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[gil <872740@xxxxxxxxxxxxxxxxxx>]

Same here: A dual screen setup, Ubuntu 11.10, nvidia geforce 9300, the exact same message reported by James Stewart appears after each login (except it's "with output at 1680x1050@50Hz").
The only un-commented line in my xorg.conf (created with the nvidia X server settings tool) referring to some screen size that I could find is this:
    Option         "metamodes" "CRT: 1920x1200 +1680+0, DFP: nvidia-auto-select +0+0"

1680x1050 is the native (and configured) resolution of the thinkpad own
display, 1920x1200 is the 2nd display's resolution.

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https://bugs.launchpad.net/bugs/872740

Title:
  Could not apply stored configuration for monitors

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