oship-dev team mailing list archive

[Tim Cook <timothywayne.cook@xxxxxxxxx>]

Hi Tarsis,

We use PyXB in OSHIP to create bindings for SDMX-HD and NHIN CONNECT.  I
suggest that you use it as well. http://pyxb.sourceforge.net/ It is a
great tool.  I have already created the bindings for the schemas. See:
http://www.mlhim.org/schemas/openehr/v1/schemas_python_binindings.tar.gz

(even if I did misspell the name).

If you need help integrating it into HKCR then let us know.

You can then do validation something like:

Python 2.6.5 (r265:79063, Apr 16 2010, 13:57:41) 
[GCC 4.4.3] on linux2
Type "help", "copyright", "credits" or "license" for more information.
>>> import archetype
>>> import pyxb.utils.domutils as domutils
>>> xml=file('openEHR-EHR-OBSERVATION.apgar.v1.xml').read()
>>> doc = domutils.StringToDOM(xml)
>>> doc
<pyxb.utils.saxdom.Document object at 0x2362dd0>

At this point you know it validated through the SAXparser.
Then you can use it as an instance to collect data, etc. if you like.
The are a number of examples on the PyXB site to demonstrate what you
can do with the documents.

HTH,
Tim

PS.Please use Reply-All so that the emails are archived for future
searches, etc.  This will help others that come along after us. 



On Mon, 2010-06-21 at 21:40 -0300, Tarsis Azevedo wrote:
> Hi Tim, i trying validate xml file with xsd files from milihm.org .
> This is my output:
> 
> 
> In [2]: archetype_file =
> open('/home/tarsis/XML-schema/xsds/Archetype.xsd', 'r')
> 
> 
> In [3]: archetype = lxml.etree.parse(archetype_file)
> 
> 
> In [4]: from lxml import etree
> 
> 
> In [5]: archetype = etree.parse(archetype_file)
> 
> 
> In [6]: archetype
> Out[6]: <lxml.etree._ElementTree object at 0x91f47ec>
> 
> 
> In [7]: archetype_file.close()
> 
> 
> In [8]: xsd =
> open('/home/tarsis/XML-schema/openEHR-EHR-ACTION.procedure.v1.xml',
> 'r')
> 
> 
> In [9]: xsd
> Out[9]: <open file
> '/home/tarsis/XML-schema/openEHR-EHR-ACTION.procedure.v1.xml', mode
> 'r' at 0x91ee930>
> 
> 
> In [10]: archetype
> Out[10]: <lxml.etree._ElementTree object at 0x91f47ec>
> 
> 
> In [11]: archetype_file 
> Out[11]: <closed file '/home/tarsis/XML-schema/xsds/Archetype.xsd',
> mode 'r' at 0x9088ca0>
> 
> 
> In [12]: archetype2 = etree.parse(xsd)
> 
> 
> In [13]: xsd.close()
> 
> 
> In [14]: schema = etree.XMLSchema(archetype)
> 
> 
> In [15]: schema.validate(archetype2)
> Out[15]: False
> 
> 
> This is the XSD i use to validate xmls?!
> 
> 
> Thanks
> Tarsis Figueredo Azevedo. 
> -------------------
> Linux User: #496982
> -------------------
> 
> "Any fool can write code that a computer can understand. Good
> programmers write code that humans can understand.
> 
> -Martin Fowler, Refactoring: Improving the Design of Existing Code"
> 
> 
> 2010/6/18 Tarsis Azevedo <tarsis.azevedo@xxxxxxxxx>
>         Ok Tim, excuse the delay. I will try with these.
>         
>         
>         Sorry,
>         
>         
>         [],
>         Tarsis Figueredo Azevedo. 
>         -------------------
>         Linux User: #496982
>         -------------------
>         
>         "Any fool can write code that a computer can understand. Good
>         programmers write code that humans can understand.
>         
>         -Martin Fowler, Refactoring: Improving the Design of Existing
>         Code"
>         
>         
>         2010/6/10 Tim Cook <timothywayne.cook@xxxxxxxxx>
>                 
>                 Hi Tarsis,
>                 
>                 The schemas are now on MLHIM.org. You can download
>                 them from the links
>                 below. They were validated with the W3C Schema
>                 validator at:
>                 http://www.w3.org/2001/03/webdata/xsv
>                 
>                 I believe that all of the includes are correct.
>                 
>                 Cheers,
>                 Tim
>                 
>                 The output is below:
>                 
>                 ==========================================================
>                 Attempt to load a schema document from
>                 http://www.mlhim.org/schemas/openehr/v1/BaseTypes.xsd
>                  (source: command line) for
>                   no namespace,
>                    succeeded
>                 
>                 ==========================================================
>                 Attempt to load a schema document from
>                 http://www.mlhim.org/schemas/openehr/v1/Template.xsd
>                  (source: command line) for
>                   no namespace,
>                    succeeded
>                 ==========================================================
>                 Schema resources involved
>                 
>                 Attempt to load a schema document from
>                 http://www.mlhim.org/schemas/openehr/v1/Composition.xsd
>                  (source: command line) for
>                   no namespace,
>                    succeeded
>                 
>                 Attempt to load a schema document from
>                 http://www.mlhim.org/schemas/openehr/v1/Content.xsd
>                  (source: include) for
>                   http://www.mlhim.org/schemas/openehr/v1,
>                    succeeded
>                 
>                 Attempt to load a schema document from
>                 http://www.mlhim.org/schemas/openehr/v1/Structure.xsd
>                  (source: include) for
>                   http://www.mlhim.org/schemas/openehr/v1,
>                    succeeded
>                 
>                 Attempt to load a schema document from
>                 http://www.mlhim.org/schemas/openehr/v1/BaseTypes.xsd
>                  (source: include) for
>                   http://www.mlhim.org/schemas/openehr/v1,
>                    succeeded
>                 ==================================================================
>                 Schema resources involved
>                 
>                 Attempt to load a schema document from
>                 http://www.mlhim.org/schemas/openehr/v1/OpenehrProfile.xsd
>                  (source: command line) for
>                   no namespace,
>                    succeeded
>                 
>                 Attempt to load a schema document from
>                 http://www.mlhim.org/schemas/openehr/v1/Archetype.xsd
>                  (source: include) for
>                   http://www.mlhim.org/schemas/openehr/v1,
>                    succeeded
>                 
>                 Attempt to load a schema document from
>                 http://www.mlhim.org/schemas/openehr/v1/Resource.xsd
>                  (source: include) for
>                   http://www.mlhim.org/schemas/openehr/v1,
>                    succeeded
>                 
>                 Attempt to load a schema document from
>                 http://www.mlhim.org/schemas/openehr/v1/BaseTypes.xsd
>                  (source: include) for
>                   http://www.mlhim.org/schemas/openehr/v1,
>                    succeeded
>                 ==================================================================
>                 Schema resources involved
>                 
>                 Attempt to load a schema document from
>                 http://www.mlhim.org/schemas/openehr/v1/Structure.xsd
>                  (source: command line) for
>                   no namespace,
>                    succeeded
>                 
>                 Attempt to load a schema document from
>                 http://www.mlhim.org/schemas/openehr/v1/BaseTypes.xsd
>                  (source: include) for
>                   http://www.mlhim.org/schemas/openehr/v1,
>                    succeeded
>                 ==================================================================
>                 Schema resources involved
>                 
>                 Attempt to load a schema document from
>                 http://www.mlhim.org/schemas/openehr/v1/Extract.xsd
>                  (source: command line) for
>                   no namespace,
>                    succeeded
>                 
>                 Attempt to load a schema document from
>                 http://www.mlhim.org/schemas/openehr/v1/Version.xsd
>                  (source: include) for
>                   http://www.mlhim.org/schemas/openehr/v1,
>                    succeeded
>                 
>                 Attempt to load a schema document from
>                 http://www.mlhim.org/schemas/openehr/v1/Composition.xsd
>                  (source: include) for
>                   http://www.mlhim.org/schemas/openehr/v1,
>                    succeeded
>                 
>                 Attempt to load a schema document from
>                 http://www.mlhim.org/schemas/openehr/v1/Content.xsd
>                  (source: include) for
>                   http://www.mlhim.org/schemas/openehr/v1,
>                    succeeded
>                 
>                 Attempt to load a schema document from
>                 http://www.mlhim.org/schemas/openehr/v1/Structure.xsd
>                  (source: include) for
>                   http://www.mlhim.org/schemas/openehr/v1,
>                    succeeded
>                 
>                 Attempt to load a schema document from
>                 http://www.mlhim.org/schemas/openehr/v1/BaseTypes.xsd
>                  (source: include) for
>                   http://www.mlhim.org/schemas/openehr/v1,
>                    succeeded
>                 ==================================================================
>                 Schema resources involved
>                 
>                 Attempt to load a schema document from
>                 http://www.mlhim.org/schemas/openehr/v1/Resource.xsd
>                  (source: command line) for
>                   no namespace,
>                    succeeded
>                 
>                 Attempt to load a schema document from
>                 http://www.mlhim.org/schemas/openehr/v1/BaseTypes.xsd
>                  (source: include) for
>                   http://www.mlhim.org/schemas/openehr/v1,
>                    succeeded
>                 ==================================================================
>                 
>                 Schema resources involved
>                 
>                 Attempt to load a schema document from
>                 http://www.mlhim.org/schemas/openehr/v1/Version.xsd
>                  (source: command line) for
>                   no namespace,
>                    succeeded
>                 
>                 Attempt to load a schema document from
>                 http://www.mlhim.org/schemas/openehr/v1/Composition.xsd
>                  (source: include) for
>                   http://www.mlhim.org/schemas/openehr/v1,
>                    succeeded
>                 
>                 Attempt to load a schema document from
>                 http://www.mlhim.org/schemas/openehr/v1/Content.xsd
>                  (source: include) for
>                   http://www.mlhim.org/schemas/openehr/v1,
>                    succeeded
>                 
>                 Attempt to load a schema document from
>                 http://www.mlhim.org/schemas/openehr/v1/Structure.xsd
>                  (source: include) for
>                   http://www.mlhim.org/schemas/openehr/v1,
>                    succeeded
>                 
>                 Attempt to load a schema document from
>                 http://www.mlhim.org/schemas/openehr/v1/BaseTypes.xsd
>                  (source: include) for
>                   http://www.mlhim.org/schemas/openehr/v1,
>                    succeeded
>                 
>                 ==================================================================
>                 Schema resources involved
>                 
>                 Attempt to load a schema document from
>                 http://www.mlhim.org/schemas/openehr/v1/Archetype.xsd
>                  (source: command line) for
>                   no namespace,
>                    succeeded
>                 
>                 Attempt to load a schema document from
>                 http://www.mlhim.org/schemas/openehr/v1/Resource.xsd
>                  (source: include) for
>                   http://www.mlhim.org/schemas/openehr/v1,
>                    succeeded
>                 
>                 Attempt to load a schema document from
>                 http://www.mlhim.org/schemas/openehr/v1/BaseTypes.xsd
>                  (source: include) for
>                   http://www.mlhim.org/schemas/openehr/v1,
>                    succeeded
>                 ==================================================================
>                 
>                 Schema resources involved
>                 
>                 Attempt to load a schema document from
>                 http://www.mlhim.org/schemas/openehr/v1/Content.xsd
>                  (source: command line) for
>                   no namespace,
>                    succeeded
>                 
>                 Attempt to load a schema document from
>                 http://www.mlhim.org/schemas/openehr/v1/Structure.xsd
>                  (source: include) for
>                   http://www.mlhim.org/schemas/openehr/v1,
>                    succeeded
>                 
>                 Attempt to load a schema document from
>                 http://www.mlhim.org/schemas/openehr/v1/BaseTypes.xsd
>                  (source: include) for
>                   http://www.mlhim.org/schemas/openehr/v1,
>                    succeeded
>                 
>                 
>                 
>                 --
>                 ***************************************************************
>                 Timothy Cook, MSc
>                 
>                 LinkedIn
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>                 Skype ID == (upon request)
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>                 
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>                 
>                 
>                 
>                 _______________________________________________
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>         
>         
> 
> 

-- 
***************************************************************
Timothy Cook, MSc

LinkedIn Profile:http://www.linkedin.com/in/timothywaynecook 
Skype ID == (upon request)
Academic.Edu Profile: http://uff.academia.edu/TimothyCook

You may get my Public GPG key from  popular keyservers or    
from this link http://timothywayne.cook.googlepages.com/home

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