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[TennSeven <777669@xxxxxxxxxxxxxxxxxx>]

I finally got rid of this problem by reverting Compiz to its default
settings.  I disabled Unity again and re-enabled many of the plugins I
was using and the problem has not reappeared.  Attached is the backup I
made of my Compiz settings *before* I reverted.  My guess is that the
problem is in one of these plugins.

** Attachment added: "compizsettings.profile"
   https://bugs.launchpad.net/ubuntu/+source/nvidia-graphics-drivers/+bug/777669/+attachment/2119571/+files/compizsettings.profile

** Also affects: compiz
   Importance: Undecided
       Status: New

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which is subscribed to nvidia-graphics-drivers in Ubuntu.
https://bugs.launchpad.net/bugs/777669

Title:
  Invisible window blocks mouse interactions with visible windows after
  upgrading to 11.04