fenics team mailing list archive

[Johannes Ring <johannr@xxxxxxxxx>]

On Sun, Jun 27, 2010 at 1:13 AM, Douglas N Arnold <arnold@xxxxxxx> wrote:
> I have Ubuntu 10.04 (lucid).  The output you requested is below.
>
> : gibbs 501; cat /etc/issue
> Ubuntu 10.04 LTS \n \l
>
> : gibbs 502; dpkg -s libdolfin0
> Package: libdolfin0
> Status: install ok installed
> Priority: extra
> Section: libs
> Installed-Size: 3516
> Maintainer: Johannes Ring <johannr@xxxxxxxxx>
> Architecture: amd64
> Source: dolfin
> Version: 0.9.7-2~ppa1~lucid1
> Replaces: libdolfin
> Provides: libdolfin
> Depends: ufc (>= 1.2.0), python-ffc (>= 0.7.0), python-viper (>= 0.4.2),
> libamd2.2.0 (>= 1:3.4.0), libarpack2 (>= 2.1+parpack96.dfsg), libblas3gf |
> libblas.so.3gf | libatlas3gf-base, libboost-filesystem1.40.0 (>= 1.40.0-1),
> libboost-program-options1.40.0 (>= 1.40.0-1), libc6 (>= 2.4), libcamd2.2.0
> (>= 1:3.4.0), libccolamd2.7.1 (>= 1:3.4.0), libcgal4, libcholmod1.7.1 (>=
> 1:3.4.0), libcolamd2.7.1 (>= 1:3.4.0), libgcc1 (>= 1:4.1.1), liblapack3gf |
> liblapack.so.3gf | libatlas3gf-base, libopenmpi1.3, libparmetis3.1,
> libpetsc3.0.0, libslepc3.0.0, libstdc++6 (>= 4.4.0), libumfpack5.4.0 (>=
> 1:3.4.0), libx11-6, libxml2 (>= 2.7.4), zlib1g (>= 1:1.1.4)
> Suggests: dolfin-doc, libdolfin0-dbg, python-pydolfin0
> Conflicts: libdolfin
> Description: shared libraries for DOLFIN
>  DOLFIN is the C++/Python interface of FEniCS, providing a consistent PSE
>  (Problem Solving Environment) for ordinary and partial differential
> equations.
>  .
>  This package contains the shared libraries.
> Homepage: http://www.fenics.org/wiki/DOLFIN
> Original-Maintainer: Debian Scientific Computing Team
> <pkg-scicomp-devel@xxxxxxxxxxxxxxxxxxxxxxx>
> : gibbs 503; dpkg -s python-ufc
> Package: python-ufc
> Status: install ok installed
> Priority: extra
> Section: python
> Installed-Size: 316
> Maintainer: Johannes Ring <johannr@xxxxxxxxx>
> Architecture: amd64
> Source: ufc
> Version: 1.4.0-2~ppa1~karmic1

It seems that UFC hasn't been upgraded yet. Try to run

  sudo apt-get upgrade

and see if that helps. If not, try instead

  sudo apt-get dist-upgrade

Please let me know if this fixes your issue.

Johannes

> Depends: ufc (= 1.4.0-2~ppa1~karmic1), python (<< 2.7), python (>= 2.6),
> python-central (>= 0.6.11), libc6 (>= 2.4), libgcc1 (>= 1:4.1.1), libstdc++6
> (>= 4.1.1)
> Description: unified code generation interface for form-compilers
>  UFC (Unified Form-assembly Code) is a unified framework for finite element
>  assembly. More precisely, it defines a fixed interface for communicating
> low
>  level routines (functions) for evaluating and assembling finite element
>  variational forms. The UFC interface consists of a single header file ufc.h
>  that specifies a C++ interface that must be implemented by code that
> complies
>  with the UFC specification. Examples of form compilers that support the UFC
>  interface are FFC and SyFi.
>  .
>  This package contains the Python bindings for UFC.
> Homepage: http://www.fenics.org/wiki/UFC
> Original-Maintainer: Debian Scientific Computing Team
> <pkg-scicomp-devel@xxxxxxxxxxxxxxxxxxxxxxx>
> Python-Version: 2.6
> : gibbs 504; python demo.py
> Calling FFC just-in-time (JIT) compiler, this may take some time.
> Traceback (most recent call last):
>  File "demo.py", line 24, in <module>
>    V = FunctionSpace(mesh, "CG", 1)
>  File "/usr/lib/python2.6/dist-packages/dolfin/function/functionspace.py",
> line 226, in __init__
>    FunctionSpaceBase.__init__(self, mesh, element)
>  File "/usr/lib/python2.6/dist-packages/dolfin/function/functionspace.py",
> line 44, in __init__
>    ufc_element, ufc_dofmap = jit(self._ufl_element)
>  File "/usr/lib/python2.6/dist-packages/dolfin/compilemodules/jit.py", line
> 44, in mpi_jit
>    return local_jit(*args, **kwargs)
>  File "/usr/lib/python2.6/dist-packages/dolfin/compilemodules/jit.py", line
> 103, in jit
>    return jit_compile(form, parameters=p, common_cell=common_cell)
>  File "/usr/lib/python2.6/dist-packages/ffc/jitcompiler.py", line 56, in jit
>    return jit_element(object, parameters)
>  File "/usr/lib/python2.6/dist-packages/ffc/jitcompiler.py", line 135, in
> jit_element
>    (compiled_form, module, form_data) = jit_form(form, parameters)
>  File "/usr/lib/python2.6/dist-packages/ffc/jitcompiler.py", line 107, in
> jit_form
>    cache_dir = cache_dir)
>  File "/usr/lib/python2.6/dist-packages/ufc_utils/build.py", line 53, in
> build_ufc_module
>    (cpp_path, swig_path) = configure_instant()
>  File "/usr/lib/python2.6/dist-packages/ufc_utils/build.py", line 96, in
> configure_instant
>    """ % ufc.__swigversion__
> OSError: The python extension module of UFC was not compiled with the
> present version of swig.
> Install swig version 1.3.36 or recompiled UFC with present swig
>
>
>
>
>
> On 06/26/2010 05:44 PM, Johannes Ring wrote:
>>
>> Hi Douglas,
>>
>> Which version of Ubuntu do you have? Could you also give me the output
>> of these two commands:
>>
>>   dpkg -s libdolfin0
>>   dpkg -s python-ufc
>>
>> Thanks,
>>
>> Johannes
>>
>> On Saturday, June 26, 2010, Douglas N Arnold<arnold@xxxxxxx>  wrote:
>>>
>>> The Ubuntu packages don't seem to work anymore.  After a fresh
>>> download with "apt-get install fenics" following the instructions at the
>>> top of http://www.fenics.org/wiki/Download
>>> the packages seem to install OK, but when I try to run, e.g., the poisson
>>> demo.py, I get a complaint about a swig version mismatch.
>>>
>>> python /usr/share/doc/dolfin-doc/demo/pde/poisson/python/demo.py
>>> Calling FFC just-in-time (JIT) compiler, this may take some time.
>>> Traceback (most recent call last):
>>>   File "/usr/share/doc/dolfin-doc/demo/pde/poisson/python/demo.py", line
>>> 24, in<module>
>>>      V = FunctionSpace(mesh, "CG", 1)
>>>   File
>>> "/usr/lib/python2.6/dist-packages/dolfin/function/functionspace.py", line
>>> 226, in __init__
>>>     FunctionSpaceBase.__init__(self, mesh, element)
>>>   File
>>> "/usr/lib/python2.6/dist-packages/dolfin/function/functionspace.py", line
>>> 44, in __init__
>>>     ufc_element, ufc_dofmap = jit(self._ufl_element)
>>>   File "/usr/lib/python2.6/dist-packages/dolfin/compilemodules/jit.py",
>>> line 44, in mpi_jit
>>>     return local_jit(*args, **kwargs)
>>>   File "/usr/lib/python2.6/dist-packages/dolfin/compilemodules/jit.py",
>>> line 103, in jit
>>>     return jit_compile(form, parameters=p, common_cell=common_cell)
>>>   File "/usr/lib/python2.6/dist-packages/ffc/jitcompiler.py", line 56, in
>>> jit
>>>     return jit_element(object, parameters)
>>>   File "/usr/lib/python2.6/dist-packages/ffc/jitcompiler.py", line 135,
>>> in jit_element
>>>     (compiled_form, module, form_data) = jit_form(form, parameters)
>>>   File "/usr/lib/python2.6/dist-packages/ffc/jitcompiler.py", line 107,
>>> in jit_form
>>>     cache_dir = cache_dir)
>>>   File "/usr/lib/python2.6/dist-packages/ufc_utils/build.py", line 53, in
>>> build_ufc_module
>>>     (cpp_path, swig_path) = configure_instant()
>>>   File "/usr/lib/python2.6/dist-packages/ufc_utils/build.py", line 96, in
>>> configure_instant
>>>     """ % ufc.__swigversion__
>>> OSError: The python extension module of UFC was not compiled with the
>>> present version of swig.
>>> Install swig version 1.3.36 or recompiled UFC with present swig
>>>
>>> _______________________________________________
>>> Mailing list: https://launchpad.net/~fenics
>>> Post to     : fenics@xxxxxxxxxxxxxxxxxxx
>>> Unsubscribe : https://launchpad.net/~fenics
>>> More help   : https://help.launchpad.net/ListHelp
>>>
>>
>
>