done.
(gdb) run
Starting program:
/scratch/fenics/buildbots/trunk/fenics-build/dolfin/demo/undocumented/mesh-generation/cpp/demo_mesh-generation
[Thread debugging using libthread_db enabled]
Process 1: Partitioned mesh, edge cut is 20.
Process 1: Plotting mesh (DOLFIN mesh).
Process 1: *** Warning: Plotting disabled when running in parallel;
see https://bugs.launchpad.net/dolfin/+bug/427534

Program received signal SIGSEGV, Segmentation fault.
0x00007fffef1ee682 in ParMETIS_V3_Mesh2Dual () from /usr/lib/libparmetis.so.3.1
(gdb) where
#0  0x00007fffef1ee682 in ParMETIS_V3_Mesh2Dual ()
   from /usr/lib/libparmetis.so.3.1
#1  0x00000b74000006b4 in ?? ()
#2  0x0000081100000847 in ?? ()
#3  0x0000093700000628 in ?? ()
#4  0x000009dc0000081c in ?? ()
#5  0x000008920000081d in ?? ()
#6  0x000006cb00000b16 in ?? ()
#7  0x00000b2c00000b57 in ?? ()
#8  0x000005ff00000695 in ?? ()
#9  0x0000066700000665 in ?? ()
#10 0x000009000000092b in ?? ()
#11 0x000006d200000719 in ?? ()
#12 0x0000090a00000908 in ?? ()
#13 0x000006fa000006d4 in ?? ()
#14 0x0000092700000926 in ?? ()
#15 0x0000069600000b58 in ?? ()
#16 0x00000b920000096c in ?? ()
#17 0x00000b2700000b2b in ?? ()
#18 0x00000b15000006c9 in ?? ()
#19 0x00000b1400000698 in ?? ()
#20 0x00000b2a000009d7 in ?? ()
#21 0x0000093600000b93 in ?? ()
---Type <return> to continue, or q <return> to quit---
#22 0x00000b260000079a in ?? ()
#23 0x00000b5c000006c7 in ?? ()
#24 0x00000acd00000b4b in ?? ()
#25 0x00000b2f000005f5 in ?? ()
#26 0x000006ae00000b73 in ?? ()
#27 0x00000b3100000b30 in ?? ()
#28 0x00000a550000081b in ?? ()
#29 0x00000b5200000ac3 in ?? ()
#30 0x000006eb00000832 in ?? ()
#31 0x00000833000006ea in ?? ()
#32 0x000008f70000063a in ?? ()
#33 0x000005e900000b4e in ?? ()
#34 0x00000bac00000a66 in ?? ()
#35 0x00000a5400000b35 in ?? ()
#36 0x0000000000000904 in ?? ()
#37 0x0000000200000000 in ?? ()
#38 0x0000000000000000 in ?? ()
(gdb)