yade-dev team mailing list archive

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------------------------------------------------------------
revno: 2661
committer: Bruno Chareyre <bruno.chareyre@xxxxxxxxxxx>
branch nick: yade
timestamp: Wed 2011-01-19 09:37:26 +0100
message:
  - Integrate check tests in yade options (see README).
  - Handle PBCs in Shop::getStressLWForEachBody (not tested)
removed:
  scripts/test/checks/data/
  scripts/test/checks/data/WallStressesCheckTest
  scripts/test/checks/data/checkTestTriax.spheres
added:
  scripts/test/checks/README
  scripts/test/checks/checkList.py
  scripts/test/checks/checkTestDummy.py
  scripts/test/checks/dataTriax/
  scripts/test/checks/dataTriax/WallStressesCheckTest
  scripts/test/checks/dataTriax/checkTestTriax.spheres
modified:
  core/main/main.py.in
  pkg/dem/Shop.cpp
  scripts/test/checks/checkTestTriax.py


--
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=== modified file 'core/main/main.py.in'
--- core/main/main.py.in	2010-11-22 17:58:56 +0000
+++ core/main/main.py.in	2011-01-19 08:37:26 +0000
@@ -34,6 +34,7 @@
 par.add_option('--rebuild',help="Re-run build in the source directory, then run the updated yade with the same command line except --rebuild. The build profile for this build (${profile}) and its stored parameters will be used.",dest='rebuild',action='store_true')
 par.add_option('--test',help="Run regression test suite and exit; the exists status is 0 if all tests pass, 1 if a test fails and 2 for an unspecified exception.",dest="test",action='store_true')
 par.add_option('--debug',help='Run the debug build, if available.',dest='debug',action='store_true')
+par.add_option('--checks',help='Run a series of user-defined check tests as described in ${sourceRoot}/scripts/test/checks/README',dest='checks',action='store_true')
 par.add_option('--no-gdb',help='Do not show backtrace when yade crashes (only effective with --debug).',dest='noGdb',action='store_true',)
 par.disable_interspersed_args()
 
@@ -89,7 +90,6 @@
 		print 20*'*'+' SOME TESTS FAILED '+20*'*'
 		sys.exit(1)
 
-
 # c++ boot code checks for YADE_DEBUG at some places; debug verbosity is equivalent
 # do this early, to have debug messages in the boot code (plugin registration etc)
 if opts.verbosity>1: os.environ['YADE_DEBUG']='1'
@@ -144,6 +144,11 @@
 from yade import *
 from math import *
 
+# Run the check tests listed in scripts/test/checks/checkList.py
+if opts.checks:
+	checksPath='${sourceRoot}'+'/scripts/test/checks' # replaced at install-time
+	execfile(checksPath+'/checkList.py')
+
 def userSession(qt4=False):
 	# prepare nice namespace for users
 	import yade
@@ -243,5 +248,6 @@
 	import yade.qt # this yade.qt is different from the one that comes with qt3
 	qapp=QtGui.QApplication(sys.argv)
 	userSession(qt4=True)
+
 O.exitNoBacktrace()
 

=== modified file 'pkg/dem/Shop.cpp'
--- pkg/dem/Shop.cpp	2011-01-17 16:20:12 +0000
+++ pkg/dem/Shop.cpp	2011-01-19 08:37:26 +0000
@@ -585,7 +585,10 @@
 		if (revertSign) f=-f;//revert sign for some laws, so that every interaction type can give the same result
 		//Sum f_i*l_j/V for each contact of each particle
 		bStresses[I->getId1()]-=(3.0/(4.0*Mathr::PI*pow(geom->refR1,3)))*f*((geom->contactPoint-Body::byId(I->getId1(),scene)->state->pos).transpose());
-		bStresses[I->getId2()]+=(3.0/(4.0*Mathr::PI*pow(geom->refR2,3)))*f*((geom->contactPoint-Body::byId(I->getId2(),scene)->state->pos).transpose());
+		if (!scene->isPeriodic)
+			bStresses[I->getId2()]+=(3.0/(4.0*Mathr::PI*pow(geom->refR2,3)))*f*((geom->contactPoint- (Body::byId(I->getId2(),scene)->state->pos)).transpose());
+		else
+			bStresses[I->getId2()]+=(3.0/(4.0*Mathr::PI*pow(geom->refR2,3)))*f* ((geom->contactPoint- (Body::byId(I->getId2(),scene)->state->pos + (scene->cell->Hsize*I->cellDist.cast<Real>()))).transpose());
 	}
 }
 

=== added file 'scripts/test/checks/README'
--- scripts/test/checks/README	1970-01-01 00:00:00 +0000
+++ scripts/test/checks/README	2011-01-19 08:37:26 +0000
@@ -0,0 +1,9 @@
+=== Checktesting ===
+
+1. Check tests perform comparisons of simulation results between different versions of yade, as discussed in http://www.mail-archive.com/yade-dev@xxxxxxxxxxxxxxxxxxx/msg05784.html and the whole thread. They differ with regression tests in the sense that they simulate more complex situations and combinations of different engines, and usually don't have a mathematical proof (though there is no restriction on the latest).
+2. They compare the values obtained in version N with values obtained in a previous version or any other "expected" results. The reference values must be hardcoded in the script itself or in data files provided with the script.
+3. Check tests are based on regular yade scripts, so that users can easily commit their own scripts to trunk in order to get some automatized testing after commits.
+4. Since the check tests history will be mostly based on standard output generated by "yade --checks", a meaningfull checkTest should include some "print" command telling if something went wrong. If the script itself fails for some reason and can't generate an output, the log will contain "scriptName failure".
+5. An example check test can be found in checkTestTriax.py. It shows results comparison, output, and how to define the path to data files using "checksPath".
+6. Users are encouraged to add their own scripts and list them in checkList.py. Discussion of some specific checktests design in users question is welcome.
+7. A check test should never need more than a few seconds to run. If your typical script needs more, try and reduce the number of element or the number of steps.
\ No newline at end of file

=== added file 'scripts/test/checks/checkList.py'
--- scripts/test/checks/checkList.py	1970-01-01 00:00:00 +0000
+++ scripts/test/checks/checkList.py	2011-01-19 08:37:26 +0000
@@ -0,0 +1,14 @@
+# encoding: utf-8
+# 2011 © Bruno Chareyre <bruno.chareyre@xxxxxxxxxxx>
+import math,os,sys
+
+#List your scripts here
+for script in ["checkTestDummy","checkTestTriax"]:
+	try:
+		print "running: ",script
+		execfile(checksPath+"/"+script+".py")
+	except:
+		print script," failure"
+	#this "else" is redundant with scriipt output, not needed
+	#else:
+		#print script," sucess, inspect results."

=== added file 'scripts/test/checks/checkTestDummy.py'
--- scripts/test/checks/checkTestDummy.py	1970-01-01 00:00:00 +0000
+++ scripts/test/checks/checkTestDummy.py	2011-01-19 08:37:26 +0000
@@ -0,0 +1,7 @@
+# encoding: utf-8
+# 2011 © Bruno Chareyre <bruno.chareyre@xxxxxxxxxxx>
+# A dummy test, just to give an example, and detect possible path problems
+from yade import pack,log,utils,export,plot
+import math,os,sys
+print 'checkTest mechanism success'
+

=== modified file 'scripts/test/checks/checkTestTriax.py'
--- scripts/test/checks/checkTestTriax.py	2011-01-11 18:58:08 +0000
+++ scripts/test/checks/checkTestTriax.py	2011-01-19 08:37:26 +0000
@@ -1,20 +1,22 @@
- 
-#!/usr/local/bin/yade-trunk -x
 # encoding: utf-8
+# 2011 © Bruno Chareyre <bruno.chareyre@xxxxxxxxxxx>
+# Check the result of a triaxial test on a dense 100 spheres packing with position defined,
+# comparing stresses at the "peak" state. The initial positions have been generated by
+# internal compaction without friction, so that it is initially at equilibrium without shear forces. 
+# Positions and reference results are in dataTriax folder.
 from yade import pack,log,utils,export,plot
 import math,os,sys
 
 tolerance=0.01
-interactive=True
+interactive=False
 errors=0
-
-tt=TriaxialTest(internalCompaction=True,numberOfGrains=100,compactionFrictionDeg=0,sphereFrictionDeg=30,importFilename='checkTestTriax.spheres')
+tt=TriaxialTest(internalCompaction=True,numberOfGrains=100,compactionFrictionDeg=0,sphereFrictionDeg=30,importFilename=checksPath+'/dataTriax/checkTestTriax.spheres')
 tt.generate("checkTest.yade")
 O.load("checkTest.yade")
 O.run(2020,True)
 if interactive:
 	print O.engines[4].stress(0)[1],O.engines[4].stress(1)[1], O.engines[4].stress(2)[0], O.engines[4].stress(3)[0], O.engines[4].stress(4)[2], O.engines[4].stress(5)[2]
-	os.system('gnuplot -e "plot \'./WallStresses\' using 1:3; replot \'./WallStressesCheckTest\' using 1:3; replot \'./WallStresses\' using 1:4; replot \'./WallStressesCheckTest\' using 1:4; pause -1"')
+	os.system('gnuplot -e "plot \'./WallStresses\' using 1:3; replot'+checksPath+'\'/data/WallStressesCheckTest\' using 1:3; replot '+checksPath+'\'/data/WallStresses\' using 1:4; replot '+checksPath+'\'/data/WallStressesCheckTest\' using 1:4; pause -1"')
 
 if abs((O.engines[4].stress(1)[1]-107157.2)/107157.2)>tolerance :
 	print "Triaxial checkTest: difference on peak stress"
@@ -23,5 +25,5 @@
 	print "Triaxial checkTest: difference on peak stress"
 	errors+=1
 if errors==0:
-	print "success: checkTestTriax"
+	print "checkTestTriax success"
 

=== removed directory 'scripts/test/checks/data'
=== removed file 'scripts/test/checks/data/WallStressesCheckTest'
--- scripts/test/checks/data/WallStressesCheckTest	2011-01-11 18:58:08 +0000
+++ scripts/test/checks/data/WallStressesCheckTest	1970-01-01 00:00:00 +0000
@@ -1,301 +0,0 @@
-iteration s11 s22 s33 e11 e22 e33 unb_force porosity kineticE
-400 49566.037998387372 48955.252378055688 50830.41890644082 0 0 0 0.0053680811782467674 0.44488693137992941 0.15903777482138973
-420 49977.096201642387 48864.614561700706 49899.23302581007 0.00021267293086211031 5.8964253128234604e-06 -0.00035627549183499062 0.0068712278837924348 0.44496336859240598 0.19015952577734965
-440 50036.058942961281 48968.561929892297 49972.202706320968 0.00024631280266909053 2.2978202122293951e-05 -0.00032962028724921116 0.0046803160246437908 0.44492041994286163 0.15828015151073432
-460 49987.064491349811 49100.818028878886 49996.869812418969 0.00016482477500420631 5.1178199623532612e-05 -0.00028965271763504167 0.0037816477919528054 0.44492781380926466 0.13205742692258149
-480 49994.801281714193 49190.913320016458 50012.447463006683 0.00017935166373592845 9.0429787702956814e-05 -0.0003017210425847727 0.0024870837542071843 0.44490466118123817 0.12684051084280809
-500 50001.058302638965 49374.565212195215 50007.448078951697 0.00018012080645627497 0.00014066702764890021 -0.00032441043230233674 0.0022224589053528895 0.44488894232788867 0.12098178842261725
-520 50001.972762399855 49587.995913963183 49999.900082141794 0.00016944808710761875 0.00020182366019785475 -0.0003336510480161043 0.0017217812852814381 0.44486604724526796 0.11684035515158114
-540 50004.546643027519 49829.569522149781 50002.063374404788 0.00015293821005952561 0.00027383480127565057 -0.00033552983965115383 0.0014274035215790576 0.44483627879208898 0.093197709146506172
-560 50014.752514428495 50128.491462389895 49999.362303495283 0.00013745665316053127 0.0003566341897850414 -0.00035477664315635164 0.001810806332081626 0.44480959085979099 0.090567782649043263
-580 49998.209499657431 50451.165301212961 50004.929553092625 0.00012292085491632948 0.00045015702910980806 -0.00037052798672515167 0.0032703829593221777 0.44477448189695884 0.074286413598736653
-600 50005.359621062576 50841.94276532701 49998.114355201702 0.00011148388275992605 0.00055434040164428322 -0.00038827295699470272 0.00324864200831451 0.44473283762739801 0.067260565073482936
-620 50005.62808209275 51223.817503700709 50002.297374122194 9.3364590503689941e-05 0.00066911667837191028 -0.00040761356222081399 0.0027744067202789061 0.44468990472120251 0.060230488047957942
-640 50002.963006223261 51593.510830551415 50002.522355566296 6.4891961117484562e-05 0.00079442596497925619 -0.00042728310164930858 0.0024974079932179433 0.44464705138825594 0.056768052647139473
-660 50004.47502109543 52064.593028300187 50060.399737517502 4.509840815728011e-05 0.00093020215871885813 -0.00045563276377594145 0.0023348230672856829 0.44459838202267599 0.055823130576791349
-680 50003.922870151539 52611.469521519139 50002.386481644186 2.1435372258399064e-05 0.0010763822755367532 -0.00047974978058954181 0.0019602328835925582 0.44454372777891621 0.052284334705629293
-700 50005.94855032242 53107.720732221416 50002.9976237222 -1.1067175470784068e-05 0.0012329070304957727 -0.00050266090888447087 0.001700832071693125 0.44448756215649532 0.054150188884905824
-720 50006.389210929665 53640.921536506714 50005.863747930838 -3.8972971035134305e-05 0.001399704940235198 -0.0005314267240745 0.0015983052595450757 0.4444263822589794 0.053756805581121142
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-820 50009.764236139432 56938.971703308722 50003.033155897574 -0.00021925042124761637 0.0023857234018523979 -0.0007115680821681747 0.0014709716248607935 0.44407870685486495 0.046978302688125716
-840 50008.137044221599 57671.239697471647 50004.816766807031 -0.00026076512789549914 0.0026129032370259117 -0.00075293276112191787 0.0015706428060102838 0.4439984813741904 0.048442529104732533
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-1000 50008.491219792108 64594.160565640654 50005.533808335676 -0.0006794766661242824 0.0047799248681691664 -0.0011968827217597241 0.0016959790704666143 0.44327278197601738 0.047474298047119522
-1020 50011.49623842779 65600.190316090346 50012.64758585854 -0.00073440428810715795 0.0050936037380713431 -0.0012706431296587101 0.0016224446932724182 0.44316978301365434 0.045992318862660933
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-1060 50012.81036957405 67598.623818575463 50014.84438847912 -0.00085578899933674022 0.0057488918948768583 -0.0014371918555643056 0.0016629589752940118 0.44296519122881128 0.050374157731787418
-1080 50015.114556055763 68640.092420288682 50015.315531424734 -0.00092311339800707612 0.0060903678409575512 -0.0015247805057382116 0.0015852012972787978 0.44286125950642508 0.053366554192070939
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-1200 50022.069512445865 75124.810209945164 50016.229737059344 -0.0014051875576485216 0.008329313252456479 -0.0021253896633859899 0.0019068210163981707 0.4422166885248931 0.0697953189638576
-1220 50013.678711623026 76245.324262376322 50015.00639442441 -0.0015046130828248352 0.0087335482107491948 -0.0022373949305522899 0.0020025259530435115 0.44210913521071282 0.069127260601857754
-1240 50025.896094259748 77409.032316124285 50014.988539847582 -0.0016064410272227038 0.0091465681130706925 -0.0023366018980840145 0.0020658102884513743 0.44199085818506667 0.07198189757756443
-1260 50015.954368970517 78587.044802919801 50018.478542287499 -0.0017218227024756235 0.0095682475078417515 -0.00245040311198283 0.002292345262936305 0.44188343303601246 0.08454884024886547
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-1300 50030.65797566816 80920.354866014313 50014.490254409859 -0.0019458213554588793 0.010437441576343994 -0.002694645312997488 0.0027198129974564502 0.44165960953604277 0.10271063008236009
-1320 50012.038252986713 82078.499978884211 50015.776798700048 -0.0020640863280565508 0.010884742932449567 -0.0028349506515926888 0.002758351795918186 0.44155422342623107 0.12517899118391776
-1340 50022.072309239811 83264.808937098205 50020.224676926104 -0.0021633253101561159 0.011340563181045945 -0.0029819228578914681 0.003150579192822038 0.44143715586304955 0.10928972384026862
-1360 50023.351005747929 84557.013150444851 50017.158685400595 -0.0022943790430305856 0.011804741573059318 -0.0031179011818638683 0.0034009226467739666 0.44132702638991356 0.096016691629119993
-1380 50016.077590483656 85800.993930786994 50024.889794607101 -0.0024204195304700616 0.012277224479966689 -0.0032613361323940515 0.0035398513254209668 0.44121360009077365 0.10358518398584944
-1400 50027.253927804952 86929.933574173658 50028.103706971029 -0.0025700347505772979 0.012758070360127082 -0.0034147417082690634 0.0031638394270315211 0.44111422501674358 0.13614685479436714
-1420 50034.342183972702 88253.692664038696 50030.00224640769 -0.0027244532683565409 0.013266205328087678 -0.0035946403000395666 0.0037375973664536787 0.44101707224504094 0.124680339248309
-1440 50032.604734863715 89548.542985064094 50023.47663399476 -0.0028862285573388042 0.013782924067679756 -0.0037477966483777324 0.0037266036366262719 0.44090426531872134 0.12181755201776356
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=== removed file 'scripts/test/checks/data/checkTestTriax.spheres'
--- scripts/test/checks/data/checkTestTriax.spheres	2011-01-11 18:58:08 +0000
+++ scripts/test/checks/data/checkTestTriax.spheres	1970-01-01 00:00:00 +0000
@@ -1,100 +0,0 @@
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=== added directory 'scripts/test/checks/dataTriax'
=== added file 'scripts/test/checks/dataTriax/WallStressesCheckTest'
--- scripts/test/checks/dataTriax/WallStressesCheckTest	1970-01-01 00:00:00 +0000
+++ scripts/test/checks/dataTriax/WallStressesCheckTest	2011-01-19 08:37:26 +0000
@@ -0,0 +1,301 @@
+iteration s11 s22 s33 e11 e22 e33 unb_force porosity kineticE
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=== added file 'scripts/test/checks/dataTriax/checkTestTriax.spheres'
--- scripts/test/checks/dataTriax/checkTestTriax.spheres	1970-01-01 00:00:00 +0000
+++ scripts/test/checks/dataTriax/checkTestTriax.spheres	2011-01-19 08:37:26 +0000
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