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I had the same issue with Firefox on Arch Linux and LXDE. The "Open
containing folder" in Firefox was opening the Elementary Code editor.

The solution described in rmoorman's comment #16 also worked for me.

I had to update /usr/share/applications/mimeinfo.cache ,

and change the line:

inode/directory=io.elementary.code.desktop;pcmanfm.desktop;

to:

inode/directory=pcmanfm.desktop;

Now Firefox opens the folder correctly with pcmanfm. I guess it is the
same for all applications.

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https://bugs.launchpad.net/bugs/1196339

Title:
  Firefox "Open Containing Folder" opens Audacious instead of File
  Manager

Status in audacious package in Ubuntu:
  Confirmed
Status in desktop-file-utils package in Ubuntu:
  Confirmed

Bug description:
  Steps to reproduce:

  1. Open Firefox web browser
  2. Click on Downloads arrow (to right of search box by default)
  3. Click on Show All Downloads
  4. Click on the "Open Containing Folder" icon next to a file you have already downloaded

  Actual behavior: The containing folder doesn't open. Instead Audacious
  opens.

  Expected behavior: The containing folder should open in the File
  Manager.

  This bug is present in a clean install of Ubuntu Studio 13.04

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