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Re: Build problems for MPI in Ubuntu 12.10

 

Dear Jeff,

I'm not sure whether that's the problem, but the ImportError probably means
it cannot find your _meep_mpi.so file. This could be, again, because of
non-default locations. By the way, if I'm not mistaking _meep_mpi.so is not
a file from the ubuntu repository but a file that was generated during your
compilation of python-meep.

In any case, it can be solved most likely by adding the so file to the
library path:
export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/path/to/_meep_mpi.so. Although I
thought, from my modest experience with linking and python packages, if the
_meep_mpi.so file is in the same folder as the meep_mpi.py file, it should
find it automatically (as it's also in the site/dist-packages directory).

Best regards,
Martin

2012/11/6 Jeff Chiles <pseudotexan@xxxxxxxxx>

> Thanks for your reply.  I took your advice, and I found out that it
> successfully compiled if I installed the Ubuntu packages
> "libmeep-mpi-default-dev" and "meep-mpi-default", and then changed the
> extension in the setup-mpi.py to "_meep_mpi-default" and the libraries var
> to "meep_mpi-default".
>
> So it successfully compiled, but when I tried to execute an mpi script, it
> gives me this error:
>
> *username@ubuntu:~/python-meep-1.4.2/python-meep/samples$ mpipython
> ./python_meep_symmetry_straight_wg.py*
> *Traceback (most recent call last):*
> *  File "./python_meep_symmetry_straight_wg.py", line 7, in <module>*
> *    from meep_mpi import *  # make it 'meep_mpi' for MPI-meep and 'meep'
> for non-MPI meep*
> *  File "/usr/local/lib/python2.7/dist-packages/meep_mpi.py", line 26, in
> <module>*
> *    _meep_mpi = swig_import_helper()*
> *  File "/usr/local/lib/python2.7/dist-packages/meep_mpi.py", line 18, in
> swig_import_helper*
> *    import _meep_mpi*
> *ImportError: No module named _meep_mpi*
>
> So it seems that it still isn't able to link properly despite my changes.
>
> It may just be that the ubuntu packages just don't work well with this
> version of python-meep.  If this is the case, where would you recommend I
> get the packages for meep-mpi and libmeep-mpi, so that I can avoid these
> problems I'm having?
>
> Thanks again.
>
> -Jeff
>
>
> On Mon, Nov 5, 2012 at 5:12 AM, Nizamov Shawkat <nizamov.shawkat@xxxxxxxxx
> > wrote:
>
>> Hello,
>>
>> Sorry for the delay with maillist - the policy of Launchpad changed it
>> to be a moderated list a year or so ago.
>>
>> The errors which you are facing are most probably caused by the meep
>> build. The first error you are mentioning is due to the meep's include
>> *.h files  being absent at their usual location under /usr/include.
>> You fixed that but now the problem is that meep's library with mpi
>> support can not be found (it looks for /usr/lib/libmeep_mpi.so). Is it
>> a meep compiled by yourself or an ubuntu package? Please check, where
>> is the library file (libmeep_mpi.so) and how it is named. Ee.g., in
>> ubuntu 12.10 I see that the meep-openmpi calls this library as
>> libmeep_openmpi.so, correspondingly, the compiler option "-lmeep_mpi"
>> should be changed to "-lmeep_openmpi".
>>
>>
>> With best regards,
>> Shavkat
>>
>
>
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