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Message #26386
Fwd: [Branch ~dolfin-core/dolfin/trunk] Rev 7462: Changed unsigned long int to std::size_t in File interface fixing
This will cause a problem on 32-bit systems where std::size_t is a
typedef for unsigned int. The use of long unsigned int was deliberate.
Garth
---------- Forwarded message ----------
From: <noreply@xxxxxxxxxxxxx>
Date: 21 February 2013 19:38
Subject: [Branch ~dolfin-core/dolfin/trunk] Rev 7462: Changed unsigned
long int to std::size_t in File interface fixing
To: Garth Wells <gnw20@xxxxxxxxx>
------------------------------------------------------------
revno: 7462
committer: Johan Hake <hake.dev@xxxxxxxxx>
branch nick: work-trunk
timestamp: Thu 2013-02-21 20:35:38 +0100
message:
Changed unsigned long int to std::size_t in File interface fixing
problem with outputting MeshFunction<std::size_t> to file
modified:
dolfin/io/GenericFile.cpp
dolfin/io/GenericFile.h
dolfin/io/HDF5Interface.h
dolfin/io/VTKFile.cpp
dolfin/io/VTKFile.h
dolfin/io/XDMFFile.cpp
dolfin/io/XDMFFile.h
dolfin/io/XMLFile.h
dolfin/swig/io/pre.i
test/unit/io/python/XDMF.py
--
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=== modified file 'dolfin/io/GenericFile.cpp'
--- dolfin/io/GenericFile.cpp 2012-12-04 20:34:24 +0000
+++ dolfin/io/GenericFile.cpp 2013-02-21 19:35:38 +0000
@@ -73,9 +73,9 @@
read_not_impl("MeshFunction<int>");
}
//-----------------------------------------------------------------------------
-void GenericFile::operator>> (MeshFunction<unsigned long int>& mesh_function)
+void GenericFile::operator>> (MeshFunction<std::size_t>& mesh_function)
{
- read_not_impl("MeshFunction<unsigned long int>");
+ read_not_impl("MeshFunction<std::size_t>");
}
//-----------------------------------------------------------------------------
void GenericFile::operator>> (MeshFunction<unsigned int>& mesh_function)
@@ -98,9 +98,9 @@
read_not_impl("MeshValueCollection<int>");
}
//-----------------------------------------------------------------------------
-void GenericFile::operator>> (MeshValueCollection<unsigned long int>&
mesh_markers)
+void GenericFile::operator>> (MeshValueCollection<std::size_t>& mesh_markers)
{
- read_not_impl("MeshValueCollection<unsigned long int>");
+ read_not_impl("MeshValueCollection<std::size_t>");
}
//-----------------------------------------------------------------------------
void GenericFile::operator>> (MeshValueCollection<unsigned int>& mesh_markers)
@@ -202,10 +202,9 @@
{
write_not_impl("MeshFunction<int>");
}
-//-----------------------------------------------------------------------------
-void GenericFile::operator<< (const MeshFunction<unsigned long int>&
mesh_function)
+void GenericFile::operator<< (const MeshFunction<std::size_t>& mesh_function)
{
- write_not_impl("MeshFunction<unsigned long int>");
+ write_not_impl("MeshFunction<std::size_t>");
}
//-----------------------------------------------------------------------------
void GenericFile::operator<< (const MeshFunction<unsigned int>& mesh_function)
@@ -228,9 +227,9 @@
write_not_impl("MeshValueCollection<int>");
}
//-----------------------------------------------------------------------------
-void GenericFile::operator<< (const MeshValueCollection<unsigned long
int>& mesh_markers)
+void GenericFile::operator<< (const MeshValueCollection<std::size_t>&
mesh_markers)
{
- write_not_impl("MeshValueCollection<unsigned long int>");
+ write_not_impl("MeshValueCollection<std::size_t>");
}
//-----------------------------------------------------------------------------
void GenericFile::operator<< (const MeshValueCollection<unsigned
int>& mesh_markers)
=== modified file 'dolfin/io/GenericFile.h'
--- dolfin/io/GenericFile.h 2012-12-19 17:29:40 +0000
+++ dolfin/io/GenericFile.h 2013-02-21 19:35:38 +0000
@@ -59,12 +59,12 @@
virtual void operator>> (GenericDofMap& dofmap);
virtual void operator>> (LocalMeshData& data);
virtual void operator>> (MeshFunction<int>& mesh_function);
- virtual void operator>> (MeshFunction<unsigned long int>& mesh_function);
+ virtual void operator>> (MeshFunction<std::size_t>& mesh_function);
virtual void operator>> (MeshFunction<unsigned int>& mesh_function);
virtual void operator>> (MeshFunction<double>& mesh_function);
virtual void operator>> (MeshFunction<bool>& mesh_function);
virtual void operator>> (MeshValueCollection<int>& mesh_markers);
- virtual void operator>> (MeshValueCollection<unsigned long int>&
mesh_markers);
+ virtual void operator>> (MeshValueCollection<std::size_t>& mesh_markers);
virtual void operator>> (MeshValueCollection<unsigned int>& mesh_markers);
virtual void operator>> (MeshValueCollection<double>& mesh_markers);
virtual void operator>> (MeshValueCollection<bool>& mesh_markers);
@@ -87,12 +87,12 @@
virtual void operator<< (const GenericDofMap& dofmap);
virtual void operator<< (const LocalMeshData& data);
virtual void operator<< (const MeshFunction<int>& mesh_function);
- virtual void operator<< (const MeshFunction<unsigned long int>&
mesh_function);
+ virtual void operator<< (const MeshFunction<std::size_t>& mesh_function);
virtual void operator<< (const MeshFunction<unsigned int>& mesh_function);
virtual void operator<< (const MeshFunction<double>& mesh_function);
virtual void operator<< (const MeshFunction<bool>& mesh_function);
virtual void operator<< (const MeshValueCollection<int>& mesh_markers);
- virtual void operator<< (const MeshValueCollection<unsigned long
int>& mesh_markers);
+ virtual void operator<< (const MeshValueCollection<std::size_t>&
mesh_markers);
virtual void operator<< (const MeshValueCollection<unsigned int>&
mesh_markers);
virtual void operator<< (const MeshValueCollection<double>& mesh_markers);
virtual void operator<< (const MeshValueCollection<bool>& mesh_markers);
=== modified file 'dolfin/io/HDF5Interface.h'
--- dolfin/io/HDF5Interface.h 2012-12-19 17:29:40 +0000
+++ dolfin/io/HDF5Interface.h 2013-02-21 19:35:38 +0000
@@ -458,7 +458,7 @@
template<>
inline void HDF5Interface::add_attribute_value(const hid_t dset_id,
const std::string attribute_name,
- const std::vector<unsigned
long int>& attribute_value)
+ const
std::vector<std::size_t>& attribute_value)
{
// Create a vector dataspace
@@ -526,7 +526,7 @@
template<>
inline void HDF5Interface::get_attribute_value(const hid_t attr_type,
const hid_t attr_id,
- unsigned long int&
attribute_value)
+ std::size_t& attribute_value)
{
// FIXME: more complete check of type
dolfin_assert(H5Tget_class(attr_type) == H5T_INTEGER);
@@ -588,7 +588,7 @@
template<>
inline void HDF5Interface::get_attribute_value(const hid_t attr_type,
const hid_t attr_id,
- std::vector<unsigned long
int>& attribute_value)
+ std::vector<std::size_t>&
attribute_value)
{
// FIXME: more complete check of type
dolfin_assert(H5Tget_class(attr_type) == H5T_INTEGER);
@@ -622,7 +622,7 @@
{ return H5T_NATIVE_UINT; }
//-----------------------------------------------------------------------------
template <>
- inline hid_t HDF5Interface::hdf5_type<unsigned long int>()
+ inline hid_t HDF5Interface::hdf5_type<std::size_t>()
{ return H5T_NATIVE_ULONG; }
//-----------------------------------------------------------------------------
=== modified file 'dolfin/io/VTKFile.cpp'
--- dolfin/io/VTKFile.cpp 2013-02-05 19:34:25 +0000
+++ dolfin/io/VTKFile.cpp 2013-02-21 19:35:38 +0000
@@ -128,7 +128,7 @@
mesh_function_write(meshfunction);
}
//----------------------------------------------------------------------------
-void VTKFile::operator<<(const MeshFunction<unsigned long int>& meshfunction)
+void VTKFile::operator<<(const MeshFunction<std::size_t>& meshfunction)
{
mesh_function_write(meshfunction);
}
=== modified file 'dolfin/io/VTKFile.h'
--- dolfin/io/VTKFile.h 2012-12-04 11:29:59 +0000
+++ dolfin/io/VTKFile.h 2013-02-21 19:35:38 +0000
@@ -52,7 +52,7 @@
void operator<< (const Mesh& mesh);
void operator<< (const MeshFunction<bool>& meshfunction);
void operator<< (const MeshFunction<unsigned int>& meshfunction);
- void operator<< (const MeshFunction<unsigned long int>& meshfunction);
+ void operator<< (const MeshFunction<std::size_t>& meshfunction);
void operator<< (const MeshFunction<int>& meshfunction);
void operator<< (const MeshFunction<double>& meshfunction);
void operator<< (const Function& u);
=== modified file 'dolfin/io/XDMFFile.cpp'
--- dolfin/io/XDMFFile.cpp 2013-02-11 15:13:49 +0000
+++ dolfin/io/XDMFFile.cpp 2013-02-21 19:35:38 +0000
@@ -453,7 +453,7 @@
write_mesh_function(meshfunction);
}
//----------------------------------------------------------------------------
-void XDMFFile::operator<< (const MeshFunction<unsigned long int>& meshfunction)
+void XDMFFile::operator<< (const MeshFunction<std::size_t>& meshfunction)
{
write_mesh_function(meshfunction);
}
=== modified file 'dolfin/io/XDMFFile.h'
--- dolfin/io/XDMFFile.h 2012-12-04 11:29:59 +0000
+++ dolfin/io/XDMFFile.h 2013-02-21 19:35:38 +0000
@@ -77,7 +77,7 @@
void operator<< (const MeshFunction<bool>& meshfunction);
void operator<< (const MeshFunction<int>& meshfunction);
void operator<< (const MeshFunction<unsigned int>& meshfunction);
- void operator<< (const MeshFunction<unsigned long int>& meshfunction);
+ void operator<< (const MeshFunction<std::size_t>& meshfunction);
void operator<< (const MeshFunction<double>& meshfunction);
private:
=== modified file 'dolfin/io/XMLFile.h'
--- dolfin/io/XMLFile.h 2012-12-19 19:10:49 +0000
+++ dolfin/io/XMLFile.h 2013-02-21 19:35:38 +0000
@@ -89,9 +89,9 @@
{ write_mesh_function(output, "uint"); }
// MeshFunction (uint)
- void operator>> (MeshFunction<unsigned long int>& input)
+ void operator>> (MeshFunction<std::size_t>& input)
{ read_mesh_function(input, "uint"); }
- void operator<< (const MeshFunction<unsigned long int>& output)
+ void operator<< (const MeshFunction<std::size_t>& output)
{ write_mesh_function(output, "uint"); }
// MeshFunction (int)
@@ -118,10 +118,10 @@
void operator<< (const MeshValueCollection<unsigned int>& output)
{ write_mesh_value_collection(output, "uint"); }
- // MeshValueCollection (unsigned long int)
- void operator>> (MeshValueCollection<unsigned long int>& input)
+ // MeshValueCollection (std::size_t)
+ void operator>> (MeshValueCollection<std::size_t>& input)
{ read_mesh_value_collection(input, "uint"); }
- void operator<< (const MeshValueCollection<unsigned long int>& output)
+ void operator<< (const MeshValueCollection<std::size_t>& output)
{ write_mesh_value_collection(output, "uint"); }
// MeshValueCollection (int)
=== modified file 'dolfin/swig/io/pre.i'
--- dolfin/swig/io/pre.i 2012-12-04 20:34:24 +0000
+++ dolfin/swig/io/pre.i 2013-02-21 19:35:38 +0000
@@ -17,7 +17,7 @@
// along with DOLFIN. If not, see <http://www.gnu.org/licenses/>.
//
// First added: 2012-11-01
-// Last changed: 2012-11-01
+// Last changed: 2013-02-21
%ignore dolfin::GenericFile::operator>> (std::vector<int>& x);
%ignore dolfin::GenericFile::operator>> (std::vector<std::size_t>& x);
=== modified file 'test/unit/io/python/XDMF.py'
--- test/unit/io/python/XDMF.py 2013-02-05 16:34:21 +0000
+++ test/unit/io/python/XDMF.py 2013-02-21 19:35:38 +0000
@@ -30,14 +30,17 @@
def test_save_1d_mesh(self):
mesh = UnitIntervalMesh(32)
File("output/mesh.xdmf") << mesh
+ XDMFFile("output/mesh.xdmf") << mesh
def test_save_2d_mesh(self):
mesh = UnitSquareMesh(32, 32)
File("output/mesh_2D.xdmf") << mesh
+ XDMFFile("output/mesh_2D.xdmf") << mesh
def test_save_3d_mesh(self):
mesh = UnitCubeMesh(8, 8, 8)
File("output/mesh_3D.xdmf") << mesh
+ XDMFFile("output/mesh_3D.xdmf") << mesh
class XDMF_Vertex_Function_Output(unittest.TestCase):
"""Test output of vertex-based Functions to XDMF files"""
@@ -47,18 +50,21 @@
u = Function(FunctionSpace(mesh, "Lagrange", 2))
u.vector()[:] = 1.0
File("output/u.xdmf") << u
+ XDMFFile("output/u.xdmf") << u
def test_save_2d_scalar(self):
mesh = UnitSquareMesh(16, 16)
u = Function(FunctionSpace(mesh, "Lagrange", 2))
u.vector()[:] = 1.0
File("output/u.xdmf") << u
+ XDMFFile("output/u.xdmf") << u
def test_save_3d_scalar(self):
mesh = UnitCubeMesh(8, 8, 8)
u = Function(FunctionSpace(mesh, "Lagrange", 2))
u.vector()[:] = 1.0
File("output/u.xdmf") << u
+ XDMFFile("output/u.xdmf") << u
def test_save_2d_vector(self):
mesh = UnitSquareMesh(16, 16)
@@ -66,6 +72,7 @@
c = Constant((1.0, 2.0))
u.interpolate(c)
File("output/u_2dv.xdmf") << u
+ XDMFFile("output/u.xdmf") << u
def test_save_3d_vector(self):
mesh = UnitCubeMesh(1, 1, 1)
@@ -73,6 +80,7 @@
c = Constant((1.0, 2.0, 3.0))
u.interpolate(c)
File("output/u_3Dv.xdmf") << u
+ XDMFFile("output/u.xdmf") << u
def test_save_3d_vector_series(self):
mesh = UnitCubeMesh(8, 8, 8)
@@ -87,18 +95,32 @@
u.vector()[:] = 3.0
file << (u, 0.3)
+ del file
+
+ file = XDMFFile("output/u_3D.xdmf")
+
+ u.vector()[:] = 1.0
+ file << (u, 0.1)
+
+ u.vector()[:] = 2.0
+ file << (u, 0.2)
+
+ u.vector()[:] = 3.0
+ file << (u, 0.3)
def test_save_2d_tensor(self):
mesh = UnitSquareMesh(16, 16)
u = Function(TensorFunctionSpace(mesh, "Lagrange", 2))
u.vector()[:] = 1.0
File("output/tensor.xdmf") << u
+ XDMFFile("output/tensor.xdmf") << u
def test_save_3d_tensor(self):
mesh = UnitCubeMesh(8, 8, 8)
u = Function(TensorFunctionSpace(mesh, "Lagrange", 2))
u.vector()[:] = 1.0
File("output/u.xdmf") << u
+ XDMFFile("output/u.xdmf") << u
class XDMF_MeshFunction_Output(unittest.TestCase):
"""Test output of Meshes to XDMF files"""
@@ -110,6 +132,7 @@
for cell in cells(mesh):
mf[cell] = cell.index()
File("output/mf_1D.xdmf") << mf
+ XDMFFile("output/mf_1D.xdmf") << mf
def test_save_2D_cell_function(self):
mesh = UnitSquareMesh(32, 32)
@@ -117,6 +140,7 @@
for cell in cells(mesh):
mf[cell] = cell.index()
File("output/mf_2D.xdmf") << mf
+ XDMFFile("output/mf_2D.xdmf") << mf
def test_save_3D_cell_function(self):
mesh = UnitCubeMesh(8, 8, 8)
@@ -124,6 +148,7 @@
for cell in cells(mesh):
mf[cell] = cell.index()
File("output/mf_3D.xdmf") << mf
+ XDMFFile("output/mf_3D.xdmf") << mf
def test_save_2D_facet_function(self):
mesh = UnitSquareMesh(32, 32)
@@ -131,6 +156,7 @@
for facet in facets(mesh):
mf[facet] = facet.index()
File("output/mf_facet_2D.xdmf") << mf
+ XDMFFile("output/mf_facet_2D.xdmf") << mf
def test_save_3D_facet_function(self):
mesh = UnitCubeMesh(8, 8, 8)
@@ -138,6 +164,7 @@
for facet in facets(mesh):
mf[facet] = facet.index()
File("output/mf_facet_3D.xdmf") << mf
+ XDMFFile("output/mf_facet_3D.xdmf") << mf
def test_save_3D_edge_function(self):
mesh = UnitCubeMesh(8, 8, 8)
@@ -145,6 +172,7 @@
for edge in edges(mesh):
mf[edge] = edge.index()
File("output/mf_edge_3D.xdmf") << mf
+ XDMFFile("output/mf_edge_3D.xdmf") << mf
def test_save_2D_vertex_function(self):
mesh = UnitSquareMesh(32, 32)
@@ -152,6 +180,7 @@
for vertex in vertices(mesh):
mf[vertex] = vertex.index()
File("output/mf_vertex_2D.xdmf") << mf
+ XDMFFile("output/mf_vertex_2D.xdmf") << mf
def test_save_3D_vertex_function(self):
mesh = UnitCubeMesh(8, 8, 8)
@@ -159,6 +188,7 @@
for vertex in vertices(mesh):
mf[vertex] = vertex.index()
File("output/mf_vertex_3D.xdmf") << mf
+ XDMFFile("output/mf_vertex_3D.xdmf") << mf
if __name__ == "__main__":
unittest.main()
=== modified file 'dolfin/io/GenericFile.cpp'
--- dolfin/io/GenericFile.cpp 2012-12-04 20:34:24 +0000
+++ dolfin/io/GenericFile.cpp 2013-02-21 19:35:38 +0000
@@ -73,9 +73,9 @@
read_not_impl("MeshFunction<int>");
}
//-----------------------------------------------------------------------------
-void GenericFile::operator>> (MeshFunction<unsigned long int>& mesh_function)
+void GenericFile::operator>> (MeshFunction<std::size_t>& mesh_function)
{
- read_not_impl("MeshFunction<unsigned long int>");
+ read_not_impl("MeshFunction<std::size_t>");
}
//-----------------------------------------------------------------------------
void GenericFile::operator>> (MeshFunction<unsigned int>& mesh_function)
@@ -98,9 +98,9 @@
read_not_impl("MeshValueCollection<int>");
}
//-----------------------------------------------------------------------------
-void GenericFile::operator>> (MeshValueCollection<unsigned long int>& mesh_markers)
+void GenericFile::operator>> (MeshValueCollection<std::size_t>& mesh_markers)
{
- read_not_impl("MeshValueCollection<unsigned long int>");
+ read_not_impl("MeshValueCollection<std::size_t>");
}
//-----------------------------------------------------------------------------
void GenericFile::operator>> (MeshValueCollection<unsigned int>& mesh_markers)
@@ -202,10 +202,9 @@
{
write_not_impl("MeshFunction<int>");
}
-//-----------------------------------------------------------------------------
-void GenericFile::operator<< (const MeshFunction<unsigned long int>& mesh_function)
+void GenericFile::operator<< (const MeshFunction<std::size_t>& mesh_function)
{
- write_not_impl("MeshFunction<unsigned long int>");
+ write_not_impl("MeshFunction<std::size_t>");
}
//-----------------------------------------------------------------------------
void GenericFile::operator<< (const MeshFunction<unsigned int>& mesh_function)
@@ -228,9 +227,9 @@
write_not_impl("MeshValueCollection<int>");
}
//-----------------------------------------------------------------------------
-void GenericFile::operator<< (const MeshValueCollection<unsigned long int>& mesh_markers)
+void GenericFile::operator<< (const MeshValueCollection<std::size_t>& mesh_markers)
{
- write_not_impl("MeshValueCollection<unsigned long int>");
+ write_not_impl("MeshValueCollection<std::size_t>");
}
//-----------------------------------------------------------------------------
void GenericFile::operator<< (const MeshValueCollection<unsigned int>& mesh_markers)
=== modified file 'dolfin/io/GenericFile.h'
--- dolfin/io/GenericFile.h 2012-12-19 17:29:40 +0000
+++ dolfin/io/GenericFile.h 2013-02-21 19:35:38 +0000
@@ -59,12 +59,12 @@
virtual void operator>> (GenericDofMap& dofmap);
virtual void operator>> (LocalMeshData& data);
virtual void operator>> (MeshFunction<int>& mesh_function);
- virtual void operator>> (MeshFunction<unsigned long int>& mesh_function);
+ virtual void operator>> (MeshFunction<std::size_t>& mesh_function);
virtual void operator>> (MeshFunction<unsigned int>& mesh_function);
virtual void operator>> (MeshFunction<double>& mesh_function);
virtual void operator>> (MeshFunction<bool>& mesh_function);
virtual void operator>> (MeshValueCollection<int>& mesh_markers);
- virtual void operator>> (MeshValueCollection<unsigned long int>& mesh_markers);
+ virtual void operator>> (MeshValueCollection<std::size_t>& mesh_markers);
virtual void operator>> (MeshValueCollection<unsigned int>& mesh_markers);
virtual void operator>> (MeshValueCollection<double>& mesh_markers);
virtual void operator>> (MeshValueCollection<bool>& mesh_markers);
@@ -87,12 +87,12 @@
virtual void operator<< (const GenericDofMap& dofmap);
virtual void operator<< (const LocalMeshData& data);
virtual void operator<< (const MeshFunction<int>& mesh_function);
- virtual void operator<< (const MeshFunction<unsigned long int>& mesh_function);
+ virtual void operator<< (const MeshFunction<std::size_t>& mesh_function);
virtual void operator<< (const MeshFunction<unsigned int>& mesh_function);
virtual void operator<< (const MeshFunction<double>& mesh_function);
virtual void operator<< (const MeshFunction<bool>& mesh_function);
virtual void operator<< (const MeshValueCollection<int>& mesh_markers);
- virtual void operator<< (const MeshValueCollection<unsigned long int>& mesh_markers);
+ virtual void operator<< (const MeshValueCollection<std::size_t>& mesh_markers);
virtual void operator<< (const MeshValueCollection<unsigned int>& mesh_markers);
virtual void operator<< (const MeshValueCollection<double>& mesh_markers);
virtual void operator<< (const MeshValueCollection<bool>& mesh_markers);
=== modified file 'dolfin/io/HDF5Interface.h'
--- dolfin/io/HDF5Interface.h 2012-12-19 17:29:40 +0000
+++ dolfin/io/HDF5Interface.h 2013-02-21 19:35:38 +0000
@@ -458,7 +458,7 @@
template<>
inline void HDF5Interface::add_attribute_value(const hid_t dset_id,
const std::string attribute_name,
- const std::vector<unsigned long int>& attribute_value)
+ const std::vector<std::size_t>& attribute_value)
{
// Create a vector dataspace
@@ -526,7 +526,7 @@
template<>
inline void HDF5Interface::get_attribute_value(const hid_t attr_type,
const hid_t attr_id,
- unsigned long int& attribute_value)
+ std::size_t& attribute_value)
{
// FIXME: more complete check of type
dolfin_assert(H5Tget_class(attr_type) == H5T_INTEGER);
@@ -588,7 +588,7 @@
template<>
inline void HDF5Interface::get_attribute_value(const hid_t attr_type,
const hid_t attr_id,
- std::vector<unsigned long int>& attribute_value)
+ std::vector<std::size_t>& attribute_value)
{
// FIXME: more complete check of type
dolfin_assert(H5Tget_class(attr_type) == H5T_INTEGER);
@@ -622,7 +622,7 @@
{ return H5T_NATIVE_UINT; }
//-----------------------------------------------------------------------------
template <>
- inline hid_t HDF5Interface::hdf5_type<unsigned long int>()
+ inline hid_t HDF5Interface::hdf5_type<std::size_t>()
{ return H5T_NATIVE_ULONG; }
//-----------------------------------------------------------------------------
=== modified file 'dolfin/io/VTKFile.cpp'
--- dolfin/io/VTKFile.cpp 2013-02-05 19:34:25 +0000
+++ dolfin/io/VTKFile.cpp 2013-02-21 19:35:38 +0000
@@ -128,7 +128,7 @@
mesh_function_write(meshfunction);
}
//----------------------------------------------------------------------------
-void VTKFile::operator<<(const MeshFunction<unsigned long int>& meshfunction)
+void VTKFile::operator<<(const MeshFunction<std::size_t>& meshfunction)
{
mesh_function_write(meshfunction);
}
=== modified file 'dolfin/io/VTKFile.h'
--- dolfin/io/VTKFile.h 2012-12-04 11:29:59 +0000
+++ dolfin/io/VTKFile.h 2013-02-21 19:35:38 +0000
@@ -52,7 +52,7 @@
void operator<< (const Mesh& mesh);
void operator<< (const MeshFunction<bool>& meshfunction);
void operator<< (const MeshFunction<unsigned int>& meshfunction);
- void operator<< (const MeshFunction<unsigned long int>& meshfunction);
+ void operator<< (const MeshFunction<std::size_t>& meshfunction);
void operator<< (const MeshFunction<int>& meshfunction);
void operator<< (const MeshFunction<double>& meshfunction);
void operator<< (const Function& u);
=== modified file 'dolfin/io/XDMFFile.cpp'
--- dolfin/io/XDMFFile.cpp 2013-02-11 15:13:49 +0000
+++ dolfin/io/XDMFFile.cpp 2013-02-21 19:35:38 +0000
@@ -453,7 +453,7 @@
write_mesh_function(meshfunction);
}
//----------------------------------------------------------------------------
-void XDMFFile::operator<< (const MeshFunction<unsigned long int>& meshfunction)
+void XDMFFile::operator<< (const MeshFunction<std::size_t>& meshfunction)
{
write_mesh_function(meshfunction);
}
=== modified file 'dolfin/io/XDMFFile.h'
--- dolfin/io/XDMFFile.h 2012-12-04 11:29:59 +0000
+++ dolfin/io/XDMFFile.h 2013-02-21 19:35:38 +0000
@@ -77,7 +77,7 @@
void operator<< (const MeshFunction<bool>& meshfunction);
void operator<< (const MeshFunction<int>& meshfunction);
void operator<< (const MeshFunction<unsigned int>& meshfunction);
- void operator<< (const MeshFunction<unsigned long int>& meshfunction);
+ void operator<< (const MeshFunction<std::size_t>& meshfunction);
void operator<< (const MeshFunction<double>& meshfunction);
private:
=== modified file 'dolfin/io/XMLFile.h'
--- dolfin/io/XMLFile.h 2012-12-19 19:10:49 +0000
+++ dolfin/io/XMLFile.h 2013-02-21 19:35:38 +0000
@@ -89,9 +89,9 @@
{ write_mesh_function(output, "uint"); }
// MeshFunction (uint)
- void operator>> (MeshFunction<unsigned long int>& input)
+ void operator>> (MeshFunction<std::size_t>& input)
{ read_mesh_function(input, "uint"); }
- void operator<< (const MeshFunction<unsigned long int>& output)
+ void operator<< (const MeshFunction<std::size_t>& output)
{ write_mesh_function(output, "uint"); }
// MeshFunction (int)
@@ -118,10 +118,10 @@
void operator<< (const MeshValueCollection<unsigned int>& output)
{ write_mesh_value_collection(output, "uint"); }
- // MeshValueCollection (unsigned long int)
- void operator>> (MeshValueCollection<unsigned long int>& input)
+ // MeshValueCollection (std::size_t)
+ void operator>> (MeshValueCollection<std::size_t>& input)
{ read_mesh_value_collection(input, "uint"); }
- void operator<< (const MeshValueCollection<unsigned long int>& output)
+ void operator<< (const MeshValueCollection<std::size_t>& output)
{ write_mesh_value_collection(output, "uint"); }
// MeshValueCollection (int)
=== modified file 'dolfin/swig/io/pre.i'
--- dolfin/swig/io/pre.i 2012-12-04 20:34:24 +0000
+++ dolfin/swig/io/pre.i 2013-02-21 19:35:38 +0000
@@ -17,7 +17,7 @@
// along with DOLFIN. If not, see <http://www.gnu.org/licenses/>.
//
// First added: 2012-11-01
-// Last changed: 2012-11-01
+// Last changed: 2013-02-21
%ignore dolfin::GenericFile::operator>> (std::vector<int>& x);
%ignore dolfin::GenericFile::operator>> (std::vector<std::size_t>& x);
=== modified file 'test/unit/io/python/XDMF.py'
--- test/unit/io/python/XDMF.py 2013-02-05 16:34:21 +0000
+++ test/unit/io/python/XDMF.py 2013-02-21 19:35:38 +0000
@@ -30,14 +30,17 @@
def test_save_1d_mesh(self):
mesh = UnitIntervalMesh(32)
File("output/mesh.xdmf") << mesh
+ XDMFFile("output/mesh.xdmf") << mesh
def test_save_2d_mesh(self):
mesh = UnitSquareMesh(32, 32)
File("output/mesh_2D.xdmf") << mesh
+ XDMFFile("output/mesh_2D.xdmf") << mesh
def test_save_3d_mesh(self):
mesh = UnitCubeMesh(8, 8, 8)
File("output/mesh_3D.xdmf") << mesh
+ XDMFFile("output/mesh_3D.xdmf") << mesh
class XDMF_Vertex_Function_Output(unittest.TestCase):
"""Test output of vertex-based Functions to XDMF files"""
@@ -47,18 +50,21 @@
u = Function(FunctionSpace(mesh, "Lagrange", 2))
u.vector()[:] = 1.0
File("output/u.xdmf") << u
+ XDMFFile("output/u.xdmf") << u
def test_save_2d_scalar(self):
mesh = UnitSquareMesh(16, 16)
u = Function(FunctionSpace(mesh, "Lagrange", 2))
u.vector()[:] = 1.0
File("output/u.xdmf") << u
+ XDMFFile("output/u.xdmf") << u
def test_save_3d_scalar(self):
mesh = UnitCubeMesh(8, 8, 8)
u = Function(FunctionSpace(mesh, "Lagrange", 2))
u.vector()[:] = 1.0
File("output/u.xdmf") << u
+ XDMFFile("output/u.xdmf") << u
def test_save_2d_vector(self):
mesh = UnitSquareMesh(16, 16)
@@ -66,6 +72,7 @@
c = Constant((1.0, 2.0))
u.interpolate(c)
File("output/u_2dv.xdmf") << u
+ XDMFFile("output/u.xdmf") << u
def test_save_3d_vector(self):
mesh = UnitCubeMesh(1, 1, 1)
@@ -73,6 +80,7 @@
c = Constant((1.0, 2.0, 3.0))
u.interpolate(c)
File("output/u_3Dv.xdmf") << u
+ XDMFFile("output/u.xdmf") << u
def test_save_3d_vector_series(self):
mesh = UnitCubeMesh(8, 8, 8)
@@ -87,18 +95,32 @@
u.vector()[:] = 3.0
file << (u, 0.3)
+ del file
+
+ file = XDMFFile("output/u_3D.xdmf")
+
+ u.vector()[:] = 1.0
+ file << (u, 0.1)
+
+ u.vector()[:] = 2.0
+ file << (u, 0.2)
+
+ u.vector()[:] = 3.0
+ file << (u, 0.3)
def test_save_2d_tensor(self):
mesh = UnitSquareMesh(16, 16)
u = Function(TensorFunctionSpace(mesh, "Lagrange", 2))
u.vector()[:] = 1.0
File("output/tensor.xdmf") << u
+ XDMFFile("output/tensor.xdmf") << u
def test_save_3d_tensor(self):
mesh = UnitCubeMesh(8, 8, 8)
u = Function(TensorFunctionSpace(mesh, "Lagrange", 2))
u.vector()[:] = 1.0
File("output/u.xdmf") << u
+ XDMFFile("output/u.xdmf") << u
class XDMF_MeshFunction_Output(unittest.TestCase):
"""Test output of Meshes to XDMF files"""
@@ -110,6 +132,7 @@
for cell in cells(mesh):
mf[cell] = cell.index()
File("output/mf_1D.xdmf") << mf
+ XDMFFile("output/mf_1D.xdmf") << mf
def test_save_2D_cell_function(self):
mesh = UnitSquareMesh(32, 32)
@@ -117,6 +140,7 @@
for cell in cells(mesh):
mf[cell] = cell.index()
File("output/mf_2D.xdmf") << mf
+ XDMFFile("output/mf_2D.xdmf") << mf
def test_save_3D_cell_function(self):
mesh = UnitCubeMesh(8, 8, 8)
@@ -124,6 +148,7 @@
for cell in cells(mesh):
mf[cell] = cell.index()
File("output/mf_3D.xdmf") << mf
+ XDMFFile("output/mf_3D.xdmf") << mf
def test_save_2D_facet_function(self):
mesh = UnitSquareMesh(32, 32)
@@ -131,6 +156,7 @@
for facet in facets(mesh):
mf[facet] = facet.index()
File("output/mf_facet_2D.xdmf") << mf
+ XDMFFile("output/mf_facet_2D.xdmf") << mf
def test_save_3D_facet_function(self):
mesh = UnitCubeMesh(8, 8, 8)
@@ -138,6 +164,7 @@
for facet in facets(mesh):
mf[facet] = facet.index()
File("output/mf_facet_3D.xdmf") << mf
+ XDMFFile("output/mf_facet_3D.xdmf") << mf
def test_save_3D_edge_function(self):
mesh = UnitCubeMesh(8, 8, 8)
@@ -145,6 +172,7 @@
for edge in edges(mesh):
mf[edge] = edge.index()
File("output/mf_edge_3D.xdmf") << mf
+ XDMFFile("output/mf_edge_3D.xdmf") << mf
def test_save_2D_vertex_function(self):
mesh = UnitSquareMesh(32, 32)
@@ -152,6 +180,7 @@
for vertex in vertices(mesh):
mf[vertex] = vertex.index()
File("output/mf_vertex_2D.xdmf") << mf
+ XDMFFile("output/mf_vertex_2D.xdmf") << mf
def test_save_3D_vertex_function(self):
mesh = UnitCubeMesh(8, 8, 8)
@@ -159,6 +188,7 @@
for vertex in vertices(mesh):
mf[vertex] = vertex.index()
File("output/mf_vertex_3D.xdmf") << mf
+ XDMFFile("output/mf_vertex_3D.xdmf") << mf
if __name__ == "__main__":
unittest.main()
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