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Message #00327
[Branch ~oship-dev/oship/oship-dse] Rev 251: Corrected typos in DSE not installed message.
------------------------------------------------------------
revno: 251
committer: Tim Cook <timothywayne.cook@xxxxxxxxx>
branch nick: oship-dse
timestamp: Sun 2009-08-23 16:38:38 -0300
message:
Corrected typos in DSE not installed message.
modified:
oship/src/oship/dsedemo.py
--
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https://code.launchpad.net/~oship-dev/oship/oship-dse
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=== modified file 'oship/src/oship/dsedemo.py'
--- oship/src/oship/dsedemo.py 2009-08-20 10:47:54 +0000
+++ oship/src/oship/dsedemo.py 2009-08-23 19:38:38 +0000
@@ -14,8 +14,8 @@
try:
import clips
except ImportError:
- print "\n\nYour Decision Support Engine has not been installed. Please see oship/src/oship/odcs/des/des.txt\n\n"
-
+ print "\n\n\nNOTICE!!!!!!: Your Decision Support Engine has not been installed. Please see oship/src/oship/docs/dse/dse.txt\n\n\n"
+
from zope.exceptions import DuplicationError
from zope.interface import Interface,implements
from zope.schema import Date,Int,TextLine
@@ -33,73 +33,73 @@
return value in [0,1,2,3]
-class dsedemo(grok.Application, grok.Container):
+class dsedemo(grok.Application, grok.Container):
"""
Decision Support Demo
"""
-
+
pass
class IImmunizationList(Interface):
-
+
keyId=TextLine(
title=_(u"Key ID"),
)
-
+
resultsText=TextLine(
title=_(u"Key ID"),
)
-
+
dob=Date(
title=_(u"DOB"),
description=_(u"Date of Birth"),
default=date.today()
)
-
+
examDate=Date(
title=_(u"Exam Date"),
description=_(u"Date of the examination."),
default=date.today()
)
-
+
hepatitisB=Int(
title=_(u"Hepatitis B"),
description=_(u"Hepatitis B vaccination"),
constraint=validNums,
default=0
)
-
+
tetravalent=Int(
title=_(u"tetravalent (DTP+Hib)"),
description=_(u"tetravalent (DTP+Hib) vaccination"),
constraint=validNums,
default=0
)
-
+
polio=Int(
title=_(u"Polio"),
description=_(u"Polio vaccination"),
constraint=validNums,
default=0
)
-
+
rotavirus=Int(
title=_(u"Rotavirus"),
description=_("Rotavirus vaccination"),
constraint=validNums,
default=0
)
-
-
+
+
class ImmunizationList(grok.Model):
"""A class for one examination for current immunization status."""
-
+
implements(IImmunizationList)
grok.context(dsedemo)
-
+
#setup an __init__ with defaults
- def __init__(self):
+ def __init__(self):
keyId=unicode(uuid.uuid4())
resultsText=u'No Results'
dob=date.today()
@@ -108,47 +108,47 @@
tetravalent=0
polio=0
rotavirus=0
-
-
+
+
class Index(grok.View):
grok.context(dsedemo)
-
+
def render(self):
try:
self.context['dsedemo'] = grok.Container() # demo container
except DuplicationError:
pass
-
+
self.redirect(self.application_url()+"/dsemain")
-
-# Main view
+
+# Main view
class DseMain(grok.View):
grok.context(dsedemo)
-
-class ImmunizationsForm1(grok.AddForm):
+
+class ImmunizationsForm1(grok.AddForm):
"""The IF/THEN Add Form"""
grok.context(dsedemo)
form_fields = grok.AutoFields(ImmunizationList)
-
+
#here we setup an alternate display form that has been customized from the original generic add form.
#the URL though is still to /immunizationsform1 NOT to inputform1
- template = grok.PageTemplateFile('dsedemo_templates/inputform1.pt')
-
+ template = grok.PageTemplateFile('dsedemo_templates/inputform1.pt')
+
@grok.action('Process')
def add(self, **data):
immlist = ImmunizationList()
self.applyData(immlist, **data)
self.context['dsedemo'][immlist.keyId] = immlist
-
-
-
+
+
+
class ResultsList1(grok.View):
"""The IF/THEN Process Results"""
-
+
grok.context(dsedemo)
-
+
def update(self):
# convert the form values to their proper types
self.examDate = datetime(*(time.strptime(self.request['form.examDate'], '%Y-%m-%d')[0:6]))
@@ -158,20 +158,20 @@
self.tetravalent = int(self.request['form.tetravalent'])
self.polio = int(self.request['form.polio'])
self.rotavirus = int(self.request['form.rotavirus'])
- self.resultstxt = u""
-
-
-
+ self.resultstxt = u""
+
+
+
# Hep B
if self.hepatitisB == 0: # any age
self.resultstxt += "<li>Needs Hepatitis B #1</li> "
-
+
elif self.age >= 30 and self.age < 120 and self.hepatitisB == 1:
self.resultstxt += "<li>Needs Hepatitis B #2</li> "
-
+
elif self.age >= 120 and self.age < 180 and self.hepatitisB == 2:
self.resultstxt += "<li>Needs Hepatitis B #3</li> "
-
+
# tetravalent (DTP+Hib)
if self.age > 60:
if self.age <= 60 and self.age < 120 and self.tetravalent == 0:
@@ -180,7 +180,7 @@
self.resultstxt += "<li>Needs Tetravalent (DTP+Hib) Dose #"+str(self.tetravalent+1)+"</li> "
elif self.age == 180 and self.tetravalent < 3:
self.resultstxt += "<li>Needs Tetravalent (DTP+Hib) Dose #"+str(self.tetravalent+1)+"</li> "
-
+
# polio
if self.age >= 60:
if self.age <= 60 and self.age < 120 and self.polio == 0:
@@ -189,51 +189,51 @@
self.resultstxt += "<li>Needs Polio Dose #"+str(self.polio+1)+"</li> "
elif self.age == 180 and self.polio < 3:
self.resultstxt += "<li>Needs Polio Dose #"+str(self.polio+1)+"</li> "
-
+
# rotavirus
if self.age >= 60:
if self.age < 90 and self.rotavirus == 0:
self.resultstxt += "<li>Needs Rotavirus Dose #1</li> "
elif self.age < 180 and self.rotavirus < 2:
self.resultstxt += "<li>Needs Rotavirus Dose #"+str(self.rotavirus+1)+"</li> "
-
-
+
+
# No Immunizations Needed at this time.
if self.resultstxt == "":
self.resultstxt = "<li>No Immunizations Needed at this time.</li>"
# age check
if self.age > 180:
self.resultstxt = "Sorry; this child is too old to assess with this application."
-
+
def render(self):
return u"<html><body><ul>This child is " +unicode(self.age)+ " days old and has these immunization needs: " + self.resultstxt+"</ul></body></html>"
-
-
-class ImmunizationsForm2(grok.AddForm):
+
+
+class ImmunizationsForm2(grok.AddForm):
"""The Inference Engine Add Form"""
-
+
grok.context(dsedemo)
form_fields = grok.AutoFields(ImmunizationList)
-
+
#here we setup an alternate display form that has been customized from the original generic add form.
#the URL though is still to /immunizationsform2 NOT to inputform2
- template = grok.PageTemplateFile('dsedemo_templates/inputform2.pt')
-
+ template = grok.PageTemplateFile('dsedemo_templates/inputform2.pt')
+
@grok.action('Process')
def add(self, **data):
immlist = ImmunizationList()
self.applyData(immlist, **data)
self.context['dsedemo'][immlist.keyId] = immlist
-
-
-
+
+
+
class ResultsList2(grok.View):
"""The Inference Engine Process Results"""
-
+
grok.context(dsedemo)
-
-
-
+
+
+
def update(self):
# convert the form values to their proper types
self.examDate = datetime(*(time.strptime(self.request['form.examDate'], '%Y-%m-%d')[0:6]))
@@ -243,28 +243,28 @@
self.tetravalent = int(self.request['form.tetravalent'])
self.polio = int(self.request['form.polio'])
self.rotavirus = int(self.request['form.rotavirus'])
- self.resultstxt = u""
-
+ self.resultstxt = u""
+
clips.Clear() # MUST issue a clear before any setup begins.
-
+
clips.DebugConfig.ActivationsWatched = True
"""
Since this demo is for developers we are going to print everything out to the console
"""
-
-
+
+
#build and fill the data template
- tmplt=clips.BuildTemplate("immunizations", """
- (slot age (type INTEGER))
- (slot HepB (type INTEGER))
- (slot tetra (type INTEGER))
- (slot polio (type INTEGER))
- (slot rota (type INTEGER))
+ tmplt=clips.BuildTemplate("immunizations", """
+ (slot age (type INTEGER))
+ (slot HepB (type INTEGER))
+ (slot tetra (type INTEGER))
+ (slot polio (type INTEGER))
+ (slot rota (type INTEGER))
""", "template for child immunizations")
-
-
+
+
immlist = clips.Fact(tmplt) # tell Python that this is a CLIPS Fact template
-
+
# assign the form data to the template
immlist.Slots['age'] = self.age
immlist.Slots['HepB'] = self.hepatitisB
@@ -274,35 +274,35 @@
# we need to reset the fact list on each pass. This also Asserts the first fact and insures the program will begin execution.
clips.Reset()
-
+
immlist.Assert() # assert the facts in the template
# Build the rules
ageRule = clips.BuildRule("age-rule", "(immunizations (age ?x&:(< 180 ?x)))", "(assert (too_old))", "The age Limit Rule.")
hepatitisB1Rule = clips.BuildRule("hepatitisB1-rule", "(immunizations (HepB ?x&:(= 0 ?x)))", "(assert (hepatitisB1))", "The HepatitisB Dose #1 Rule")
polio1Rule = clips.BuildRule("polio1-rule", "(immunizations (polio ?x&:(= 0 ?x)) (age ?age&:(>= ?age 60)))", "(assert (polio1))","The polio Dose #1 Rule")
-
+
print "\nThe Agenda is: "
clips.PrintAgenda()
-
+
clips.Run()
clips.SaveFacts("immlist.txt")
-
-
-
-
+
+
+
+
## Hep B
#if self.hepatitisB == 0: # any age
#self.resultstxt += "<li>Needs Hepatitis B #1</li> "
-
+
#elif self.age >= 30 and self.age < 120 and self.hepatitisB == 1:
#self.resultstxt += "<li>Needs Hepatitis B #2</li> "
-
+
#elif self.age >= 120 and self.age < 180 and self.hepatitisB == 2:
#self.resultstxt += "<li>Needs Hepatitis B #3</li> "
-
-
-
+
+
+
## tetravalent (DTP+Hib)
#if self.age > 60:
#if self.age <= 60 and self.age < 120 and self.tetravalent == 0:
@@ -319,22 +319,22 @@
#self.resultstxt += "<li>Needs Polio Dose #"+str(self.polio+1)+"</li> "
#elif self.age = 180 and self.polio < 3:
#self.resultstxt += "<li>Needs Polio Dose #"+str(self.polio+1)+"</li> "
-
+
## rotavirus
#if self.age >= 60:
#if self.age < 90 and self.rotavirus == 0:
#self.resultstxt += "<li>Needs Rotavirus Dose #1</li> "
#elif self.age < 180 and self.rotavirus < 2:
#self.resultstxt += "<li>Needs Rotavirus Dose #"+str(self.rotavirus+1)+"</li> "
-
-
+
+
## No Immunizations Needed at this time.
#if self.resultstxt == "":
#self.resultstxt = "<li>No Immunizations Needed at this time.</li>"
## age check
#if self.age > 180:
#self.resultstxt = "Sorry; this child is too old to assess with this application."
-
+
def render(self):
f=open("immlist.txt",'r')
for line in f.readlines():
@@ -343,43 +343,42 @@
return u"<html><body>This patient is " +unicode(self.age)+ " days old and cannot be evaluated with this application.</body></html>"
else:
self.resultstxt += "<li>"+ line +"</li>"
-
+
return u"<html><body><ul>This patient is " +unicode(self.age)+ " days old and has these immunization needs: " + self.resultstxt+"</ul></body></html>"
-
+
"""
Vaccination schedule from birth to 6 months (180 days) old [A](1),(2),(3)
Calculation of age:
Age in days [B] = Date of admission [C] – Date of birth [D]
-
+
Evaluation:
[E] = dose order of the vaccination already given (values = 0, 1, 2 or 3)
-
+
Actions:
[F] = dose order of the vaccination that is needed (values = 1, 2 or 3)
[G] = when the action is “no need for this specific vaccinationâ€
-
+
Vaccination type: Hepatitis B
IF (([B] < 30) AND ([E] = 0)) THEN ([F] = 1), ELSE = [G]
IF ((30 ≤ [B] < 120) AND ([E] < 2)) THEN ([F] = ([E] + 1)), ELSE = [G]
IF ((120 ≤ [B] < 180) AND ([E] < 3)) THEN ([F] = ([E] + 1)), ELSE = [G]
-
+
Vaccination types: tetravalent (DTP+Hib) and Polio
If ([B] < 60) THEN [G]
IF ((60 ≤ [B] < 120) AND ([E] = 0)) THEN ([F] = 1), ELSE = [G]
IF ((120 ≤ [B] < 180) AND ([E] < 2)) THEN ([F] = ([E] + 1)), ELSE = [G]
IF (([B] = 180) AND ([E] < 3)) THEN ([F] = ([E] + 1)), ELSE = [G]
-
+
Vaccination type: Rotavirus
If ([B] < 60) THEN [G]
IF ((60 ≤ [B] < 90) AND ([E] = 0)) THEN ([F] = 1), ELSE = [G]
IF ((90 ≤ [B] < 180) AND ([E] < 2)) THEN ([F] = ([E] + 1)), ELSE = [G]
-
+
Footnotes:
- (1) Those decision rules are based on WHO recommendations and may vary from country to country and within regions of the same country depending on national and local vaccination policies.
+ (1) Those decision rules are based on WHO recommendations and may vary from country to country and within regions of the same country depending on national and local vaccination policies.
(2) Based on WHO recommendations found on WHO and other related websites on July 7th, 2009 and subjected to change at any time.
- (3) This demo is supposed to act as a technical example of the implementation of decision support systems using OSHIP and should never be used as a decision-making tool for the vaccination recommendation of real cases.
-
+ (3) This demo is supposed to act as a technical example of the implementation of decision support systems using OSHIP and should never be used as a decision-making tool for the vaccination recommendation of real cases.
+
"""
-
\ No newline at end of file
