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[Bug 721066] Re: JHelioviewer fatal error outside java virtual machine in native code : SIGSEGV (0xb) at pc=0x05b89edb, pid=5959, tid=3029834608

To: openjdk@xxxxxxxxxxxxxxxxxxx
From: Keith Hughitt <keith.hughitt@xxxxxxxx>
Date: Fri, 16 Mar 2012 18:12:59 -0000
Reply-to: Bug 721066 <721066@xxxxxxxxxxxxxxxxxx>
Sender: bounces@xxxxxxxxxxxxx
Can confirm the problem in Ubuntu 11.10 32-bit:

2012-03-16 14:06:33,232 [LoadNewMovie] INFO  root - Connect to http://helioviewer.nascom.nasa.gov/api/index.php?action=getJPX&observatory=SDO&instrument=AIA&detector=AIA&measurement=171&startTime=2012-03-15T17:28:48Z&endTime=2012-03-16T17:28:48Z&cadence=1800&jpip=true&verbose=true&linked=true
ERROR: java.io.EOFException: EOF reached before read 940 bytes
ERROR: 	at org.helioviewer.viewmodel.view.jp2view.io.jpip.JPIPDataInputStream.readSegment(JPIPDataInputStream.java:142)
ERROR: 	at org.helioviewer.viewmodel.view.jp2view.io.jpip.JPIPSocket.receive(JPIPSocket.java:210)
ERROR: 	at org.helioviewer.viewmodel.view.jp2view.kakadu.KakaduUtils.downloadInitialData(KakaduUtils.java:114)
ERROR: 	at org.helioviewer.viewmodel.view.jp2view.JP2Image.initRemote(JP2Image.java:231)
ERROR: 	at org.helioviewer.viewmodel.view.jp2view.JP2Image.<init>(JP2Image.java:178)
ERROR: 	at org.helioviewer.viewmodel.view.ViewHelper.loadView(ViewHelper.java:512)
ERROR: 	at org.helioviewer.viewmodel.view.ViewHelper.loadView(ViewHelper.java:469)
ERROR: 	at org.helioviewer.jhv.io.APIRequestManager.newLoad(APIRequestManager.java:312)
ERROR: 	at org.helioviewer.jhv.io.APIRequestManager.requestData(APIRequestManager.java:241)
ERROR: 	at org.helioviewer.jhv.io.APIRequestManager.loadImageSeries(APIRequestManager.java:176)
ERROR: 	at org.helioviewer.jhv.io.APIRequestManager.requestAndOpenRemoteFile(APIRequestManager.java:346)
ERROR: 	at org.helioviewer.jhv.gui.dialogs.ObservationDialog$3.run(ObservationDialog.java:293)
ERROR: 	at java.lang.Thread.run(Thread.java:679)
ERROR: java.io.IOException: Unable to read all data, data bin is not complete
ERROR: 	at org.helioviewer.viewmodel.view.jp2view.kakadu.KakaduUtils.downloadInitialData(KakaduUtils.java:132)
ERROR: 	at org.helioviewer.viewmodel.view.jp2view.JP2Image.initRemote(JP2Image.java:231)
ERROR: 	at org.helioviewer.viewmodel.view.jp2view.JP2Image.<init>(JP2Image.java:178)
ERROR: 	at org.helioviewer.viewmodel.view.ViewHelper.loadView(ViewHelper.java:512)
ERROR: 	at org.helioviewer.viewmodel.view.ViewHelper.loadView(ViewHelper.java:469)
ERROR: 	at org.helioviewer.jhv.io.APIRequestManager.newLoad(APIRequestManager.java:312)
ERROR: 	at org.helioviewer.jhv.io.APIRequestManager.requestData(APIRequestManager.java:241)
ERROR: 	at org.helioviewer.jhv.io.APIRequestManager.loadImageSeries(APIRequestManager.java:176)
ERROR: 	at org.helioviewer.jhv.io.APIRequestManager.requestAndOpenRemoteFile(APIRequestManager.java:346)
ERROR: 	at org.helioviewer.jhv.gui.dialogs.ObservationDialog$3.run(ObservationDialog.java:293)
ERROR: 	at java.lang.Thread.run(Thread.java:679)
ERROR: java.io.EOFException: EOF reached before read 940 bytes
ERROR: 	at org.helioviewer.viewmodel.view.jp2view.io.jpip.JPIPDataInputStream.readSegment(JPIPDataInputStream.java:142)
ERROR: 	at org.helioviewer.viewmodel.view.jp2view.io.jpip.JPIPSocket.receive(JPIPSocket.java:210)
ERROR: 	at org.helioviewer.viewmodel.view.jp2view.kakadu.KakaduUtils.downloadInitialData(KakaduUtils.java:114)
ERROR: 	at org.helioviewer.viewmodel.view.jp2view.JP2Image.initRemote(JP2Image.java:231)
ERROR: 	at org.helioviewer.viewmodel.view.jp2view.JP2Image.<init>(JP2Image.java:178)
ERROR: 	at org.helioviewer.viewmodel.view.ViewHelper.loadView(ViewHelper.java:512)
ERROR: 	at org.helioviewer.viewmodel.view.ViewHelper.loadView(ViewHelper.java:469)
ERROR: 	at org.helioviewer.jhv.io.APIRequestManager.newLoad(APIRequestManager.java:312)
ERROR: 	at org.helioviewer.jhv.io.APIRequestManager.requestData(APIRequestManager.java:241)
ERROR: 	at org.helioviewer.jhv.io.APIRequestManager.loadImageSeries(APIRequestManager.java:176)
ERROR: 	at org.helioviewer.jhv.io.APIRequestManager.requestAndOpenRemoteFile(APIRequestManager.java:346)
ERROR: 	at org.helioviewer.jhv.gui.dialogs.ObservationDialog$3.run(ObservationDialog.java:293)
ERROR: 	at java.lang.Thread.run(Thread.java:679)
ERROR: java.io.IOException: Unable to read all data, data bin is not complete
ERROR: 	at org.helioviewer.viewmodel.view.jp2view.kakadu.KakaduUtils.downloadInitialData(KakaduUtils.java:132)
ERROR: 	at org.helioviewer.viewmodel.view.jp2view.JP2Image.initRemote(JP2Image.java:231)
ERROR: 	at org.helioviewer.viewmodel.view.jp2view.JP2Image.<init>(JP2Image.java:178)
ERROR: 	at org.helioviewer.viewmodel.view.ViewHelper.loadView(ViewHelper.java:512)
ERROR: 	at org.helioviewer.viewmodel.view.ViewHelper.loadView(ViewHelper.java:469)
ERROR: 	at org.helioviewer.jhv.io.APIRequestManager.newLoad(APIRequestManager.java:312)
ERROR: 	at org.helioviewer.jhv.io.APIRequestManager.requestData(APIRequestManager.java:241)
ERROR: 	at org.helioviewer.jhv.io.APIRequestManager.loadImageSeries(APIRequestManager.java:176)
ERROR: 	at org.helioviewer.jhv.io.APIRequestManager.requestAndOpenRemoteFile(APIRequestManager.java:346)
ERROR: 	at org.helioviewer.jhv.gui.dialogs.ObservationDialog$3.run(ObservationDialog.java:293)
ERROR: 	at java.lang.Thread.run(Thread.java:679)
ERROR: java.io.EOFException: EOF reached before read 940 bytes
ERROR: 	at org.helioviewer.viewmodel.view.jp2view.io.jpip.JPIPDataInputStream.readSegment(JPIPDataInputStream.java:142)
ERROR: 	at org.helioviewer.viewmodel.view.jp2view.io.jpip.JPIPSocket.receive(JPIPSocket.java:210)
ERROR: 	at org.helioviewer.viewmodel.view.jp2view.kakadu.KakaduUtils.downloadInitialData(KakaduUtils.java:114)
ERROR: 	at org.helioviewer.viewmodel.view.jp2view.JP2Image.initRemote(JP2Image.java:231)
ERROR: 	at org.helioviewer.viewmodel.view.jp2view.JP2Image.<init>(JP2Image.java:178)
ERROR: 	at org.helioviewer.viewmodel.view.ViewHelper.loadView(ViewHelper.java:512)
ERROR: 	at org.helioviewer.viewmodel.view.ViewHelper.loadView(ViewHelper.java:469)
ERROR: 	at org.helioviewer.jhv.io.APIRequestManager.newLoad(APIRequestManager.java:312)
ERROR: 	at org.helioviewer.jhv.io.APIRequestManager.requestData(APIRequestManager.java:241)
ERROR: 	at org.helioviewer.jhv.io.APIRequestManager.loadImageSeries(APIRequestManager.java:176)
ERROR: 	at org.helioviewer.jhv.io.APIRequestManager.requestAndOpenRemoteFile(APIRequestManager.java:346)
ERROR: 	at org.helioviewer.jhv.gui.dialogs.ObservationDialog$3.run(ObservationDialog.java:293)
ERROR: 	at java.lang.Thread.run(Thread.java:679)
ERROR: java.io.IOException: Unable to read all data, data bin is not complete
ERROR: 	at org.helioviewer.viewmodel.view.jp2view.kakadu.KakaduUtils.downloadInitialData(KakaduUtils.java:132)
ERROR: 	at org.helioviewer.viewmodel.view.jp2view.JP2Image.initRemote(JP2Image.java:231)
ERROR: 	at org.helioviewer.viewmodel.view.jp2view.JP2Image.<init>(JP2Image.java:178)
ERROR: 	at org.helioviewer.viewmodel.view.ViewHelper.loadView(ViewHelper.java:512)
ERROR: 	at org.helioviewer.viewmodel.view.ViewHelper.loadView(ViewHelper.java:469)
ERROR: 	at org.helioviewer.jhv.io.APIRequestManager.newLoad(APIRequestManager.java:312)
ERROR: 	at org.helioviewer.jhv.io.APIRequestManager.requestData(APIRequestManager.java:241)
ERROR: 	at org.helioviewer.jhv.io.APIRequestManager.loadImageSeries(APIRequestManager.java:176)
ERROR: 	at org.helioviewer.jhv.io.APIRequestManager.requestAndOpenRemoteFile(APIRequestManager.java:346)
ERROR: 	at org.helioviewer.jhv.gui.dialogs.ObservationDialog$3.run(ObservationDialog.java:293)
ERROR: 	at java.lang.Thread.run(Thread.java:679)
ERROR: java.io.EOFException: EOF reached before read 940 bytes
ERROR: 	at org.helioviewer.viewmodel.view.jp2view.io.jpip.JPIPDataInputStream.readSegment(JPIPDataInputStream.java:142)
ERROR: 	at org.helioviewer.viewmodel.view.jp2view.io.jpip.JPIPSocket.receive(JPIPSocket.java:210)
ERROR: 	at org.helioviewer.viewmodel.view.jp2view.kakadu.KakaduUtils.downloadInitialData(KakaduUtils.java:114)
ERROR: 	at org.helioviewer.viewmodel.view.jp2view.JP2Image.initRemote(JP2Image.java:231)
ERROR: 	at org.helioviewer.viewmodel.view.jp2view.JP2Image.<init>(JP2Image.java:178)
ERROR: 	at org.helioviewer.viewmodel.view.ViewHelper.loadView(ViewHelper.java:512)
ERROR: 	at org.helioviewer.viewmodel.view.ViewHelper.loadView(ViewHelper.java:469)
ERROR: 	at org.helioviewer.jhv.io.APIRequestManager.newLoad(APIRequestManager.java:312)
ERROR: 	at org.helioviewer.jhv.io.APIRequestManager.requestData(APIRequestManager.java:241)
ERROR: 	at org.helioviewer.jhv.io.APIRequestManager.loadImageSeries(APIRequestManager.java:176)
ERROR: 	at org.helioviewer.jhv.io.APIRequestManager.requestAndOpenRemoteFile(APIRequestManager.java:346)
ERROR: 	at org.helioviewer.jhv.gui.dialogs.ObservationDialog$3.run(ObservationDialog.java:293)
ERROR: 	at java.lang.Thread.run(Thread.java:679)
ERROR: java.io.IOException: Unable to read all data, data bin is not complete
ERROR: 	at org.helioviewer.viewmodel.view.jp2view.kakadu.KakaduUtils.downloadInitialData(KakaduUtils.java:132)
ERROR: 	at org.helioviewer.viewmodel.view.jp2view.JP2Image.initRemote(JP2Image.java:231)
ERROR: 	at org.helioviewer.viewmodel.view.jp2view.JP2Image.<init>(JP2Image.java:178)
ERROR: 	at org.helioviewer.viewmodel.view.ViewHelper.loadView(ViewHelper.java:512)
ERROR: 	at org.helioviewer.viewmodel.view.ViewHelper.loadView(ViewHelper.java:469)
ERROR: 	at org.helioviewer.jhv.io.APIRequestManager.newLoad(APIRequestManager.java:312)
ERROR: 	at org.helioviewer.jhv.io.APIRequestManager.requestData(APIRequestManager.java:241)
ERROR: 	at org.helioviewer.jhv.io.APIRequestManager.loadImageSeries(APIRequestManager.java:176)
ERROR: 	at org.helioviewer.jhv.io.APIRequestManager.requestAndOpenRemoteFile(APIRequestManager.java:346)
ERROR: 	at org.helioviewer.jhv.gui.dialogs.ObservationDialog$3.run(ObservationDialog.java:293)
ERROR: 	at java.lang.Thread.run(Thread.java:679)
ERROR: java.io.EOFException: EOF reached before read 940 bytes
ERROR: 	at org.helioviewer.viewmodel.view.jp2view.io.jpip.JPIPDataInputStream.readSegment(JPIPDataInputStream.java:142)
ERROR: 	at org.helioviewer.viewmodel.view.jp2view.io.jpip.JPIPSocket.receive(JPIPSocket.java:210)
ERROR: 	at org.helioviewer.viewmodel.view.jp2view.kakadu.KakaduUtils.downloadInitialData(KakaduUtils.java:114)
ERROR: 	at org.helioviewer.viewmodel.view.jp2view.JP2Image.initRemote(JP2Image.java:231)
ERROR: 	at org.helioviewer.viewmodel.view.jp2view.JP2Image.<init>(JP2Image.java:178)
ERROR: 	at org.helioviewer.viewmodel.view.ViewHelper.loadView(ViewHelper.java:512)
ERROR: 	at org.helioviewer.viewmodel.view.ViewHelper.loadView(ViewHelper.java:469)
ERROR: 	at org.helioviewer.jhv.io.APIRequestManager.newLoad(APIRequestManager.java:312)
ERROR: 	at org.helioviewer.jhv.io.APIRequestManager.requestData(APIRequestManager.java:241)
ERROR: 	at org.helioviewer.jhv.io.APIRequestManager.loadImageSeries(APIRequestManager.java:176)
ERROR: 	at org.helioviewer.jhv.io.APIRequestManager.requestAndOpenRemoteFile(APIRequestManager.java:346)
ERROR: 	at org.helioviewer.jhv.gui.dialogs.ObservationDialog$3.run(ObservationDialog.java:293)
ERROR: 	at java.lang.Thread.run(Thread.java:679)
ERROR: java.io.IOException: Unable to read all data, data bin is not complete
ERROR: 	at org.helioviewer.viewmodel.view.jp2view.kakadu.KakaduUtils.downloadInitialData(KakaduUtils.java:132)
ERROR: 	at org.helioviewer.viewmodel.view.jp2view.JP2Image.initRemote(JP2Image.java:231)
ERROR: 	at org.helioviewer.viewmodel.view.jp2view.JP2Image.<init>(JP2Image.java:178)
ERROR: 	at org.helioviewer.viewmodel.view.ViewHelper.loadView(ViewHelper.java:512)
ERROR: 	at org.helioviewer.viewmodel.view.ViewHelper.loadView(ViewHelper.java:469)
ERROR: 	at org.helioviewer.jhv.io.APIRequestManager.newLoad(APIRequestManager.java:312)
ERROR: 	at org.helioviewer.jhv.io.APIRequestManager.requestData(APIRequestManager.java:241)
ERROR: 	at org.helioviewer.jhv.io.APIRequestManager.loadImageSeries(APIRequestManager.java:176)
ERROR: 	at org.helioviewer.jhv.io.APIRequestManager.requestAndOpenRemoteFile(APIRequestManager.java:346)
ERROR: 	at org.helioviewer.jhv.gui.dialogs.ObservationDialog$3.run(ObservationDialog.java:293)
ERROR: 	at java.lang.Thread.run(Thread.java:679)
#
# A fatal error has been detected by the Java Runtime Environment:
#
#  SIGSEGV (0xb) at pc=0x69a8e64f, pid=19732, tid=1630202736
#
# JRE version: 6.0_23-b23
# Java VM: OpenJDK Server VM (20.0-b11 mixed mode linux-x86 )
# Derivative: IcedTea6 1.11pre
# Distribution: Ubuntu 11.10, package 6b23~pre11-0ubuntu1.11.10.2
# Problematic frame:
# C  [libkdu_jni-linux-x86-32-glibc-2-7.so+0x19364f]  kdu_codestream::open_tile(kdu_coords, kdu_thread_env*)+0x4f
#
# An error report file with more information is saved as:
# /home/.../hs_err_pid19732.log
#
# If you would like to submit a bug report, please include
# instructions how to reproduce the bug and visit:
#   https://bugs.launchpad.net/ubuntu/+source/openjdk-6/
# The crash happened outside the Java Virtual Machine in native code.
# See problematic frame for where to report the bug.

-- 
You received this bug notification because you are a member of OpenJDK,
which is subscribed to openjdk-6 in Ubuntu.
https://bugs.launchpad.net/bugs/721066

Title:
  JHelioviewer fatal error outside java virtual machine in native code :
  SIGSEGV (0xb) at pc=0x05b89edb, pid=5959, tid=3029834608

Status in “openjdk-6” package in Ubuntu:
  New

Bug description:
  Ubuntu 10.10 Maverick Meerkat - released in October 2010 and supported until April 2012.
  JHelioviewer is launched by command line of:
  java -Xmx1000m -jar JHelioviewer.jar

To manage notifications about this bug go to:
https://bugs.launchpad.net/ubuntu/+source/openjdk-6/+bug/721066/+subscriptions
References

[Bug 721066] [NEW] JHelioviewer fatal error outside java virtual machine in native code : SIGSEGV (0xb) at pc=0x05b89edb, pid=5959, tid=3029834608
From: Gregory Long, 2011-02-18