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[Launchpad Bug Tracker <1216843@xxxxxxxxxxxxxxxxxx>]

This bug was fixed in the package indicator-messages -
13.10.1+13.10.20130827.4-0ubuntu1

---------------
indicator-messages (13.10.1+13.10.20130827.4-0ubuntu1) saucy; urgency=low

  [ Ted Gould ]
  * Protect against invalid actions. (LP: #1216758)
  * Remove unused and slightly used dependencies.

  [ Lars Uebernickel ]
  * Fix bug #1216843 Remove all sources when an applications quits and
    don't show sources with a count of 0. (LP: #1216843)
  * test-client.py: flush GDBusConnection before (potentially) freeing
    it. (LP: #1217131)

  [ Ubuntu daily release ]
  * Automatic snapshot from revision 365
 -- Ubuntu daily release <ps-jenkins@xxxxxxxxxxxxxxxxxxx>   Tue, 27 Aug 2013 15:53:01 +0000

** Changed in: indicator-messages (Ubuntu)
       Status: Triaged => Fix Released

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https://bugs.launchpad.net/bugs/1216843

Title:
  some sources don't get cleared out of the indicator

Status in The Messaging Menu:
  Fix Committed
Status in “indicator-messages” package in Ubuntu:
  Fix Released

Bug description:
  Using current saucy (the converged codebase), sometimes I've tb boxes
  that stay in the menu without a count, after reading email, they even
  stay in there if I close my email client...

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