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Error with pylab

To: <yade-dev@xxxxxxxxxxxxxxxxxxx>
From: boon chiaweng <booncw@xxxxxxxxxxx>
Date: Wed, 2 Jun 2010 17:57:56 +0800
Importance: Normal
Hi,

I know the cause of the error is that I've added an external library NAG.  But I would really like to fix it.   I hope someone can help me.  It gives an error when I use the plot function.  Compiled with debug=1 and brief=0:


 ** On entry to F06YAF/DGEMM parameter number  4 had an illegal value
SIGSEGV/SIGABRT handler called; gdb batch file is `/tmp/yade-NMZ6N3/tmp-0'
GNU gdb 6.8-debian
Copyright (C) 2008 Free Software Foundation, Inc.
License GPLv3+: GNU GPL version 3 or later <http://gnu.org/licenses/gpl.html>
This is free software: you are free to change and redistribute it.
There is NO WARRANTY, to the extent permitted by law.  Type "show copying"
and "show warranty" for details.
This GDB was configured as "x86_64-linux-gnu".
(no debugging symbols found)
(no debugging symbols found)
[Thread debugging using libthread_db enabled]
[New Thread 0x7f54c22f26f0 (LWP 3815)]
[New Thread 0x7f54a9ab3950 (LWP 3818)]
[New Thread 0x7f54aac90950 (LWP 3817)]
[New Thread 0x7f54ab491950 (LWP 3816)]
(no debugging symbols found)
(no debugging symbols found)
(no debugging symbols found)
(no debugging symbols found)
(no debugging symbols found)
(no debugging symbols found)
(no debugging symbols found)
(no debugging symbols found)
(no debugging symbols found)
warning: Lowest section in /usr/lib/libicudata.so.38 is .hash at 0000000000000158
0x00007f54c1303299 in ?? () from /lib/libc.so.6
No symbol "info" in current context.

Thread 4 (Thread 0x7f54ab491950 (LWP 3816)):
#0  0x00007f54c13a2742 in select () from /lib/libc.so.6
#1  0x00000000004f3783 in ?? ()
#2  0x00000000004a2b03 in PyEval_EvalFrameEx ()
#3  0x00000000004a4649 in PyEval_EvalCodeEx ()
#4  0x00000000005329ad in ?? ()
#5  0x000000000041d3bd in PyObject_Call ()
#6  0x0000000000424f48 in ?? ()
#7  0x000000000041d3bd in PyObject_Call ()
#8  0x000000000049cd46 in PyEval_CallObjectWithKeywords ()
#9  0x00000000004d3b3d in ?? ()
#10 0x00007f54c1ee13ba in start_thread () from /lib/libpthread.so.0
#11 0x00007f54c13a9fcd in clone () from /lib/libc.so.6
#12 0x0000000000000000 in ?? ()

Thread 3 (Thread 0x7f54aac90950 (LWP 3817)):
#0  0x00007f54c13a2742 in select () from /lib/libc.so.6
#1  0x00000000004f3783 in ?? ()
#2  0x00000000004a2b03 in PyEval_EvalFrameEx ()
#3  0x00000000004a4649 in PyEval_EvalCodeEx ()
#4  0x00000000005329ad in ?? ()
#5  0x000000000041d3bd in PyObject_Call ()
#6  0x0000000000424f48 in ?? ()
#7  0x000000000041d3bd in PyObject_Call ()
#8  0x000000000049cd46 in PyEval_CallObjectWithKeywords ()
#9  0x00000000004d3b3d in ?? ()
#10 0x00007f54c1ee13ba in start_thread () from /lib/libpthread.so.0
#11 0x00007f54c13a9fcd in clone () from /lib/libc.so.6
#12 0x0000000000000000 in ?? ()

Thread 2 (Thread 0x7f54a9ab3950 (LWP 3818)):
#0  0x00007f54c13a2742 in select () from /lib/libc.so.6
#1  0x00007f54be641add in QEventLoop::processEvents () from /usr/lib/libqt-mt.so.3
#2  0x00007f54be6a7ec1 in QEventLoop::enterLoop () from /usr/lib/libqt-mt.so.3
#3  0x00007f54be6a7d82 in QEventLoop::exec () from /usr/lib/libqt-mt.so.3
#4  0x00007f54c02914de in boost::function0<void, std::allocator<boost::function_base>>::operator() () from /usr/lib/libboost_thread-gcc42-mt-1_34_1.so.1.34.1
#5  0x00007f54c0291162 in ?? () from /usr/lib/libboost_thread-gcc42-mt-1_34_1.so.1.34.1
#6  0x00007f54c1ee13ba in start_thread () from /lib/libpthread.so.0
#7  0x00007f54c13a9fcd in clone () from /lib/libc.so.6
#8  0x0000000000000000 in ?? ()

Thread 1 (Thread 0x7f54c22f26f0 (LWP 3815)):
#0  0x00007f54c1303299 in ?? () from /lib/libc.so.6
#1  0x00007f54c130364c in system () from /lib/libc.so.6
#2  0x00007f54c095d2d0 in crashHandler (sig=11) at core/main/pyboot.cpp:43
#3  <signal handler called>
#4  0x00000000019847e0 in ?? ()
#5  0x00007f54ae92fe8e in ~ObjectPtrT (this=0x7f54c0b7d560) at /usr/include/log4cxx/helpers/objectptr.h:100
#6  0x00007f54c12fa6ed in exit () from /lib/libc.so.6
#7  0x00007f54b0b2f3d3 in f90_finish () from /usr/local/NAG/cll6a09dhl/lib/libnagc_nag.so
#8  0x00007f54b1299954 in __NAGf90_stop_line () from /usr/local/NAG/cll6a09dhl/lib/libnagc_nag.so
#9  0x00007f54b042a296 in f06aazn_ () from /usr/local/NAG/cll6a09dhl/lib/libnagc_nag.so
#10 0x00007f54b04f07eb in f06yafn_ () from /usr/local/NAG/cll6a09dhl/lib/libnagc_nag.so
#11 0x00007f54afddfd2d in dgemm_ () from /usr/local/NAG/cll6a09dhl/lib/libnagc_nag.so
#12 0x00007f54ad9fce27 in cblas_dgemm () from /usr/lib/libblas.so.3gf
#13 0x00007f54adc800ab in ?? () from /usr/lib/python2.6/dist-packages/numpy/core/_dotblas.so
#14 0x00000000004a2b03 in PyEval_EvalFrameEx ()
#15 0x00000000004a3dae in PyEval_EvalFrameEx ()
#16 0x00000000004a4649 in PyEval_EvalCodeEx ()
#17 0x00000000004a2cb0 in PyEval_EvalFrameEx ()
#18 0x00000000004a4649 in PyEval_EvalCodeEx ()
#19 0x00000000004a4762 in PyEval_EvalCode ()
#20 0x00000000004b832e in PyImport_ExecCodeModuleEx ()
#21 0x00000000004b9461 in ?? ()
#22 0x00000000004ba2ba in ?? ()
#23 0x00000000004ba54c in ?? ()
#24 0x00000000004babfe in ?? ()
#25 0x00000000004bb19f in PyImport_ImportModuleLevel ()
#26 0x000000000049c869 in ?? ()
#27 0x000000000041d3bd in PyObject_Call ()
#28 0x000000000049cd46 in PyEval_CallObjectWithKeywords ()
#29 0x000000000049faa2 in PyEval_EvalFrameEx ()
#30 0x00000000004a4649 in PyEval_EvalCodeEx ()
#31 0x00000000004a4762 in PyEval_EvalCode ()
#32 0x00000000004b832e in PyImport_ExecCodeModuleEx ()
#33 0x00000000004b9461 in ?? ()
#34 0x00000000004ba2ba in ?? ()
#35 0x00000000004ba869 in ?? ()
#36 0x00000000004bae8d in ?? ()
#37 0x00000000004bb19f in PyImport_ImportModuleLevel ()
#38 0x000000000049c869 in ?? ()
#39 0x000000000041d3bd in PyObject_Call ()
#40 0x000000000049cd46 in PyEval_CallObjectWithKeywords ()
#41 0x000000000049faa2 in PyEval_EvalFrameEx ()
#42 0x00000000004a4649 in PyEval_EvalCodeEx ()
#43 0x00000000004a4762 in PyEval_EvalCode ()
#44 0x00000000004b832e in PyImport_ExecCodeModuleEx ()
#45 0x00000000004b9461 in ?? ()
#46 0x00000000004ba2ba in ?? ()
#47 0x00000000004ba869 in ?? ()
#48 0x00000000004bae8d in ?? ()
#49 0x00000000004bb19f in PyImport_ImportModuleLevel ()
#50 0x000000000049c869 in ?? ()
#51 0x000000000041d3bd in PyObject_Call ()
#52 0x000000000049cd46 in PyEval_CallObjectWithKeywords ()
#53 0x000000000049faa2 in PyEval_EvalFrameEx ()
#54 0x00000000004a4649 in PyEval_EvalCodeEx ()
#55 0x00000000004a4762 in PyEval_EvalCode ()
#56 0x00000000004b832e in PyImport_ExecCodeModuleEx ()
#57 0x00000000004b9461 in ?? ()
#58 0x00000000004ba2ba in ?? ()
#59 0x00000000004ba54c in ?? ()
#60 0x00000000004babfe in ?? ()
#61 0x00000000004bb19f in PyImport_ImportModuleLevel ()
#62 0x000000000049c869 in ?? ()
#63 0x000000000041d3bd in PyObject_Call ()
#64 0x000000000049cd46 in PyEval_CallObjectWithKeywords ()
#65 0x000000000049faa2 in PyEval_EvalFrameEx ()
#66 0x00000000004a4649 in PyEval_EvalCodeEx ()
#67 0x00000000004a4762 in PyEval_EvalCode ()
#68 0x00000000004b832e in PyImport_ExecCodeModuleEx ()
#69 0x00000000004b9461 in ?? ()
#70 0x00000000004ba2ba in ?? ()
#71 0x00000000004ba5d6 in ?? ()
#72 0x00000000004babb7 in ?? ()
#73 0x00000000004bb19f in PyImport_ImportModuleLevel ()
#74 0x000000000049c869 in ?? ()
#75 0x000000000041d3bd in PyObject_Call ()
#76 0x000000000049cd46 in PyEval_CallObjectWithKeywords ()
#77 0x000000000049faa2 in PyEval_EvalFrameEx ()
#78 0x00000000004a4649 in PyEval_EvalCodeEx ()
#79 0x00000000004a26dd in PyEval_EvalFrameEx ()
#80 0x00000000004a4649 in PyEval_EvalCodeEx ()
#81 0x00000000004a2cb0 in PyEval_EvalFrameEx ()
#82 0x00000000004a4649 in PyEval_EvalCodeEx ()
#83 0x00000000004a2cb0 in PyEval_EvalFrameEx ()
#84 0x00000000004a3dae in PyEval_EvalFrameEx ()
#85 0x00000000004a4649 in PyEval_EvalCodeEx ()
#86 0x00000000004a2cb0 in PyEval_EvalFrameEx ()
#87 0x00000000004a4649 in PyEval_EvalCodeEx ()
#88 0x00000000004a2cb0 in PyEval_EvalFrameEx ()
#89 0x00000000004a4649 in PyEval_EvalCodeEx ()
#90 0x00000000005329ad in ?? ()
#91 0x000000000041d3bd in PyObject_Call ()
#92 0x0000000000424f48 in ?? ()
#93 0x000000000041d3bd in PyObject_Call ()
#94 0x0000000000425be2 in ?? ()
#95 0x000000000041d3bd in PyObject_Call ()
#96 0x00000000004a000f in PyEval_EvalFrameEx ()
#97 0x00000000004a4649 in PyEval_EvalCodeEx ()
#98 0x00000000004a4762 in PyEval_EvalCode ()
#99 0x00000000004c4c3c in PyRun_FileExFlags ()
#100 0x00000000004c4f6b in PyRun_SimpleFileExFlags ()
#101 0x00000000004189ce in Py_Main ()
#102 0x00007f54c12e25a6 in __libc_start_main () from /lib/libc.so.6
#103 0x0000000000417ae9 in _start ()
#0  0x00007f54c1303299 in ?? () from /lib/libc.so.6
Segmentation fault




Thanks,

Boon

 		 	   		  
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Follow ups

Re: Error with pylab
From: Václav Šmilauer, 2010-06-02
Re: Error with pylab
From: Anton Gladky, 2010-06-02