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Message #08486
[Bug 410250] Re: Crashes at exit due to issues in external libs
log4cxx feature was removed from yade.
https://github.com/yade/trunk/commit/014b11496e7b9778e1b9a8f92a78655d27b3ed35
Anton
** Changed in: yade
Status: Confirmed => Fix Released
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https://bugs.launchpad.net/bugs/410250
Title:
Crashes at exit due to issues in external libs
Status in Yet Another Dynamic Engine:
Fix Released
Bug description:
SVN 1929
./../bin/yade-new_build rb.py
Python TCP server listening on localhost:9002, auth cookie is `duaeys'
Running script rb.py
/usr/lib/python2.6/dist-packages/pytz/__init__.py:32: UserWarning: Module pylab was already imported from /usr/lib/python2.6/dist-packages/pylab.py, but /usr/lib/python2.6/dist-packages is being added to sys.path
from pkg_resources import resource_stream
/usr/lib/python2.6/dist-packages/pytz/__init__.py:32: UserWarning: Module matplotlib was already imported from /usr/lib/python2.6/dist-packages/matplotlib/__init__.py, but /usr/lib/python2.6/dist-packages is being added to sys.path
from pkg_resources import resource_stream
Found suitable packing in database (radius=0.0035±0,N=8908,dim=0.1×0.1×0.2,scale=1), created Tue Aug 4 13:23:05 2009
Timestep 1.2521980674e-06
init
init done, will now run.
/var/lib/python-support/python2.6/IPython/Magic.py:38: DeprecationWarning: the sets module is deprecated
from sets import Set
__ __ ____ ____ _
\ \ / /_ _| _ \ ___ / ___|___ _ __ ___ ___ | | ___
\ V / _` | | | |/ _ \ | | / _ \| '_ \/ __|/ _ \| |/ _ \
| | (_| | |_| | __/ | |__| (_) | | | \__ \ (_) | | __/
|_|\__,_|____/ \___| \____\___/|_| |_|___/\___/|_|\___|
In [1]: 20090807T134120p11376 tension 3.10545120759e-05 314893.835573
20090807T134120p11376 tension 4.95870434758e-05 1220246.47637
20090807T134120p11376 tension 6.83700144894e-05 1832257.13433
20090807T134120p11376 tension 8.57755676287e-05 1832257.13433
20090807T134120p11376 tension 0.000105059417869 2441104.81173
20090807T134120p11376 tension 0.000124092828496 3248083.27549
20090807T134120p11376 tension 0.000142750579703 3636421.62995
20090807T134120p11376 tension 0.000162410089364 3915362.4634
20090807T134120p11376 tension 0.000177186026561 3915362.4634
20090807T134120p11376 tension 0.000190960205305 4103619.45267
20090807T134120p11376 tension 0.000212122352647 4185169.59173
20090807T134120p11376 tension 0.000232783620761 3969610.64164
20090807T134120p11376 tension 0.00025407098791 3439140.88348
20090807T134120p11376 tension 0.000274607036218 3439140.88348
20090807T134120p11376 tension 0.000294016106266 2971291.5821
20090807T134120p11376 tension 0.00031355039612 2499888.17851
20090807T134120p11376 tension 0.000332583806747 2293951.84493
20090807T134120p11376 tension 0.00035136677776 2010495.72312
Damaged, switching to compression...
init
Reversing plot data
init done, will now run.
20090807T134120p11376 compression -0.000318058309126 -4936274.05841
20090807T134120p11376 compression -0.00052967978252 -12976089.8308
20090807T134120p11376 compression -0.000726274879106 -20140908.0995
20090807T134120p11376 compression -0.000922869975691 -25809947.776
20090807T134120p11376 compression -0.00112447386455 -25809947.776
20090807T134120p11376 compression -0.00132106896113 -31087458.3646
20090807T134120p11376 compression -0.00151515966158 -35096527.8767
20090807T134120p11376 compression -0.0017029893717 -38098460.6142
20090807T134120p11376 compression -0.00183321797071 -39105953.8306
20090807T134120p11376 compression -0.00194842019291 -39105953.8306
20090807T134120p11376 compression -0.00207363999965 -39177604.9368
20090807T134120p11376 compression -0.00224644333296 -37684959.9577
20090807T134120p11376 compression -0.00240171589332 -34156169.5136
20090807T134120p11376 compression -0.00258328461309 -29564727.8904
20090807T134120p11376 compression -0.0027636011348 -29564727.8904
20090807T134120p11376 compression -0.00295268304298 -24495712.7421
20090807T134120p11376 compression -0.0031405127531 -20386295.3954
20090807T134120p11376 compression -0.00332208147287 -16592131.2889
Damaged, stopping.
Strengths fc=-3.91776e+07, ft=4.18517e+06, |fc/ft|=9.36106
gnuplot 20090807T134120p11376.gnuplot
Bye.
pure virtual method called
terminate called without an active exception
SIGSEGV/SIGABRT handler called; gdb batch file is `/home/gladk/.yade-new_build/gdb_crash_batch-pid11376'
GNU gdb 6.8-debian
Copyright (C) 2008 Free Software Foundation, Inc.
License GPLv3+: GNU GPL version 3 or later <http://gnu.org/licenses/gpl.html>
This is free software: you are free to change and redistribute it.
There is NO WARRANTY, to the extent permitted by law. Type "show copying"
and "show warranty" for details.
This GDB was configured as "x86_64-linux-gnu".
[Thread debugging using libthread_db enabled]
[New Thread 0x7fe7ccf567f0 (LWP 11376)]
[New Thread 0x7fe789137950 (LWP 11389)]
[New Thread 0x7fe78867c950 (LWP 11382)]
[New Thread 0x7fe78aafc950 (LWP 11379)]
[New Thread 0x7fe78d3bb950 (LWP 11378)]
[New Thread 0x7fe7951d3950 (LWP 11377)]
warning: Lowest section in /usr/lib/libicudata.so.38 is .hash at 0000000000000158
0x00007fe7c8004742 in select () from /lib/libc.so.6
No symbol "info" in current context.
Thread 6 (Thread 0x7fe7951d3950 (LWP 11377)):
#0 0x00007fe7c8004742 in select () from /lib/libc.so.6
#1 0x00007fe78740fa76 in ?? () from /usr/lib/python2.6/lib-dynload/readline.so
#2 0x00007fe7cca1bcaf in PyOS_Readline () from /usr/lib/libpython2.6.so.1.0
#3 0x00007fe7ccabd4f3 in ?? () from /usr/lib/libpython2.6.so.1.0
#4 0x00007fe7ccac6dbe in PyEval_EvalFrameEx () from /usr/lib/libpython2.6.so.1.0
#5 0x00007fe7ccac89a9 in PyEval_EvalCodeEx () from /usr/lib/libpython2.6.so.1.0
#6 0x00007fe7ccac7202 in PyEval_EvalFrameEx () from /usr/lib/libpython2.6.so.1.0
#7 0x00007fe7ccac89a9 in PyEval_EvalCodeEx () from /usr/lib/libpython2.6.so.1.0
#8 0x00007fe7ccac7202 in PyEval_EvalFrameEx () from /usr/lib/libpython2.6.so.1.0
#9 0x00007fe7ccac89a9 in PyEval_EvalCodeEx () from /usr/lib/libpython2.6.so.1.0
#10 0x00007fe7ccac7202 in PyEval_EvalFrameEx () from /usr/lib/libpython2.6.so.1.0
#11 0x00007fe7ccac89a9 in PyEval_EvalCodeEx () from /usr/lib/libpython2.6.so.1.0
#12 0x00007fe7cca4ea3d in ?? () from /usr/lib/libpython2.6.so.1.0
#13 0x00007fe7cca1fc48 in PyObject_Call () from /usr/lib/libpython2.6.so.1.0
#14 0x00007fe7cca303c0 in ?? () from /usr/lib/libpython2.6.so.1.0
#15 0x00007fe7cca1fc48 in PyObject_Call () from /usr/lib/libpython2.6.so.1.0
#16 0x00007fe7cca3109b in ?? () from /usr/lib/libpython2.6.so.1.0
#17 0x00007fe7cca1fc48 in PyObject_Call () from /usr/lib/libpython2.6.so.1.0
#18 0x00007fe7ccac550f in PyEval_EvalFrameEx () from /usr/lib/libpython2.6.so.1.0
#19 0x00007fe7ccac89a9 in PyEval_EvalCodeEx () from /usr/lib/libpython2.6.so.1.0
#20 0x00007fe7ccac8ac2 in PyEval_EvalCode () from /usr/lib/libpython2.6.so.1.0
#21 0x00007fe7ccae977a in PyRun_FileExFlags () from /usr/lib/libpython2.6.so.1.0
#22 0x00007fe7ccae9a6d in PyRun_SimpleFileExFlags () from /usr/lib/libpython2.6.so.1.0
#23 0x00007fe79654fc0b in PythonUI::execScript (script={static npos = 18446744073709551615, _M_dataplus = {<std::allocator<char>> = {<__gnu_cxx::new_allocator<char>> = {<No data fields>}, <No data fields>}, _M_p = 0x7fe7951d2dd0 "�w&\002"}}) at gui/py/PythonUI.cpp:46
#24 0x00007fe796551493 in PythonUI::pythonSession () at gui/py/PythonUI.cpp:99
#25 0x00007fe7cc3a14de in boost::function0<void, std::allocator<boost::function_base> >::operator() () from /usr/lib/libboost_thread-gcc42-mt-1_34_1.so.1.34.1
#26 0x00007fe7cc3a1162 in ?? () from /usr/lib/libboost_thread-gcc42-mt-1_34_1.so.1.34.1
#27 0x00007fe7cc7bd3ba in start_thread () from /lib/libpthread.so.0
#28 0x00007fe7c800bfcd in clone () from /lib/libc.so.6
#29 0x0000000000000000 in ?? ()
Thread 5 (Thread 0x7fe78d3bb950 (LWP 11378)):
#0 0x00007fe7cc7c3281 in sem_wait () from /lib/libpthread.so.0
#1 0x00007fe7ccaf34b8 in PyThread_acquire_lock () from /usr/lib/libpython2.6.so.1.0
#2 0x00007fe7ccac2204 in PyEval_RestoreThread () from /usr/lib/libpython2.6.so.1.0
#3 0x00007fe7ccb19622 in ?? () from /usr/lib/libpython2.6.so.1.0
#4 0x00007fe7ccac6dbe in PyEval_EvalFrameEx () from /usr/lib/libpython2.6.so.1.0
#5 0x00007fe7ccac89a9 in PyEval_EvalCodeEx () from /usr/lib/libpython2.6.so.1.0
#6 0x00007fe7cca4ea3d in ?? () from /usr/lib/libpython2.6.so.1.0
#7 0x00007fe7cca1fc48 in PyObject_Call () from /usr/lib/libpython2.6.so.1.0
#8 0x00007fe7cca303c0 in ?? () from /usr/lib/libpython2.6.so.1.0
#9 0x00007fe7cca1fc48 in PyObject_Call () from /usr/lib/libpython2.6.so.1.0
#10 0x00007fe7ccac17c6 in PyEval_CallObjectWithKeywords () from /usr/lib/libpython2.6.so.1.0
#11 0x00007fe7ccaf8dfd in ?? () from /usr/lib/libpython2.6.so.1.0
#12 0x00007fe7cc7bd3ba in start_thread () from /lib/libpthread.so.0
#13 0x00007fe7c800bfcd in clone () from /lib/libc.so.6
#14 0x0000000000000000 in ?? ()
Thread 4 (Thread 0x7fe78aafc950 (LWP 11379)):
#0 0x00007fe7c8004742 in select () from /lib/libc.so.6
#1 0x00007fe78addf504 in ?? () from /usr/lib/libtcl8.5.so.0
#2 0x00007fe7cc7bd3ba in start_thread () from /lib/libpthread.so.0
#3 0x00007fe7c800bfcd in clone () from /lib/libc.so.6
#4 0x0000000000000000 in ?? ()
Thread 3 (Thread 0x7fe78867c950 (LWP 11382)):
#0 0x00007fe7c957bbaa in ?? () from /usr/lib/libgomp.so.1
#1 0x00007fe7c957acdb in ?? () from /usr/lib/libgomp.so.1
#2 0x00007fe7cc7bd3ba in start_thread () from /lib/libpthread.so.0
#3 0x00007fe7c800bfcd in clone () from /lib/libc.so.6
#4 0x0000000000000000 in ?? ()
Thread 2 (Thread 0x7fe789137950 (LWP 11389)):
#0 0x00007fe7c7fcd92f in waitpid () from /lib/libc.so.6
#1 0x00007fe7c7f652d1 in ?? () from /lib/libc.so.6
#2 0x00007fe7c7f6564c in system () from /lib/libc.so.6
#3 0x00000000004731c1 in sigHandler (sig=6) at /home/gladk/dem/yade/new_build/trunk/core/yade.cpp:83
#4 <signal handler called>
#5 0x00007fe7c7f58fb5 in raise () from /lib/libc.so.6
#6 0x00007fe7c7f5abc3 in abort () from /lib/libc.so.6
#7 0x00007fe7c87fe0b4 in __gnu_cxx::__verbose_terminate_handler () from /usr/lib/libstdc++.so.6
#8 0x00007fe7c87fc4b6 in ?? () from /usr/lib/libstdc++.so.6
#9 0x00007fe7c87fc4e3 in std::terminate () from /usr/lib/libstdc++.so.6
#10 0x00007fe7c87fcd8f in __cxa_pure_virtual () from /usr/lib/libstdc++.so.6
#11 0x00007fe7899ec35e in ~ObjectPtrT (this=0x727f50) at /usr/include/log4cxx/helpers/objectptr.h:100
#12 0x00007fe7c7f5c6ed in exit () from /lib/libc.so.6
#13 0x00007fe7ccae7fbf in Py_Exit () from /usr/lib/libpython2.6.so.1.0
#14 0x00007fe7ccae80f2 in ?? () from /usr/lib/libpython2.6.so.1.0
#15 0x00007fe7ccae832d in PyErr_PrintEx () from /usr/lib/libpython2.6.so.1.0
#16 0x00007fe7ccae8625 in PyRun_SimpleStringFlags () from /usr/lib/libpython2.6.so.1.0
#17 0x00007fe7b529e957 in PeriodicPythonRunner::action (this=0x4493ad0, b=<value optimized out>) at /home/gladk/dem/yade/new_build/build-new_build/include/yade-new_build/yade/pkg-common/PeriodicPythonRunner.hpp:21
#18 0x00000000004656aa in MetaBody::moveToNextTimeStep (this=0x36b9230) at /home/gladk/dem/yade/new_build/trunk/core/MetaBody.cpp:93
#19 0x000000000046d3aa in SimulationFlow::singleAction (this=0x1f72230) at /home/gladk/dem/yade/new_build/trunk/core/SimulationFlow.cpp:18
#20 0x000000000046469c in ThreadRunner::call (this=<value optimized out>) at /home/gladk/dem/yade/new_build/trunk/core/ThreadWorker.cpp:71
#21 0x0000000000464748 in ThreadRunner::run (this=0x51d84d0) at /home/gladk/dem/yade/new_build/trunk/core/ThreadRunner.cpp:23
#22 0x00007fe7cc3a14de in boost::function0<void, std::allocator<boost::function_base> >::operator() () from /usr/lib/libboost_thread-gcc42-mt-1_34_1.so.1.34.1
#23 0x00007fe7cc3a1162 in ?? () from /usr/lib/libboost_thread-gcc42-mt-1_34_1.so.1.34.1
#24 0x00007fe7cc7bd3ba in start_thread () from /lib/libpthread.so.0
#25 0x00007fe7c800bfcd in clone () from /lib/libc.so.6
#26 0x0000000000000000 in ?? ()
Thread 1 (Thread 0x7fe7ccf567f0 (LWP 11376)):
#0 0x00007fe7c8004742 in select () from /lib/libc.so.6
#1 0x00007fe7ca686add in QEventLoop::processEvents () from /usr/lib/libqt-mt.so.3
#2 0x00007fe7ca6ecec1 in QEventLoop::enterLoop () from /usr/lib/libqt-mt.so.3
#3 0x00007fe7ca6ecd82 in QEventLoop::exec () from /usr/lib/libqt-mt.so.3
#4 0x00007fe79685c1ac in QtGUI::run (this=0x1f757d0, argc=2, argv=0x7fffd509d4e8) at gui/qt3/QtGUI.cpp:79
#5 0x00000000004762a3 in main (argc=2, argv=0x7fffd509d4e8) at /home/gladk/dem/yade/new_build/trunk/core/yade.cpp:304
#0 0x00007fe7c8004742 in select () from /lib/libc.so.6
Aborted
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