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*** This bug is a duplicate of bug 174759 ***
    https://bugs.launchpad.net/bugs/174759

the workaround :

adding : 
-XX:CompileCommand=exclude,org/eclipse/core/internal/dtree/DataTreeNode,forwardDeltaWith
-XX:CompileCommand=exclude,org/eclipse/jdt/internal/compiler/lookup/ParameterizedMethodBinding,<init>

to eclipse.ini

seems to work for me on Ubuntu Gutsy 8.04 (32bit)

-- 
eclipse crashes in libpthread while compiling java
https://bugs.launchpad.net/bugs/224297
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Status in “sun-java6” source package in Ubuntu: New

Bug description:
Binary package hint: sun-java6-jdk

SIGSEGV in native code crashes the JVM. Problem happens frequently and reproducably when compiling larger projects
with the internal eclipse java compiler in background compiling mode ("Project > build automatically").
Problem showed up immediately after upgrading to Hardy. The same ECLIPSE installation on the current java-6 package
in Gutsy runs without problems.

Ubuntu 8.04
sun-java6-jdk    6-06-0ubuntu1
libc6                  2.7-10ubuntu3

Running a Eclipse 3.3.2 installation updated (per update manager) to current stable release level.
eclipse.buildId=M20080221-1800

Notably, all dumps in all cases show the identical stack frames:
V  [libjvm.so+0x25665c]
V  [libjvm.so+0x255bb5]
V  [libjvm.so+0x2a2acd]
V  [libjvm.so+0x29f950]
V  [libjvm.so+0x2471e9]
V  [libjvm.so+0x2a6e3a]
V  [libjvm.so+0x2a6846]
V  [libjvm.so+0x5b617d]
V  [libjvm.so+0x4fe219]
C  [libpthread.so.0+0x54fb]