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[PoxyPig <1196339@xxxxxxxxxxxxxxxxxx>]

After reading again Set Hallstrom's post I looked at my

      /usr/share/applications/defaults.list and found it had
      inode/directory=nautilus-folder-handler.desktop

As I do not have Nautilus on my system I changed the inode/directory entry to point to PCManFM but that change had no effect.
I then investigated the default applications using lxsession-default-apps and found the default file manager unset so set it to PCManFM. That appears to have resolved my issue, now when I click "Show in File Manager" the folder opens in PCManFM.
So perhaps the cause of this problem is the uninstallation of Nautilus which leaves the system with no default file manager set.

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https://bugs.launchpad.net/bugs/1196339

Title:
  Firefox "Open Containing Folder" opens Audacious instead of File
  Manager

Status in audacious package in Ubuntu:
  Confirmed

Bug description:
  Steps to reproduce:

  1. Open Firefox web browser
  2. Click on Downloads arrow (to right of search box by default)
  3. Click on Show All Downloads
  4. Click on the "Open Containing Folder" icon next to a file you have already downloaded

  Actual behavior: The containing folder doesn't open. Instead Audacious
  opens.

  Expected behavior: The containing folder should open in the File
  Manager.

  This bug is present in a clean install of Ubuntu Studio 13.04

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